NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F100862

Metagenome Family F100862

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100862
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 52 residues
Representative Sequence MSYQFELDQSNRSLRFPVILMAGIVCTVIAAYAFAACGDRNPDQARA
Number of Associated Samples 89
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 99.02 %
% of genes from short scaffolds (< 2000 bps) 85.29 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(36.274 % of family members)
Environment Ontology (ENVO) Unclassified
(37.255 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.020 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 53.33%    β-sheet: 0.00%    Coil/Unstructured: 46.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF02954HTH_8 92.16
PF00496SBP_bac_5 2.94
PF02518HATPase_c 1.96
PF00158Sigma54_activat 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002561|JGI25384J37096_10194240All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300002907|JGI25613J43889_10109651All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300004463|Ga0063356_105339749All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300004479|Ga0062595_100518197All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300004480|Ga0062592_100893429All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300005171|Ga0066677_10430132All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300005171|Ga0066677_10650651All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300005179|Ga0066684_10799805All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300005180|Ga0066685_10325957All Organisms → cellular organisms → Bacteria1065Open in IMG/M
3300005406|Ga0070703_10003119All Organisms → cellular organisms → Bacteria4742Open in IMG/M
3300005440|Ga0070705_101378566All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300005450|Ga0066682_10923883All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300005467|Ga0070706_100682383All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300005558|Ga0066698_10560763All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300005559|Ga0066700_10415943All Organisms → cellular organisms → Bacteria → Proteobacteria947Open in IMG/M
3300005576|Ga0066708_10803314All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300006791|Ga0066653_10271527All Organisms → cellular organisms → Bacteria862Open in IMG/M
3300006797|Ga0066659_11346579All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300006847|Ga0075431_100067972All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes3678Open in IMG/M
3300006854|Ga0075425_100725777All Organisms → cellular organisms → Bacteria1140Open in IMG/M
3300006854|Ga0075425_101675068All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300006881|Ga0068865_100668287All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300006903|Ga0075426_10670845All Organisms → cellular organisms → Bacteria → Proteobacteria777Open in IMG/M
3300007004|Ga0079218_11490380All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300007004|Ga0079218_12243827All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300007255|Ga0099791_10238405All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300007788|Ga0099795_10478963All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300009090|Ga0099827_10377046All Organisms → cellular organisms → Bacteria1210Open in IMG/M
3300009090|Ga0099827_10693865All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300010323|Ga0134086_10066984All Organisms → cellular organisms → Bacteria1236Open in IMG/M
