Metagenome / Metatranscriptome Family F100886

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F100886
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	53 residues
Representative Sequence	PWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (77.451 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.451 % of family members)
Environment Ontology (ENVO)	Unclassified (26.471 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.216 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.50% β-sheet: 0.00% Coil/Unstructured: 57.50%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12900	Pyridox_ox_2	74.51
PF00871	Acetate_kinase	6.86
PF02518	HATPase_c	4.90
PF13500	AAA_26	1.96
PF02579	Nitro_FeMo-Co	1.96
PF01512	Complex1_51K	0.98
PF04107	GCS2	0.98
PF08281	Sigma70_r4_2	0.98
PF12724	Flavodoxin_5	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0282	Acetate kinase	Energy production and conversion [C]	6.86
COG3426	Butyrate kinase	Energy production and conversion [C]	6.86
COG1894	NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F)	Energy production and conversion [C]	0.98
COG4656	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit	Energy production and conversion [C]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.45 %
Unclassified	root	N/A	22.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.45 %
Unclassified	root	N/A	22.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.45 %
Unclassified	root	N/A	22.55 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.25 %
Unclassified	root	N/A	22.55 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.27 %
Unclassified	root	N/A	22.55 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.55 %
Unclassified	root	N/A	22.55 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	12.75 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.55 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	14.71 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	12.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.92 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.55 %
unclassified Nitriliruptorales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales	12.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.92 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2.94 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.55 %
Nitriliruptorales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	12.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.98 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10090746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	759	Open in IMG/M
3300004468\|Ga0068977_1028132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	843	Open in IMG/M
3300004476\|Ga0068966_1492926	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300004503\|Ga0068981_1133727	Not Available	636	Open in IMG/M
3300004618\|Ga0068963_1424217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1075	Open in IMG/M
3300005330\|Ga0070690_101245104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	595	Open in IMG/M
3300005334\|Ga0068869_101204717	Not Available	665	Open in IMG/M
3300005334\|Ga0068869_101329846	Not Available	634	Open in IMG/M
3300005434\|Ga0070709_10210000	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300005435\|Ga0070714_100361210	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300005436\|Ga0070713_101464197	Not Available	662	Open in IMG/M
3300005436\|Ga0070713_101845847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	586	Open in IMG/M
3300005437\|Ga0070710_10805069	Not Available	671	Open in IMG/M
3300005437\|Ga0070710_10875874	Not Available	646	Open in IMG/M
3300005445\|Ga0070708_100552021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1087	Open in IMG/M
3300005530\|Ga0070679_101553829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	609	Open in IMG/M
3300005537\|Ga0070730_10723094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	630	Open in IMG/M
3300005560\|Ga0066670_11028730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	504	Open in IMG/M
3300005618\|Ga0068864_101652487	Not Available	645	Open in IMG/M
3300005952\|Ga0080026_10088093	Not Available	853	Open in IMG/M
3300006755\|Ga0079222_12643123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300006806\|Ga0079220_10914593	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300006954\|Ga0079219_10800037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	740	Open in IMG/M
3300009098\|Ga0105245_12322114	Not Available	590	Open in IMG/M
