NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100864

Metagenome / Metatranscriptome Family F100864

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100864
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 37 residues
Representative Sequence MPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Number of Associated Samples 60
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 78.43 %
% of genes near scaffold ends (potentially truncated) 38.24 %
% of genes from short scaffolds (< 2000 bps) 85.29 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.686 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(41.176 % of family members)
Environment Ontology (ENVO) Unclassified
(40.196 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.941 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.51%    β-sheet: 0.00%    Coil/Unstructured: 63.49%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF00072Response_reg 1.96
PF01555N6_N4_Mtase 1.96
PF07635PSCyt1 1.96
PF02371Transposase_20 1.96
PF09335SNARE_assoc 1.96
PF00701DHDPS 1.96
PF01066CDP-OH_P_transf 1.96
PF00291PALP 1.96
PF06182ABC2_membrane_6 1.96
PF01370Epimerase 1.96
PF13720Acetyltransf_11 0.98
PF10110GPDPase_memb 0.98
PF16198TruB_C_2 0.98
PF00196GerE 0.98
PF16177ACAS_N 0.98
PF06325PrmA 0.98
PF00293NUDIX 0.98
PF01168Ala_racemase_N 0.98
PF00034Cytochrom_C 0.98
PF03129HGTP_anticodon 0.98
PF13472Lipase_GDSL_2 0.98
PF00892EamA 0.98
PF00535Glycos_transf_2 0.98
PF04461DUF520 0.98
PF01609DDE_Tnp_1 0.98
PF05698Trigger_C 0.98
PF13360PQQ_2 0.98
PF01842ACT 0.98
PF02350Epimerase_2 0.98
PF01634HisG 0.98
PF01702TGT 0.98
PF13517FG-GAP_3 0.98
PF00742Homoserine_dh 0.98
PF00593TonB_dep_Rec 0.98
PF09723Zn-ribbon_8 0.98
PF01799Fer2_2 0.98
PF13508Acetyltransf_7 0.98
PF05198IF3_N 0.98
PF07638Sigma70_ECF 0.98
PF01509TruB_N 0.98
PF12704MacB_PCD 0.98
PF13411MerR_1 0.98
PF00171Aldedh 0.98
PF14236DUF4338 0.98
PF13378MR_MLE_C 0.98
PF01797Y1_Tnp 0.98
PF13365Trypsin_2 0.98
PF05685Uma2 0.98
PF07394DUF1501 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG03294-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyaseCell wall/membrane/envelope biogenesis [M] 3.92
COG0398Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 familyFunction unknown [S] 1.96
COG0558Phosphatidylglycerophosphate synthaseLipid transport and metabolism [I] 1.96
COG0586Membrane integrity protein DedA, putative transporter, DedA/Tvp38 familyCell wall/membrane/envelope biogenesis [M] 1.96
COG0863DNA modification methylaseReplication, recombination and repair [L] 1.96
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 1.96
COG1183Phosphatidylserine synthaseLipid transport and metabolism [I] 1.96
COG1238Uncharacterized membrane protein YqaA, VTT domainFunction unknown [S] 1.96
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 1.96
COG3547TransposaseMobilome: prophages, transposons [X] 1.96
COG3694ABC-type uncharacterized transport system, permease componentGeneral function prediction only [R] 1.96
COG5050sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferasesLipid transport and metabolism [I] 1.96
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 0.98
COG0040ATP phosphoribosyltransferaseAmino acid transport and metabolism [E] 0.98
COG0124Histidyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.98
COG0130tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNATranslation, ribosomal structure and biogenesis [J] 0.98
COG0290Translation initiation factor IF-3Translation, ribosomal structure and biogenesis [J] 0.98
COG0343Queuine/archaeosine tRNA-ribosyltransferaseTranslation, ribosomal structure and biogenesis [J] 0.98
COG0381UDP-N-acetylglucosamine 2-epimeraseCell wall/membrane/envelope biogenesis [M] 0.98
COG0423Glycyl-tRNA synthetase, class IITranslation, ribosomal structure and biogenesis [J] 0.98
COG0441Threonyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.98
COG0442Prolyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.98
COG0460Homoserine dehydrogenaseAmino acid transport and metabolism [E] 0.98