3300010323|Ga0134086_10122766All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300010333|Ga0134080_10004792All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes4645Open in IMG/M
3300010336|Ga0134071_10594901All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300011409|Ga0137323_1031906All Organisms → cellular organisms → Bacteria1164Open in IMG/M
3300012096|Ga0137389_10906821All Organisms → cellular organisms → Bacteria756Open in IMG/M
3300012198|Ga0137364_10038588All Organisms → cellular organisms → Bacteria3108Open in IMG/M
3300012199|Ga0137383_10862847All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300012200|Ga0137382_10062763All Organisms → cellular organisms → Bacteria2357Open in IMG/M
3300012200|Ga0137382_10734884All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300012201|Ga0137365_10010167All Organisms → cellular organisms → Bacteria → Proteobacteria7450Open in IMG/M
3300012202|Ga0137363_10407287All Organisms → cellular organisms → Bacteria1133Open in IMG/M
3300012203|Ga0137399_10208695All Organisms → cellular organisms → Bacteria1588Open in IMG/M
3300012205|Ga0137362_11005853All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300012206|Ga0137380_10475662All Organisms → cellular organisms → Bacteria1103Open in IMG/M
3300012207|Ga0137381_11366220All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300012208|Ga0137376_10008630All Organisms → cellular organisms → Bacteria7110Open in IMG/M
3300012209|Ga0137379_10084123All Organisms → cellular organisms → Bacteria3061Open in IMG/M
3300012211|Ga0137377_10753755All Organisms → cellular organisms → Bacteria907Open in IMG/M
3300012211|Ga0137377_11605411All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300012353|Ga0137367_10411453All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300012360|Ga0137375_11000875All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300012532|Ga0137373_10391613All Organisms → cellular organisms → Bacteria1081Open in IMG/M
3300012582|Ga0137358_10270690All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300012685|Ga0137397_10246705All Organisms → cellular organisms → Bacteria1330Open in IMG/M
3300012685|Ga0137397_11062492All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300012917|Ga0137395_10545256All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300012918|Ga0137396_10208376All Organisms → cellular organisms → Bacteria1438Open in IMG/M
3300012923|Ga0137359_10859940All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300012925|Ga0137419_11207819All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300012927|Ga0137416_10332218All Organisms → cellular organisms → Bacteria1269Open in IMG/M
3300012927|Ga0137416_10768613All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300012972|Ga0134077_10234288All Organisms → cellular organisms → Bacteria756Open in IMG/M
3300012976|Ga0134076_10373767All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300015052|Ga0137411_1341265All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria4062Open in IMG/M
3300015358|Ga0134089_10272911All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300015359|Ga0134085_10257274All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300015359|Ga0134085_10325032All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300015359|Ga0134085_10372285All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300017654|Ga0134069_1216161All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300017659|Ga0134083_10140344All Organisms → cellular organisms → Bacteria973Open in IMG/M