3300009520\|Ga0116214_1234933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	694	Open in IMG/M
3300009700\|Ga0116217_11027053	Not Available	504	Open in IMG/M
3300009824\|Ga0116219_10811857	Not Available	510	Open in IMG/M
3300010323\|Ga0134086_10374777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	567	Open in IMG/M
3300010362\|Ga0126377_11699937	Not Available	706	Open in IMG/M
3300010373\|Ga0134128_11633830	Not Available	709	Open in IMG/M
3300010376\|Ga0126381_100528670	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300010379\|Ga0136449_101178342	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300010396\|Ga0134126_10275580	All Organisms → cellular organisms → Bacteria	1983	Open in IMG/M
3300010396\|Ga0134126_11118981	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300011078\|Ga0138565_1026747	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300011089\|Ga0138573_1287222	Not Available	834	Open in IMG/M
3300012285\|Ga0137370_10278025	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300012494\|Ga0157341_1037635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	549	Open in IMG/M
3300013297\|Ga0157378_12040382	Not Available	624	Open in IMG/M
3300013307\|Ga0157372_10345263	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300017970\|Ga0187783_10736131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	712	Open in IMG/M
3300017972\|Ga0187781_10408172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	970	Open in IMG/M
3300018058\|Ga0187766_10268454	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300018060\|Ga0187765_10428922	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300018062\|Ga0187784_10093209	All Organisms → cellular organisms → Bacteria	2448	Open in IMG/M
3300020582\|Ga0210395_10456104	All Organisms → cellular organisms → Bacteria → Terrabacteria group	962	Open in IMG/M
3300021420\|Ga0210394_10117070	All Organisms → cellular organisms → Bacteria	2308	Open in IMG/M
3300021476\|Ga0187846_10319460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	641	Open in IMG/M
3300021478\|Ga0210402_10379967	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300024279\|Ga0247692_1069552	Not Available	551	Open in IMG/M
3300025906\|Ga0207699_10088283	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300025914\|Ga0207671_11062506	Not Available	637	Open in IMG/M
3300025915\|Ga0207693_10794203	Not Available	730	Open in IMG/M
3300025929\|Ga0207664_10372249	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300025981\|Ga0207640_11438794	Not Available	618	Open in IMG/M
3300026095\|Ga0207676_10295226	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300026294\|Ga0209839_10047817	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300026317\|Ga0209154_1207981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300027696\|Ga0208696_1266561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	529	Open in IMG/M
3300027812\|Ga0209656_10030472	All Organisms → cellular organisms → Bacteria	3203	Open in IMG/M
3300031549\|Ga0318571_10007386	All Organisms → cellular organisms → Bacteria	2446	Open in IMG/M
3300031564\|Ga0318573_10081002	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300031564\|Ga0318573_10788609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	510	Open in IMG/M
3300031572\|Ga0318515_10102757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1500	Open in IMG/M
3300031572\|Ga0318515_10206985	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300031573\|Ga0310915_10395500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	981	Open in IMG/M
3300031682\|Ga0318560_10767540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	521	Open in IMG/M
3300031736\|Ga0318501_10669059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	572	Open in IMG/M
3300031747\|Ga0318502_10257061	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300031748\|Ga0318492_10481526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	657	Open in IMG/M
3300031751\|Ga0318494_10594933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	646	Open in IMG/M
3300031769\|Ga0318526_10201581	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300031778\|Ga0318498_10031766	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M
3300031778\|Ga0318498_10234138	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300031781\|Ga0318547_10045168	All Organisms → cellular organisms → Bacteria	2347	Open in IMG/M
3300031799\|Ga0318565_10105123	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300031805\|Ga0318497_10473827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	701	Open in IMG/M