COG0544FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)Posttranslational modification, protein turnover, chaperones [O] 0.98
COG0707UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferaseCell wall/membrane/envelope biogenesis [M] 0.98
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 0.98
COG1549Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domainsTranslation, ribosomal structure and biogenesis [J] 0.98
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.98
COG1666Cyclic di-GMP-binding protein YajQ, UPF0234 familySignal transduction mechanisms [T] 0.98
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 0.98
COG2264Ribosomal protein L11 methylase PrmATranslation, ribosomal structure and biogenesis [J] 0.98
COG2890Methylase of polypeptide chain release factorsTranslation, ribosomal structure and biogenesis [J] 0.98
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.98
COG3293TransposaseMobilome: prophages, transposons [X] 0.98
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.98
COG3897Protein N-terminal and lysine N-methylase, NNT1/EFM7 familyPosttranslational modification, protein turnover, chaperones [O] 0.98
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 0.98
COG4636Endonuclease, Uma2 family (restriction endonuclease fold)General function prediction only [R] 0.98
COG5421TransposaseMobilome: prophages, transposons [X] 0.98
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.98
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms65.69 %
UnclassifiedrootN/A34.31 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005444|Ga0070694_101688027Not Available539Open in IMG/M
3300005451|Ga0066681_10680893Not Available627Open in IMG/M
3300005466|Ga0070685_11030470All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium619Open in IMG/M
3300005540|Ga0066697_10640979All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia586Open in IMG/M
3300005553|Ga0066695_10243785All Organisms → cellular organisms → Bacteria1134Open in IMG/M
3300005553|Ga0066695_10288001Not Available1037Open in IMG/M
3300005556|Ga0066707_10925520Not Available534Open in IMG/M
3300005557|Ga0066704_10769402All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium601Open in IMG/M
3300005558|Ga0066698_10748764All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium639Open in IMG/M
3300005598|Ga0066706_10437648Not Available1042Open in IMG/M
3300006034|Ga0066656_10338383Not Available972Open in IMG/M
3300006791|Ga0066653_10255710Not Available892Open in IMG/M
3300006791|Ga0066653_10764667Not Available506Open in IMG/M
3300006796|Ga0066665_11478837Not Available529Open in IMG/M
3300006797|Ga0066659_10175117All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1548Open in IMG/M
3300006797|Ga0066659_10535066Not Available944Open in IMG/M
3300007265|Ga0099794_10281250All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300007788|Ga0099795_10495038All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300009012|Ga0066710_101731015All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium949Open in IMG/M
3300009094|Ga0111539_10094964All Organisms → cellular organisms → Bacteria3503Open in IMG/M
3300009094|Ga0111539_10218544All Organisms → cellular organisms → Bacteria2220Open in IMG/M
3300009094|Ga0111539_10894033All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1033Open in IMG/M
3300009100|Ga0075418_12237061All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium596Open in IMG/M
3300009137|Ga0066709_100162141All Organisms → cellular organisms → Bacteria → Proteobacteria2879Open in IMG/M
3300009137|Ga0066709_100837726All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1336Open in IMG/M
3300009156|Ga0111538_10322037All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1957Open in IMG/M
3300010322|Ga0134084_10258011Not Available632Open in IMG/M
3300010322|Ga0134084_10400133Not Available535Open in IMG/M
3300010323|Ga0134086_10297703Not Available626Open in IMG/M
3300010329|Ga0134111_10467513All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300010329|Ga0134111_10517965All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia525Open in IMG/M