3300017997|Ga0184610_1272174All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300018056|Ga0184623_10093894All Organisms → cellular organisms → Bacteria1385Open in IMG/M
3300018084|Ga0184629_10016089All Organisms → cellular organisms → Bacteria → Proteobacteria3012Open in IMG/M
3300018433|Ga0066667_12201967All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300019877|Ga0193722_1001325All Organisms → cellular organisms → Bacteria5755Open in IMG/M
3300020170|Ga0179594_10224703All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300021086|Ga0179596_10347226All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300024181|Ga0247693_1053259All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300025922|Ga0207646_10203015All Organisms → cellular organisms → Bacteria1791Open in IMG/M
3300025922|Ga0207646_10369611All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis1296Open in IMG/M
3300025942|Ga0207689_11011782All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300026285|Ga0209438_1157312All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300026298|Ga0209236_1065178All Organisms → cellular organisms → Bacteria1750Open in IMG/M
3300026300|Ga0209027_1318413All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300026301|Ga0209238_1264653All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300026306|Ga0209468_1011570All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes3273Open in IMG/M
3300026306|Ga0209468_1064519All Organisms → cellular organisms → Bacteria1232Open in IMG/M
3300026320|Ga0209131_1246122All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300026324|Ga0209470_1134937All Organisms → cellular organisms → Bacteria1090Open in IMG/M
3300026527|Ga0209059_1108919All Organisms → cellular organisms → Bacteria1094Open in IMG/M
3300026538|Ga0209056_10015250All Organisms → cellular organisms → Bacteria → Proteobacteria7646Open in IMG/M
3300026540|Ga0209376_1142799All Organisms → cellular organisms → Bacteria1157Open in IMG/M
3300026542|Ga0209805_1126116All Organisms → cellular organisms → Bacteria1205Open in IMG/M
3300026547|Ga0209156_10355869All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300027671|Ga0209588_1120086All Organisms → cellular organisms → Bacteria842Open in IMG/M
3300027787|Ga0209074_10129412All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300027862|Ga0209701_10440331All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300027882|Ga0209590_10000199All Organisms → cellular organisms → Bacteria17223Open in IMG/M
3300027909|Ga0209382_10114681All Organisms → cellular organisms → Bacteria3146Open in IMG/M
3300031740|Ga0307468_100802780All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300033812|Ga0364926_103896All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300033813|Ga0364928_0178736All Organisms → cellular organisms → Bacteria528Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil36.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil15.69%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil11.76%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil7.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.90%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.90%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.94%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.96%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.96%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.98%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300011409Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024181Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026306Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300033812Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17EnvironmentalOpen in IMG/M