3300031821\|Ga0318567_10071455	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300031823\|Ga0307478_11800491	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	503	Open in IMG/M
3300031894\|Ga0318522_10345165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	564	Open in IMG/M
3300031954\|Ga0306926_10311116	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300031954\|Ga0306926_12014094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	649	Open in IMG/M
3300032054\|Ga0318570_10190935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	924	Open in IMG/M
3300032059\|Ga0318533_10481030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	910	Open in IMG/M
3300032064\|Ga0318510_10129987	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300032068\|Ga0318553_10351378	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300032074\|Ga0308173_11279764	Not Available	687	Open in IMG/M
3300032160\|Ga0311301_10771549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1329	Open in IMG/M
3300032205\|Ga0307472_100448954	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300032261\|Ga0306920_102014318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	808	Open in IMG/M
3300032770\|Ga0335085_11857444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	615	Open in IMG/M
3300032783\|Ga0335079_11229366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	752	Open in IMG/M
3300032828\|Ga0335080_10120962	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
3300032828\|Ga0335080_10964262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	871	Open in IMG/M
3300032828\|Ga0335080_11338278	Not Available	714	Open in IMG/M
3300032829\|Ga0335070_10910837	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300032895\|Ga0335074_10046614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5991	Open in IMG/M
3300032897\|Ga0335071_11061953	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300033158\|Ga0335077_10567992	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300033158\|Ga0335077_11707559	Not Available	595	Open in IMG/M
3300033158\|Ga0335077_12197465	Not Available	507	Open in IMG/M
3300033289\|Ga0310914_10295766	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.20%
Host-Associated	Host-Associated	9.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.24%
Plants	Host-Associated → Plants	9.80%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Cave	Environmental → Terrestrial → Cave	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.65%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.45%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004503	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 79 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004618	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011078	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100907463	3300003218	Bog Forest Soil	TQLSDDAYPHLVLRIGMVIQMAVSVRRDPGDVLFTPGGDHADLRRG*
Ga0068977_10281321	3300004468	Peatlands Soil	IRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0068966_14929261	3300004476	Peatlands Soil	PWLREFIRTQLSDGAYPHLVLRIGVVTQMAISVRRDPGDVLFAPSRDHADLGRG*
Ga0068981_11337272	3300004503	Peatlands Soil	TQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0068963_14242171	3300004618	Peatlands Soil	REFIRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0070690_1012451041	3300005330	Switchgrass Rhizosphere	WLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0068869_1012047171	3300005334	Miscanthus Rhizosphere	TQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0068869_1013298461	3300005334	Miscanthus Rhizosphere	RTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0070709_102100003	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0070714_1003612103	3300005435	Agricultural Soil	EVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0070713_1014641971	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ELPWLREFIRTQLSDGAHPHLVLRVGMVTQVSVSVRRDPEDVLFPAGP*
Ga0070713_1018458471	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ELPWLREFIRTQLSDGAHPHLVLRVGMVTQVSVSVRRDPGDVLFPAGP*
Ga0070710_108050691	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LRTQLGDGACPHLVLRIGLVTQVALSVRREPGDVLFPAGDDRADRGTG*
Ga0070710_108758741	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	EVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0070708_1005520213	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	CGAAVALHSQPLELPWLREFLRTQLGDGACLHLVLRIGLVAQVAVSVRRDPGDVMFPAGH