3300010364|Ga0134066_10034068Not Available1221Open in IMG/M
3300010364|Ga0134066_10160629All Organisms → cellular organisms → Bacteria714Open in IMG/M
3300010399|Ga0134127_11051666All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium876Open in IMG/M
3300011423|Ga0137436_1104684All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales748Open in IMG/M
3300012189|Ga0137388_10143669All Organisms → cellular organisms → Bacteria2104Open in IMG/M
3300012199|Ga0137383_10186200All Organisms → cellular organisms → Bacteria1522Open in IMG/M
3300012199|Ga0137383_10371017All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1048Open in IMG/M
3300012199|Ga0137383_10634107All Organisms → cellular organisms → Bacteria → PVC group781Open in IMG/M
3300012199|Ga0137383_10684588Not Available749Open in IMG/M
3300012201|Ga0137365_10096862All Organisms → cellular organisms → Bacteria2220Open in IMG/M
3300012201|Ga0137365_10135555All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1851Open in IMG/M
3300012201|Ga0137365_10172406All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1621Open in IMG/M
3300012201|Ga0137365_10488305All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium905Open in IMG/M
3300012201|Ga0137365_10618598All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium793Open in IMG/M
3300012204|Ga0137374_10914340All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300012204|Ga0137374_11274945Not Available509Open in IMG/M
3300012206|Ga0137380_10227838All Organisms → cellular organisms → Bacteria1684Open in IMG/M
3300012206|Ga0137380_11033890Not Available701Open in IMG/M
3300012207|Ga0137381_10631742All Organisms → cellular organisms → Bacteria → PVC group932Open in IMG/M
3300012208|Ga0137376_10237174Not Available1581Open in IMG/M
3300012208|Ga0137376_10441109All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1130Open in IMG/M
3300012209|Ga0137379_10021812All Organisms → cellular organisms → Bacteria6154Open in IMG/M
3300012209|Ga0137379_10035083All Organisms → cellular organisms → Bacteria4836Open in IMG/M
3300012209|Ga0137379_10063186All Organisms → cellular organisms → Bacteria3564Open in IMG/M
3300012209|Ga0137379_10064000All Organisms → cellular organisms → Bacteria3540Open in IMG/M
3300012209|Ga0137379_10090297All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2947Open in IMG/M
3300012209|Ga0137379_10228229All Organisms → cellular organisms → Bacteria1776Open in IMG/M
3300012209|Ga0137379_10253918All Organisms → cellular organisms → Bacteria1670Open in IMG/M
3300012209|Ga0137379_11226887All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium657Open in IMG/M
3300012209|Ga0137379_11686377Not Available531Open in IMG/M
3300012210|Ga0137378_11217821Not Available669Open in IMG/M
3300012350|Ga0137372_10466348Not Available945Open in IMG/M
3300012351|Ga0137386_10090213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria2156Open in IMG/M
3300012351|Ga0137386_11113434Not Available557Open in IMG/M
3300012353|Ga0137367_11103027Not Available536Open in IMG/M
3300012354|Ga0137366_10089469All Organisms → cellular organisms → Bacteria2338Open in IMG/M
3300012354|Ga0137366_10753364All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium692Open in IMG/M
3300012357|Ga0137384_10570500All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera925Open in IMG/M
3300012357|Ga0137384_11181678All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium609Open in IMG/M
3300012358|Ga0137368_10123744All Organisms → cellular organisms → Bacteria1955Open in IMG/M
3300012358|Ga0137368_10353635Not Available976Open in IMG/M
3300012358|Ga0137368_10495448All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium788Open in IMG/M
3300012358|Ga0137368_10862584All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium555Open in IMG/M
3300012532|Ga0137373_10088708All Organisms → cellular organisms → Bacteria2734Open in IMG/M
3300014154|Ga0134075_10365459All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia634Open in IMG/M
3300014157|Ga0134078_10552987Not Available544Open in IMG/M