3300033813Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25384J37096_1019424013300002561Grasslands SoilMSYQFELDQSNRSLRFPVIMMAGIVVTVIAAYAFAACGDRTPDQARASEPVSQPT
JGI25613J43889_1010965113300002907Grasslands SoilMSYQFELNQSNRSLRFPVILMAAIVSIAIAAYAFAACGDRNPDQARASEPA
Ga0063356_10533974923300004463Arabidopsis Thaliana RhizosphereMSYQFSIDQTNRSLKFPVILMAGIVSTVIAGYAFVACGDRTPDQAAASERVVTPTSSVPV
Ga0062595_10051819713300004479SoilMSYQFSIDQTNRSLKFPVILMAGIVCTVIAGYAFAACGDRTPDQAR
Ga0062592_10089342913300004480SoilMSYQFSIDQTNRSLKFPVILMAGIVCTVIAGYAFAACGDRAPDQAR
Ga0066677_1043013223300005171SoilMSYPFELNRSNRAMRFPVIMMAVIFSMVVAAYVIAACNDRSPDQARASE
Ga0066677_1065065123300005171SoilMSYQFSLDQSNRSLRFPVLVMAGIFSAVIGAYTFAACNERTPDQ
Ga0066684_1079980513300005179SoilMSYQFELNRSNRAMRFPVIMMAVIFSMVVAAYVIAACNDRSPDQARASEVSPPKSTV
Ga0066685_1032595713300005180SoilMSYQFELDQSNRSLRFPVILMAAIVCTVIAAYAFAACSDRNPDQARAGEPVSTTTSTVPVGNA
Ga0070703_1000311913300005406Corn, Switchgrass And Miscanthus RhizosphereMSYQFELNQSNRSLRFPVILMTAIVSMVIAAYAFAACGDRNPDQARASESAAATSS
Ga0070705_10137856623300005440Corn, Switchgrass And Miscanthus RhizosphereMSYQFELNQSNRSLRFPVILMTAIVSMVIAAYAFAACGDRNPDQARA
Ga0066682_1092388313300005450SoilMSYQFELDRSNRSLRFPVILMAAIVCMVTATYVFAACGDRNPDQARASEPVSSSS
Ga0070706_10068238313300005467Corn, Switchgrass And Miscanthus RhizosphereMSYQFELNQSNRSLRFPVILMAGIVSAVIAAYTFAACSDRNPDQARASEPVSQPTANAPV
Ga0066698_1056076313300005558SoilMSYQFELDQSNRSLRFPVILMAGIVCIVIAAYAFAACGDRNPDQARASEPVGSPTSTEPVSNASTEKPA
Ga0066700_1041594313300005559SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAAYAFAACGDRNPDQARASEPVGSTTSTTV
Ga0066708_1080331423300005576SoilMSYQFELNRSNRAMRFPVIMMAVIFSMVVAAYVIAACNDRSPDQAR
Ga0066653_1027152723300006791SoilMSYQFELDRSNRSLRFPVILMAAIVCMVTATYVFAACGDRNPDQARASEPV
Ga0066659_1134657923300006797SoilMSYQFELNQSNRSLRFPVILMAGIVSTVIAAYAFAACGDRNPDQARASEPAGSTTS
Ga0075431_10006797213300006847Populus RhizosphereMSYQFSLDQTNRSLRFPAIVMAGIVCTVAAAYTFAACGDRSPDQAAAGERVVTPSSDVAVSNVSTETSV
Ga0075425_10072577723300006854Populus RhizosphereMSYQFELDRSNRSFRFPVILMAAIVCMVTAAYVFAACGDRNPDQARASEPVTSSS
Ga0075425_10167506823300006854Populus RhizosphereMSYQFELNQSNRSLRFPVILMAGIVSAVIAAYTFAACSDRNPD
Ga0068865_10066828723300006881Miscanthus RhizosphereMSYQFSIDQTNRSLKFPVILMAGIVCTVIAGYAFAACGDRTPDQARAGERVVTPPATSSVPVR
Ga0075426_1067084523300006903Populus RhizosphereMSYQFELEKSNRSLRFPVIMMAGIVVTVIAAYAFAACGDRSPDQARAGEPTTQPTSTTAVGNTNSGTE
Ga0079218_1149038023300007004Agricultural SoilMSYQFSIDQSNRSLRFPVIVMAGIVCTVIAAYSFAACGDRT
Ga0079218_1224382713300007004Agricultural SoilMSYQFSIDQTNRSLKVPLIVMTGIVCTVVAAYAIAACG
Ga0099791_1023840523300007255Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAAYAFAACGDRNPD
Ga0099795_1047896313300007788Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAAYAFAACSDRNPDQA
Ga0099827_1037704623300009090Vadose Zone SoilMSYQFELNQSNRALRFPVILMAAIVCTAIAAYAFAACGDRNPDQARAGEPVGSKSSTTVP
Ga0099827_1069386523300009090Vadose Zone SoilMSYQFSLDPSNRSLRFPVLVMAGIFSAVIGAYTFAACNERTP
Ga0134086_1006698423300010323Grasslands SoilMSYQFELDQSNRSLRFPVILMAAIVCTVIAAYAFAACSDRNPDQARAGEPVSTTTSTVPVGNASTEK
Ga0134086_1012276613300010323Grasslands SoilMSYQFELNQSSRSFRFPVILMAAIVSTVSAAYSFAACGDRNPDQARASEPVGSTSSST
Ga0134080_1000479213300010333Grasslands SoilMSYQFELDRSNRSLRFPVILMAAIVSMVIAAYTFA
Ga0134071_1059490123300010336Grasslands SoilMSYQFELDRSNRSLRFPVTLMAAIVCMVTATYMFAACGDRNPDQARASEPVS
Ga0137323_103190623300011409SoilMSYQFSIDQTSRSLKFPVIVMAGIVCTVVAAYAFAACGDRTPDQAAAGERVSTPTSSVPT
Ga0137389_1090682123300012096Vadose Zone SoilMSYQFQLDQSNRSLRFPVIMMAAIVCTVIAAYAFAACGDRTPDQARA
Ga0137364_1003858833300012198Vadose Zone SoilMSYRFELNQSNRSLRFPVILMAGIVCTVIAAYAFAACSDRNPDQARA
Ga0137383_1086284713300012199Vadose Zone SoilMSYQFELDQSNRSLRFPVILMAGIVCTVIAVYAFAACGDRNPDQARAGEPVSTTTSTVPVSNVSATKPA
Ga0137382_1006276313300012200Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAAYAFAACGDRNPDQARASEPVGS
Ga0137382_1073488423300012200Vadose Zone SoilMSYQFELNQSSRSFRFPVILMAAIVSTVIAAYSFAACGDRNPDQARASEPVGSTSSSTVPGSNGSTGS
Ga0137365_1001016773300012201Vadose Zone SoilMSYQFELDQSNRSLRFPVILMAGIVCTVIAAYAFAACGDRNPDQARA
Ga0137363_1040728713300012202Vadose Zone SoilMSYQFQLDQSNRSLRFPVIMMAAIVCTVIAAYAFAACSD
Ga0137399_1020869523300012203Vadose Zone SoilMSYQFELNHSNRSLRFPVILMAAIVCMVIAAYAFAACGDRNPDQARASEPVGATSSTTTPPP
Ga0137362_1100585323300012205Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVSTVIAAYAFAACGDRNPDQ
Ga0137380_1047566213300012206Vadose Zone SoilMSYQFELNQSNRSFRFPVILMAAIVCTVIAAYAFA
Ga0137381_1136622023300012207Vadose Zone SoilMSYQFELNRSNRSLRFPVILMAAIVSMVIAAYTFAACGDRSPDQARASEPVSQPTGSVPNNV
Ga0137376_1000863063300012208Vadose Zone SoilMSYQFELNRSNRSLRFPVILMAGLVVTVLAAYTFAACGDRNPDQARASERVSQPTGDVSSGAS
Ga0137379_1008412333300012209Vadose Zone SoilMSYQFSLDQSNRSLRFPVLVMAGIFSAVIGAYTFAACNERTPHQAA
Ga0137377_1075375523300012211Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAAIVCTVIAAYAFAACGDRNPDQA
Ga0137377_1160541123300012211Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAVYAFAACG
Ga0137367_1041145313300012353Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAAIVCTVIAAYAFAACGDRSPDQ
Ga0137375_1100087513300012360Vadose Zone SoilMSYQFELNQASRSFRFPVILMAAIVSTVIAAYSFA
Ga0137373_1039161313300012532Vadose Zone SoilMSYQFELNRSNRSLRFPVILMAAIVCTVIAAYAFAAC
Ga0137358_1027069023300012582Vadose Zone SoilMSYQFELNQASRSFRFPVILMAAIVSTVIAAYTFAACGDRSPDQARASEPVGST
Ga0137397_1024670513300012685Vadose Zone SoilMSYQFELNQTNRSLRFPVVLMAGIVCMVTAAYVFAACGD
Ga0137397_1106249213300012685Vadose Zone SoilMSYQFELNQASRSFRFPVILMAAIVSTVIAAYTFAACSDRSPDQARASEPVGSTSAST
Ga0137395_1054525623300012917Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAAIVCMVIAAYAFAACGDRNPDQARASEPVGATSS
Ga0137396_1020837613300012918Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAAIVCMVIAAYAFAACGERTPDQARASEPVGATSSTTTPPPTPVSTEK
Ga0137359_1085994023300012923Vadose Zone SoilMSYQCELNQSNRSLRFPVILMAAIVCMAVAAYAFAACGDRNPDQARASEPVGATSSTTTPLPTPVS
Ga0137419_1120781923300012925Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAAYAFAACGDRNPDQARASEPVGSTTSTTVP
Ga0137416_1033221813300012927Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAAYSFAACGDRNPDQARASE
Ga0137416_1076861313300012927Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAAYAFAACGDRNPDQARASEPVGST
Ga0134077_1023428823300012972Grasslands SoilMSYQFELDRSNRSLRFPVTLMAAIVCMVTATYMFAACGDRNPD
Ga0134076_1037376713300012976Grasslands SoilMSYQFELNQSNRSLRFPVILMAGIVSAVIAAYSFAACSDRNPDQARASEPVGSTSS
Ga0137411_134126533300015052Vadose Zone SoilMSYQFELNQSNRSLRFPVILMAGIVSTVIAAYAFAACGDRNPDQARASEPVGSTTSTTVPVRTARARR*
Ga0134089_1027291123300015358Grasslands SoilMSYQFELDQSNRSLRFPVMLMAGIVSLVIAAYAFAACGERSPDQ
Ga0134085_1025727413300015359Grasslands SoilMSYQFELNQSSRSFRFPVILMAAIVSTVIAAYTFAACSERNPDQARASEPVGSTSSS
Ga0134085_1032503213300015359Grasslands SoilMSYQFELDQSNRSLRFPVMLMAGIVSLVIAAYAFAACGERSPDQARASEPISQPTGAVPASNGSTDKP