Ga0070679_1015538292	3300005530	Corn Rhizosphere	GAAVALHSQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0070730_107230941	3300005537	Surface Soil	REFVRTELSDGGYPHLVLRIGLVTQVAVSVRRDPAEILFPA*
Ga0066670_110287301	3300005560	Soil	LPWLREFIRTQLSDSAHPHLVLRVGMVTQVAVSVRRDPEDVLFPAGP*
Ga0068864_1016524871	3300005618	Switchgrass Rhizosphere	QPLELPWLREFIRTQLSDSAHPHLVLRVGMVTQVAVSVRRDPGDVLFPAGP*
Ga0080026_100880933	3300005952	Permafrost Soil	VRGRVTNGQPLELPWLRDFIRTQLSDRACPQLMRRLGTVIQVAVSVRRGPADVLY*
Ga0079222_126431231	3300006755	Agricultural Soil	ELPWLRDFLRTQLGDGACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADRGAG*
Ga0079220_109145931	3300006806	Agricultural Soil	LREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRAGPG*
Ga0079219_108000373	3300006954	Agricultural Soil	CGAAVALHSQPLELPWLREFLRTQLSDGACPHLVLRIGMVTQVAVSVRRDPDEVLFPAGGGRAAPG*
Ga0105245_123221141	3300009098	Miscanthus Rhizosphere	QLSDASCPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDHADPAPG*
Ga0116214_12349333	3300009520	Peatlands Soil	ELAWLREFIRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0116217_110270531	3300009700	Peatlands Soil	IRTHLSDGAYPHLVLRIGMVTQAADSVRRDPDDVLLSPDGGHAGPGRR*
Ga0116219_108118572	3300009824	Peatlands Soil	IRTKLSDGAYPHLVLRIGMVTQVAVSVRRDPRDVLLTPSGDHAGLSCG*
Ga0134086_103747772	3300010323	Grasslands Soil	RLTELELPWLREFLRTQLSDDACPHLVLRIGMVTQVAVSVRRDPGEVLFPVGGDRAAPG*
Ga0126377_116999371	3300010362	Tropical Forest Soil	FIRAQLGDGACPHLVLRIGLVTQVAVSVRRDPEDVLFPAGP*
Ga0134128_116338301	3300010373	Terrestrial Soil	SQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG
Ga0126381_1005286703	3300010376	Tropical Forest Soil	ELPWLREFIRTELSDGACPHLVLRIGLVTQVAASVRREPGDVLFATGGDSASPG*
Ga0136449_1011783423	3300010379	Peatlands Soil	PWLRDYIRTHLSDGAYPHLVLRIGMVTQAADSVRRDPDDVLLSPDDGHAGPGS*
Ga0134126_102755803	3300010396	Terrestrial Soil	REVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0134126_111189813	3300010396	Terrestrial Soil	REVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRAGPAPS*
Ga0138565_10267473	3300011078	Peatlands Soil	TKLSGGAYPHLVLRIGMVTQAAVSVRRHPDDVLFSSGGDHVSPARA*
Ga0138573_12872223	3300011089	Peatlands Soil	REFIRTQLSDGAYPHLVLRIGVVTQMAISVRRDPGDVLFAPSRDHADLGRG*
Ga0137370_102780251	3300012285	Vadose Zone Soil	ALDSQPLELPWLREVLRTQLSDASCPHLVLRIGLVTQVAVSVRRDPGEVLFPAGDDRACHDTG*
Ga0157341_10376352	3300012494	Arabidopsis Rhizosphere	LRTQLSDGAYPHLVLRIGLVTQVALSVRRDLGDVLFPAGDDRADRGPG*
Ga0157378_120403821	3300013297	Miscanthus Rhizosphere	PWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0157372_103452633	3300013307	Corn Rhizosphere	AVALHSQPLELPWLGEFHRKQLSDGACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0187783_107361313	3300017970	Tropical Peatland	QPTELPLLREFIRTKLSGGAYPHLVLRIGMVTQASVSVRRHPDDVLFSSGGGHAGLART
Ga0187781_104081723	3300017972	Tropical Peatland	ALHSQPTELPLLRDFIRTKLSSGAYPHLVLRIGMVTQASVSVRRDPDEVLFSSGGGHVGLARA
Ga0187766_102684541	3300018058	Tropical Peatland	REFIRTQLSDQAYPHLVLRIGMVTQVAVGVRRDPGDVLYASGGDHVSLGAG
Ga0187765_104289223	3300018060	Tropical Peatland	QPLELPWLREFIRTQLSDDACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0187784_100932094	3300018062	Tropical Peatland	ELPLLRDFIRTKLSSGAYPHLVLRIGMVTQASVSVRRDPDEVLFSSGGGHVGLART
Ga0210395_104561041	3300020582	Soil	WLREFIRIQLSDGAYPHLVLRFGLVTQVAVSARRDPGDVLFPTDGDAAVPSVPGR
Ga0210394_101170701	3300021420	Soil	LSAQLGDSACPHLVLRIGLVTQVALSVRRDPGDVLFPTGDDRAGRALG
Ga0187846_103194601	3300021476	Biofilm	REFIRTKLSDGAYPHVVLRIGMVTQAAVSVRRGLDEVLLSFGDDHARIALR
Ga0210402_103799673	3300021478	Soil	LKTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0247692_10695522	3300024279	Soil	SQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0207699_100882833	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AVALHSQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG
Ga0207671_110625062	3300025914	Corn Rhizosphere	LREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRAGPAPS
Ga0207693_107942031	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GLPWLREFIRTELSDGAFPHLVLRIGLVPQVAVSVRRDPADVLFPAGP
Ga0207664_103722491	3300025929	Agricultural Soil	MRDFLRTQLGDGACPHLVLRIGLVTQVALSVRREPGDVLFPAGDDRADRGTG
Ga0207640_114387942	3300025981	Corn Rhizosphere	REVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0207676_102952261	3300026095	Switchgrass Rhizosphere	ELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0209839_100478173	3300026294	Soil	VTNGQPLELPWLRDFIRTQLSDRACPQLMRRLGTVIQVAVSVRRGPADVLY
Ga0209154_12079813	3300026317	Soil	AVALHSQPLELPWLREFLRTQLGDGACPHLVLRIGLVTQVALSVRREPGDVLFPAGDDRAGRGPS