3300014157|Ga0134078_10565361Not Available539Open in IMG/M
3300017656|Ga0134112_10386161Not Available576Open in IMG/M
3300018061|Ga0184619_10219200All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300018071|Ga0184618_10191733All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium851Open in IMG/M
3300018071|Ga0184618_10208062All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium819Open in IMG/M
3300018078|Ga0184612_10455731Not Available635Open in IMG/M
3300018431|Ga0066655_11112829All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia553Open in IMG/M
3300018469|Ga0190270_11993253All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium639Open in IMG/M
3300018482|Ga0066669_11611747Not Available593Open in IMG/M
3300018482|Ga0066669_12128355Not Available530Open in IMG/M
3300021080|Ga0210382_10011309All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium3039Open in IMG/M
3300021080|Ga0210382_10050095All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1641Open in IMG/M
3300021080|Ga0210382_10464150Not Available561Open in IMG/M
3300022756|Ga0222622_11134826All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium575Open in IMG/M
3300025936|Ga0207670_10023768All Organisms → cellular organisms → Bacteria3820Open in IMG/M
3300025936|Ga0207670_10130166All Organisms → cellular organisms → Bacteria1842Open in IMG/M
3300025936|Ga0207670_10254262All Organisms → cellular organisms → Bacteria → PVC group1359Open in IMG/M
3300025936|Ga0207670_11662068All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium543Open in IMG/M
3300026298|Ga0209236_1208016All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium719Open in IMG/M
3300026324|Ga0209470_1298503Not Available599Open in IMG/M
3300026530|Ga0209807_1112709Not Available1143Open in IMG/M
3300026530|Ga0209807_1210483Not Available674Open in IMG/M
3300026537|Ga0209157_1234250Not Available745Open in IMG/M
3300031424|Ga0308179_1005152All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1115Open in IMG/M
3300034681|Ga0370546_020602All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia872Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil41.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil17.65%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil10.78%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.86%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere4.90%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.90%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.92%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.94%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.98%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.98%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011423Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300031424Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034681Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070694_10168802723300005444Corn, Switchgrass And Miscanthus RhizosphereGNGRGAMPFLMSFALEPEIVTLAWTDNASVQFPLNIYATKG*
Ga0066681_1068089323300005451SoilMPFLMSFALEPEIVTVAWIDNASVQFPLNIYATKGLTVLSQWN*
Ga0070685_1103047023300005466Switchgrass RhizosphereMPFIMSFAREPAIVTLAWSDSVSVAFPLNIDATKGLTRFEK
Ga0066697_1064097913300005540SoilMPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Ga0066695_1024378523300005553SoilMSFVLEPEIVTLAWIDNASVQFPLNIYATKEHSKRGTATTSI*
Ga0066695_1028800113300005553SoilMPFLMSFALEHEIVRLAWIDNAAVQFPLNIYATKGF
Ga0066707_1092552023300005556SoilMPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA*
Ga0066704_1076940223300005557SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGL
Ga0066698_1074876423300005558SoilMPFLMSLALEPEIVTLVDNAFVQFPLNIYATKGSTHLYLL*
Ga0066706_1043764823300005598SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG*
Ga0066656_1033838323300006034SoilNGRGAMPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG*
Ga0066653_1025571013300006791SoilMSFALEPEIVTLAWIDNASVHFPLNICATKGFKNGSR*
Ga0066653_1076466723300006791SoilMPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG*
Ga0066665_1147883723300006796SoilMPFLMSFALEPEIVALAWIDNAFVQFPLNSYATKGLPQ
Ga0066659_1017511723300006797SoilMPFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG*
Ga0066659_1053506623300006797SoilRGAMPFLMSFALEPEIVTLAWIDNVPVQFPLNIYATKG*
Ga0099794_1028125023300007265Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGFN*
Ga0099795_1049503813300007788Vadose Zone SoilMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0066710_10173101523300009012Grasslands SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG
Ga0111539_1009496423300009094Populus RhizosphereMPFLMSFALEPEFMTLAWIDNASVQFPLNIYATKG*
Ga0111539_1021854433300009094Populus RhizosphereMPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV*
Ga0111539_1089403323300009094Populus RhizosphereMPFLMIVALELEIMTFAWIDNASVQFPLNIYPTKG*
Ga0075418_1223706123300009100Populus RhizosphereAMPFLMSFALEPEIVTLAWIHNASVQFPLNIYATKG*
Ga0066709_10016214113300009137Grasslands SoilMPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG*
Ga0066709_10083772633300009137Grasslands SoilMLFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG*
Ga0111538_1032203713300009156Populus RhizosphereMPFLMSFAPEPEIVTFAWIDNASVQFPLNIYATKG*
Ga0134084_1025801123300010322Grasslands SoilMPFLMSFALEPEMVTLAWIDNDSVQFPLNIYATKGVIQIASA*
Ga0134084_1040013313300010322Grasslands SoilMSFLMSFALEPEIVTLAWIDNAPVQFPLNIYATKG*
Ga0134086_1029770313300010323Grasslands SoilMSFLMSFAMEPEIVPLAWIDNASVQFPLNIYATKG
Ga0134111_1046751313300010329Grasslands SoilMPFLMSFALEPEIVTLAWIDNISVQFPLNIYPTKGRARS
Ga0134111_1051796513300010329Grasslands SoilMPFLMSFALEPEIVTLTWIDNASVQISLNIYATEE*
Ga0134066_1003406813300010364Grasslands SoilMPFLMSFALEPEILTLAWIDNASVQFPLNIYATKE*
Ga0134066_1016062913300010364Grasslands SoilMPFLMIVALELEIMTFAWIDNASVQFPLNIYATKG*
Ga0134127_1105166633300010399Terrestrial SoilMPSLTSLALEPEIMTLAWIDNASVQFPLNIYATLGF
Ga0137436_110468423300011423SoilMPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKG*
Ga0137388_1014366933300012189Vadose Zone SoilMPFLMSFALEPEIVTLAKIDNVSLQFPLNLYATKGCT*
Ga0137383_1018620013300012199Vadose Zone SoilGRGAMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137383_1037101723300012199Vadose Zone SoilMPFLMSFALEPEIVTVAWIDNASVQFPLNIYAAKGLTYG*
Ga0137383_1063410713300012199Vadose Zone SoilMPFLMSFALGHEIVMVAWIDNASVQFPLNIYATKG*
Ga0137383_1068458813300012199Vadose Zone SoilMPFLMSFALEPEIVALAWIDNGSVQFSLNISATKG*
Ga0137365_1009686223300012201Vadose Zone SoilMPFLMSFVLEPEIVTLAWIDNASVQFPLNIYSTSSGKA*
Ga0137365_1013555533300012201Vadose Zone SoilMPFLMSFVLEPEIVTLAWIDNASVQFLLNIYATKE*
Ga0137365_1017240623300012201Vadose Zone SoilMPFLVSFALEPEIVTMAWIENASVHFPLNIYATKG*
Ga0137365_1048830523300012201Vadose Zone SoilMSFALEPEIVTLAWIDNASVQFPLNIYATLGFTFQGFN*
Ga0137365_1061859813300012201Vadose Zone SoilMPFLMSLALEPEIMTLAWIDNASVQFPLNIYATKG*
Ga0137374_1091434013300012204Vadose Zone SoilNGRGEMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG*
Ga0137374_1127494523300012204Vadose Zone SoilMSFLMSFALEHEIVTLAWADNASVQFPLNIYATKRLIGAIFGI
Ga0137380_1022783823300012206Vadose Zone SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYPTKGFN*
Ga0137380_1103389023300012206Vadose Zone SoilPFLMSFAMEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137381_1063174223300012207Vadose Zone SoilMPFAMSFALEHEILTLTWIDNASVQISLNIYATEE*
Ga0137376_1023717423300012208Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG*
Ga0137376_1044110913300012208Vadose Zone SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYANEG*
Ga0137379_1002181223300012209Vadose Zone SoilMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKGLIPR*
Ga0137379_1003508343300012209Vadose Zone SoilMPFSMSFALEHEIVTLAWIDNASVQFPLNIYATKG*
Ga0137379_1006318613300012209Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNAFVQFPLNFYATKG
Ga0137379_1006400053300012209Vadose Zone SoilMPFLMSFALEHEIVTFALIDNASVQFPLNIYATKG*
Ga0137379_1009029733300012209Vadose Zone SoilMRFLMSFALEPEIVALAWIENASVQFPFNIYATKG*
Ga0137379_1022822923300012209Vadose Zone SoilMSLLMSFAPEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI*
Ga0137379_1025391813300012209Vadose Zone SoilGNGRGAMPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG*
Ga0137379_1122688713300012209Vadose Zone SoilRGAMPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKG*
Ga0137379_1168637713300012209Vadose Zone SoilGRGEMPFLKSFALEHEIVTFAWIDNAFVQFPLNFYATKG*
Ga0137378_1121782113300012210Vadose Zone SoilAMSSLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137372_1046634813300012350Vadose Zone SoilMPFLMSFALEPEIVTLAWIDNVSVQFPLNVYATKG*
Ga0137386_1009021323300012351Vadose Zone SoilMPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG*
Ga0137386_1111343413300012351Vadose Zone SoilMSFLMSFALEPEIVTLAWIDNGSVQFALNIYATKGFS
Ga0137367_1110302733300012353Vadose Zone SoilMPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKGLNIPRFVG*
Ga0137366_1008946923300012354Vadose Zone SoilMSFALEPEIVTLTLIDNASVQFPLNIYSTSSGKA*
Ga0137366_1075336413300012354Vadose Zone SoilGAMPFVMSFALEHEIVTLAWIDNASVEFPLNNYATKG*
Ga0137384_1057050023300012357Vadose Zone SoilLMSFALEHEIVTFAWIDNASVQFPLNIYATKVFRLPF*
Ga0137384_1118167823300012357Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNAPVQFTLNIYATKG*
Ga0137368_1012374443300012358Vadose Zone SoilEMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG*
Ga0137368_1035363523300012358Vadose Zone SoilMPFLMSFALEHEFVTFAWIDNDSVHFPLNFHTTKGF
Ga0137368_1049544813300012358Vadose Zone SoilMPFLMSFALEHEILTLAWIDNASVQFPLNVYATKG*
Ga0137368_1086258423300012358Vadose Zone SoilMSFLMSFALEPEIVTFAWIDNASVQFPLNIYATKRFILPH*
Ga0137373_1008870823300012532Vadose Zone SoilMPFLMSFALQHAIVTLAWIDNASVQFPLNIYATKGFPCVVSLLK*
Ga0134075_1036545913300014154Grasslands SoilMSFLMSFALEPEIVTLAWIENASVQFPLNIYATKG*
Ga0134078_1055298723300014157Grasslands SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIDATKGYSYF*
Ga0134078_1056536123300014157Grasslands SoilMPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG*
Ga0134112_1038616123300017656Grasslands SoilMPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA
Ga0184619_1021920023300018061Groundwater SedimentMPFLMSFALEHEVVTFAWIDDASVQFPLNIYATKG
Ga0184618_1019173313300018071Groundwater SedimentMPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKGLTRAD
Ga0184618_1020806213300018071Groundwater SedimentMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGLLLW
Ga0184612_1045573113300018078Groundwater SedimentMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG
Ga0066655_1111282923300018431Grasslands SoilMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Ga0190270_1199325333300018469SoilMPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG
Ga0066669_1161174713300018482Grasslands SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKA
Ga0066669_1212835523300018482Grasslands SoilMSFLVSFALEPEIVTLAWIDNDSVQFPLNFYATKG
Ga0210382_1001130943300021080Groundwater SedimentMPFLMSFALEHEIVTIAWLDNASVQFPLNIYATKE
Ga0210382_1005009513300021080Groundwater SedimentMPFVMSFALEHEIVTLTWIDNASVQFPLNIYATKGIT
Ga0210382_1046415013300021080Groundwater SedimentMPFLMSFALEHEIVTFAWIDNASVQFPLNICATKGL
Ga0222622_1113482613300022756Groundwater SedimentGNGRGAMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG
Ga0207670_1002376843300025936Switchgrass RhizosphereMPSLMSFALEHEIVTFAWIDNASVQLPLNIYATKG
Ga0207670_1013016633300025936Switchgrass RhizosphereMPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV
Ga0207670_1025426213300025936Switchgrass RhizosphereMPFLMSFALEHEIVTFAWIDNASVQFALTIYATKELFFEISR
Ga0207670_1166206813300025936Switchgrass RhizosphereMPFFMNFALEHEIVTLAWIDNASVQFPLNIYATKGFT
Ga0209236_120801623300026298Grasslands SoilMPFLMSFALEPEIVTIAWIDKASVQFPLTIYATKG
Ga0209470_129850323300026324SoilFAMEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI
Ga0209807_111270923300026530SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKAFTD
Ga0209807_121048323300026530SoilMPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG
Ga0209157_123425023300026537SoilMSLLMSFAPEPEIVTLAWIDNASVQFPLNIYATKGYSKRGTA
Ga0308179_100515213300031424SoilMSFLMRFALEHEIVTLAWIDNASVQFPLNIYATKGLIQK
Ga0370546_020602_157_2643300034681SoilMPFLMSFALEPEIMTLAWIDNASVQFPPNIYATGG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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