Ga0134085_1037228523300015359Grasslands SoilMSYQFELNKSNRSLRFPVILMAAIVCTVIAAYAFAACGDRNPD
Ga0134069_121616123300017654Grasslands SoilMSYQFELDRSNRSLRFPVILMAAIVCMVTATYVFAACGDRSPDQARASEPVSSSSSSVTPVST
Ga0134083_1014034413300017659Grasslands SoilMSYTFELDRSNRSLRFPVILMAAIVCMVTATYVFAACGDRNPDQARASEPVTSSS
Ga0184610_127217413300017997Groundwater SedimentMSYQFSIDQSNRSLRFPVILMAGIVGTVIAAYAFAACGDRSPDQAAAGER
Ga0184623_1009389423300018056Groundwater SedimentMSYQFSIDQSNRSLRFPIILMAGIVGTVIAAYAFAACGDRSPDQA
Ga0184629_1001608933300018084Groundwater SedimentMSYQFSIDQTSRSLRFPVILMAGIVCTVVAAYAFAACGDRTPDQAAAGERVVTSSVSNETPVPP
Ga0066667_1220196723300018433Grasslands SoilMSYQFELDQSNRSLRFPVILMAGIVCIVIAAYAFAACGDRNPDQARASEPVGSPTSTEPVSNASTE
Ga0193722_100132563300019877SoilMSYQFELNQSNRSLRFPVILMAAIVSMVIAVYAFAACGDRTPDQARASTTTTPTPTPTPDRGHQN
Ga0179594_1022470313300020170Vadose Zone SoilMSYQFELNQASRSFRFPVILMAAIVSTVIAAYTFAACGDRSPDQARASEPVRSTSAST
Ga0179596_1034722623300021086Vadose Zone SoilMSYQFQLDQSNRSLRFPVIMMAAIVCTVIAAYAFAACSDRTPDQARASEPVSQPTVAAPVSSAS
Ga0247693_105325913300024181SoilMSYQFSIDQTNRSLKFPVILMAGIVCTVIAGYAFAACGDRTPDQARAGE
Ga0207646_1020301533300025922Corn, Switchgrass And Miscanthus RhizosphereMSYQFELEKSNRSLRFPVIMMAGIVVTVIAAYAFAA
Ga0207646_1036961123300025922Corn, Switchgrass And Miscanthus RhizosphereMSYQFSIDQTNRSLKFPVILMAGIVCTVIAGYAFAACGDRTPDQARAGERVVTPPATSSVPVSNVSSE
Ga0207689_1101178223300025942Miscanthus RhizosphereMSYQFSIDQTNRSLKFPVILMAGIVCTVIAGYAFAACGDRTPDQ
Ga0209438_115731213300026285Grasslands SoilMSYQFELNQASRSFRFPVILMAAIVSTVIAAYTFAACSDRSPDQARASEPVGSTSASTVPVSNG
Ga0209236_106517813300026298Grasslands SoilMSYQFELDKSNRSLRFPVILMAAIVCTVIAAYAFAACGDRSPDQARAGEPVGSKS
Ga0209027_131841313300026300Grasslands SoilMSYQFSLDQSNRSLRFPVLVMAGIFSAVIGAYTFAACNER
Ga0209238_126465323300026301Grasslands SoilMSYQFELNRSNRTMRFPVIMMAVIFSMVVAAYVIAACNDRSPDQARASEVSPPKSTVPVSNVSTTT
Ga0209468_101157013300026306SoilMSYQFELDRSNRTLRFPVILMAMLVVTAFVAYAFAACGERHPDQARASELPT
Ga0209468_106451913300026306SoilMSYQFELDRSNRSLRFPVILMAAIVCMVTATYVFAACGDRNPDQARASEPVTSS
Ga0209131_124612213300026320Grasslands SoilMSYQFELNQASRSFRFPVILMAAIVSTVIAAYTFAACGDRSPDQARASEPVGSTSASTVPVSNRGTG
Ga0209470_113493723300026324SoilMSYQFSLDQSNRSLRFPVLVMAGIFSAVIGAYTFAA
Ga0209059_110891923300026527SoilMSYQFELNQSNRSLRFPVILMAGIVSTVIAAYAFAACGERNPDQARASEPAGS
Ga0209056_1001525073300026538SoilMSYQFSLDQSNRSLRFPVLVMAGIFSAVIGAYTFAACNERTPD
Ga0209376_114279923300026540SoilMSYQFELNQSNRSLRFPVILMAGIVCTVIAVYAFAACGDRNPDQAR
Ga0209805_112611623300026542SoilMSYQFSLDQSNRSLRFPVLVMAGIFSAVIGAYTFA
Ga0209156_1035586913300026547SoilMSYQFELNRSNRAMRFPVIMMAVIFSMVVAAYVIT
Ga0209588_112008623300027671Vadose Zone SoilMSYQFELDQSNRSLRFPVILMAGIVCTAIAAYAFAACGDRNPDQARA
Ga0209074_1012941223300027787Agricultural SoilMSYQFELNQSNRSLRFPVILMTAIVSMVIAAYVFAACG
Ga0209701_1044033113300027862Vadose Zone SoilMSYQFELNQSNRALRFPVILMAAIVCTAIAAYAFAACGDRNPDQARASESSTTVPVS
Ga0209590_1000019913300027882Vadose Zone SoilMSYQFELDKSNRSLRFPVILMAAIVCTVIAAYAFAACG
Ga0209382_1011468133300027909Populus RhizosphereMSYQFELDQSNRALRFPVMLMAAIVSMVIAAYVFAACGDRNPDQARASEPV
Ga0307468_10080278013300031740Hardwood Forest SoilMSYQFELNQSNRSLRFPVLLMTAIVSMVIAAYAFAACGDRHPDQARASE
Ga0364926_103896_3_2033300033812SedimentMSYQFSIDQSNRSLRFPVILMAGIVGTVIAAYAIAACGDRTPDQASAGEPVVSKPAAVVPVSNVSNE
Ga0364928_0178736_303_5273300033813SedimentMSYQFSIDQTSRSLRFPVILMAGIVCTVVAAYAFAACGDRTPDQAAAGERVVANSVATSPVTNVGNEAPARVISG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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