Ga0208696_12665612	3300027696	Peatlands Soil	DYIRTHLSDGAYPHLVLRIGMVTQAADSVRRDPDDVLLSPDDGHAGPGS
Ga0209656_100304721	3300027812	Bog Forest Soil	REFIRTQLSDGAYPHLVLRIGMVTQAAVSVRRDPRDVLFAPGGDHAVLGRG
Ga0318571_100073861	3300031549	Soil	IRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADVLFSPDGDGGV
Ga0318573_100810021	3300031564	Soil	IRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV
Ga0318573_107886092	3300031564	Soil	FIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRVGPG
Ga0318515_101027573	3300031572	Soil	FIRSQLSDGACPHLVLRIGLVTQMAVSVRRDLGDVLFPVGGDRAGPG
Ga0318515_102069851	3300031572	Soil	ELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRAGPG
Ga0310915_103955001	3300031573	Soil	LLTASTCGAAVALHSQPLELPWLREFIGTQLSDGACPHLVLRIGLVTQAAVSVRRDPGDLLFPIGGDRAGPG
Ga0318560_107675401	3300031682	Soil	PLELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRVGPG
Ga0318501_106690592	3300031736	Soil	TQLSDGAYPQLVLRIGMVAQVSVSVRRDLDDVLFASGGDRVGAVPS
Ga0318502_102570611	3300031747	Soil	ELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDSASPG
Ga0318492_104815261	3300031748	Soil	RTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDSASPG
Ga0318494_105949333	3300031751	Soil	QPLELPWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRVGPG
Ga0318526_102015812	3300031769	Soil	RTDLSDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV
Ga0318498_100317664	3300031778	Soil	EFIRSQLSDGACPHLVLRIGLVTQMAVSVRRDLGDVLFPVGGDRAGPG
Ga0318498_102341381	3300031778	Soil	PWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0318547_100451684	3300031781	Soil	LELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVMFPIGGDRASPG
Ga0318565_101051231	3300031799	Soil	SDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV
Ga0318497_104738271	3300031805	Soil	PWLREFIRTQLSDGAYPHLVLRIGLVTQVAVSVRREPDEVLFSAGAVSRPVT
Ga0318567_100714553	3300031821	Soil	LRELIRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADVLFSPDGDGGV
Ga0307478_118004911	3300031823	Hardwood Forest Soil	LREFIRAQLSDGAYPHLVLRIGMITQVAVSVRRDPGDVLFPTGGDDVSADRG
Ga0318522_103451652	3300031894	Soil	LREFIRTQLSDQAYPHLVLRIGMVTQVAVGVRRDSGDVLFASGGDHVSLAAG
Ga0306926_103111163	3300031954	Soil	LPWLRELIRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADVLFSPDGDGGV
Ga0306926_120140941	3300031954	Soil	PWLREFIRTQLSDQAYPHLVLRIGMVTQVAVGVRRDPGDVLFASGGDHVSLAAG
Ga0318570_101909353	3300032054	Soil	ELPWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0318533_104810301	3300032059	Soil	GAAVALHSQPMELPWLRELIRTDLSDAAYPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRASPG
Ga0318510_101299873	3300032064	Soil	LREFIRTQLSDDACPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRASPG
Ga0318553_103513781	3300032068	Soil	LPWLREFIRIRLSDQAYPHLVLRIGMVTQVAVSMRRDPGDVLFASGADHVGLGVG
Ga0308173_112797641	3300032074	Soil	LLTASVCGAAVALHSQPVELPWLREFLGTQLGDGACPHLVLRIGLVAQVAVSARRDPGEVLFQAGDDRAGRDPS
Ga0311301_107715493	3300032160	Peatlands Soil	FIRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG
Ga0307472_1004489543	3300032205	Hardwood Forest Soil	LSDASCPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDHADPAPG
Ga0306920_1020143181	3300032261	Soil	REFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDLGDVLFPVGGDRAGPG
Ga0335085_118574442	3300032770	Soil	RILLTASICGAAVALDSQPLELPWLREVLRTQLSDAACPHLALRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0335079_112293662	3300032783	Soil	PMLREFIRTQLSDGAYPHLVLRIGLVIQAAVSVRRDPGDVLFASGGDRAGAGAS
Ga0335080_101209623	3300032828	Soil	PLELPWLREFIRTQLSDDGYPHLVLRFGMVAQAAVSVRRDPGDVLFASGGDRAGAGAS
Ga0335080_109642623	3300032828	Soil	PWLREFLRTQLSDGACPHLVLRIGMVTQVAVSVRRDPDEVLFPAGGDRAAPG
Ga0335080_113382783	3300032828	Soil	LDSQPLELPWLREVLRTQLSDAACPHLVLRIGMVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0335070_109108373	3300032829	Soil	EFIRTQLSDDAYPHLVLRIGMVTQAAVSVRRDPADVLFAPGGDRAALR
Ga0335074_100466145	3300032895	Soil	WLREFIRTQLSGGAYPHVVLRIGMAVQAADSVRRGVDDVLFPSDAAAPSSN
Ga0335071_110619531	3300032897	Soil	IRTQLGDDACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0335077_105679923	3300033158	Soil	QPLELPWLREFIRTQLSDDACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGAG
Ga0335077_117075592	3300033158	Soil	TASVCGAAVALDSQPLELPWLREVLRTQLSDASCPHLVLRIGMVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0335077_121974652	3300033158	Soil	IRTHLSDDAYPHLVLRIGMVTQAAVSVRRDPADVLLAPGGGHAGLG
Ga0310914_102957661	3300033289	Soil	MELPWLRELIRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100886

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences