NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100816

Metagenome / Metatranscriptome Family F100816

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100816
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 52 residues
Representative Sequence AASILTGLQVFFLSSAIGDLLEKKKEPNRARNSAVVLATIFLVAFYSFRRYFH
Number of Associated Samples 73
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.99 %
% of genes near scaffold ends (potentially truncated) 98.04 %
% of genes from short scaffolds (< 2000 bps) 79.41 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (88.235 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(56.863 % of family members)
Environment Ontology (ENVO) Unclassified
(56.863 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(56.863 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 59.26%    β-sheet: 0.00%    Coil/Unstructured: 40.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF02782FGGY_C 52.94
PF00365PFK 3.92
PF11154DUF2934 2.94
PF16640Big_3_5 1.96
PF03544TonB_C 1.96
PF02567PhzC-PhzF 1.96
PF07883Cupin_2 0.98
PF02572CobA_CobO_BtuR 0.98
PF07282OrfB_Zn_ribbon 0.98
PF01436NHL 0.98
PF01609DDE_Tnp_1 0.98
PF03928HbpS-like 0.98
PF08309LVIVD 0.98
PF00408PGM_PMM_IV 0.98
PF13358DDE_3 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG02056-phosphofructokinaseCarbohydrate transport and metabolism [G] 3.92
COG0384Predicted epimerase YddE/YHI9, PhzF superfamilyGeneral function prediction only [R] 1.96
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 1.96
COG0033Phosphoglucomutase/phosphomannomutaseCarbohydrate transport and metabolism [G] 0.98
COG1109PhosphomannomutaseCarbohydrate transport and metabolism [G] 0.98
COG2109ATP:corrinoid adenosyltransferaseCoenzyme transport and metabolism [H] 0.98
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.98
COG3293TransposaseMobilome: prophages, transposons [X] 0.98
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.98
COG5276Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domainFunction unknown [S] 0.98
COG5421TransposaseMobilome: prophages, transposons [X] 0.98
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.98
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms88.24 %
UnclassifiedrootN/A11.76 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005180|Ga0066685_10758099All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300005181|Ga0066678_10378200All Organisms → cellular organisms → Bacteria → Acidobacteria937Open in IMG/M
3300005450|Ga0066682_10136893All Organisms → cellular organisms → Bacteria → Acidobacteria1554Open in IMG/M
3300005557|Ga0066704_10028412All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter3386Open in IMG/M
3300005557|Ga0066704_10098669All Organisms → cellular organisms → Bacteria → Acidobacteria1915Open in IMG/M
3300005559|Ga0066700_10285010All Organisms → cellular organisms → Bacteria1161Open in IMG/M
3300005569|Ga0066705_10047777All Organisms → cellular organisms → Bacteria2390Open in IMG/M
3300005586|Ga0066691_10010984All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4216Open in IMG/M
3300006796|Ga0066665_10005407All Organisms → cellular organisms → Bacteria6857Open in IMG/M
3300007265|Ga0099794_10319800All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300007265|Ga0099794_10395880All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300009088|Ga0099830_10147726Not Available1805Open in IMG/M
3300009088|Ga0099830_10675037All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300009137|Ga0066709_100142929All Organisms → cellular organisms → Bacteria → Acidobacteria3042Open in IMG/M
3300010304|Ga0134088_10331064All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300010322|Ga0134084_10295719All Organisms → cellular organisms → Bacteria → Acidobacteria600Open in IMG/M
3300010333|Ga0134080_10332538All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium688Open in IMG/M
3300010358|Ga0126370_11083630All Organisms → cellular organisms → Bacteria → Acidobacteria737Open in IMG/M
3300010361|Ga0126378_11327161All Organisms → cellular organisms → Bacteria → Acidobacteria814Open in IMG/M
3300010366|Ga0126379_12762387All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300010366|Ga0126379_13828324All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300011120|Ga0150983_12897437All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300011269|Ga0137392_10196850Not Available1647Open in IMG/M
3300011269|Ga0137392_10493450All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300011269|Ga0137392_11195422All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300011269|Ga0137392_11399665All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300011269|Ga0137392_11558090All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300011269|Ga0137392_11590881All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300011270|Ga0137391_10167715All Organisms → cellular organisms → Bacteria → Acidobacteria1914Open in IMG/M
3300012096|Ga0137389_10648124All Organisms → cellular organisms → Bacteria908Open in IMG/M
3300012096|Ga0137389_11023841All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300012096|Ga0137389_11332162All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300012189|Ga0137388_10263317Not Available1572Open in IMG/M
3300012189|Ga0137388_11565685All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300012199|Ga0137383_10086554All Organisms → cellular organisms → Bacteria2268Open in IMG/M
3300012199|Ga0137383_10649238All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium771Open in IMG/M
3300012199|Ga0137383_11255729All Organisms → cellular organisms → Bacteria → Acidobacteria530Open in IMG/M
3300012199|Ga0137383_11259551All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300012200|Ga0137382_10185300Not Available1426Open in IMG/M
3300012200|Ga0137382_11307013All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300012202|Ga0137363_10826628All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300012202|Ga0137363_11550749All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300012205|Ga0137362_10067795All Organisms → cellular organisms → Bacteria2948Open in IMG/M
3300012205|Ga0137362_10129669All Organisms → cellular organisms → Bacteria → Acidobacteria2144Open in IMG/M
3300012206|Ga0137380_10341679Not Available1336Open in IMG/M
3300012207|Ga0137381_11795280All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300012208|Ga0137376_10120653All Organisms → cellular organisms → Bacteria2237Open in IMG/M
3300012208|Ga0137376_10176147Not Available1846Open in IMG/M
3300012209|Ga0137379_10024700All Organisms → cellular organisms → Bacteria → Acidobacteria5775Open in IMG/M
3300012209|Ga0137379_11053021All Organisms → cellular organisms → Bacteria → Acidobacteria719Open in IMG/M
3300012210|Ga0137378_11558840All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300012210|Ga0137378_11818536All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis513Open in IMG/M
3300012285|Ga0137370_10131147Not Available1437Open in IMG/M
3300012349|Ga0137387_10038179Not Available3143Open in IMG/M
3300012349|Ga0137387_10423796All Organisms → cellular organisms → Bacteria965Open in IMG/M
3300012351|Ga0137386_10155614Not Available1636Open in IMG/M
3300012351|Ga0137386_10867934All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
3300012361|Ga0137360_11003184All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300012363|Ga0137390_11366871All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300012917|Ga0137395_10086650All Organisms → cellular organisms → Bacteria2055Open in IMG/M
3300012923|Ga0137359_10582435All Organisms → cellular organisms → Bacteria983Open in IMG/M
3300012927|Ga0137416_11302672All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300012929|Ga0137404_10607141All Organisms → cellular organisms → Bacteria984Open in IMG/M
3300012930|Ga0137407_10379677Not Available1306Open in IMG/M
3300012972|Ga0134077_10545926All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300014166|Ga0134079_10019906All Organisms → cellular organisms → Bacteria2155Open in IMG/M
3300015051|Ga0137414_1132055All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300015054|Ga0137420_1211896All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300017943|Ga0187819_10522458All Organisms → cellular organisms → Bacteria → Acidobacteria676Open in IMG/M
3300018064|Ga0187773_10459770All Organisms → cellular organisms → Bacteria → Acidobacteria750Open in IMG/M
3300020170|Ga0179594_10156052All Organisms → cellular organisms → Bacteria845Open in IMG/M
3300020583|Ga0210401_10516652All Organisms → cellular organisms → Bacteria1057Open in IMG/M
3300021046|Ga0215015_10952175All Organisms → cellular organisms → Bacteria → Acidobacteria726Open in IMG/M
3300021432|Ga0210384_10673912All Organisms → cellular organisms → Bacteria → Acidobacteria926Open in IMG/M
3300021559|Ga0210409_11156498All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300022724|Ga0242665_10008657All Organisms → cellular organisms → Bacteria1996Open in IMG/M
3300024330|Ga0137417_1058832All Organisms → cellular organisms → Bacteria → Acidobacteria3150Open in IMG/M
3300024330|Ga0137417_1089990All Organisms → cellular organisms → Bacteria2480Open in IMG/M
3300026310|Ga0209239_1313712All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300026320|Ga0209131_1001327All Organisms → cellular organisms → Bacteria → Acidobacteria17116Open in IMG/M
3300026332|Ga0209803_1082892All Organisms → cellular organisms → Bacteria → Acidobacteria1339Open in IMG/M
3300026333|Ga0209158_1053763All Organisms → cellular organisms → Bacteria → Acidobacteria1636Open in IMG/M
3300026333|Ga0209158_1057927All Organisms → cellular organisms → Bacteria → Acidobacteria1560Open in IMG/M
3300026334|Ga0209377_1208205All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300026356|Ga0257150_1026601All Organisms → cellular organisms → Bacteria → Acidobacteria823Open in IMG/M
3300026359|Ga0257163_1033875All Organisms → cellular organisms → Bacteria → Acidobacteria805Open in IMG/M
3300026374|Ga0257146_1012000All Organisms → cellular organisms → Bacteria1412Open in IMG/M
3300026514|Ga0257168_1009200All Organisms → cellular organisms → Bacteria1835Open in IMG/M
3300026532|Ga0209160_1003072All Organisms → cellular organisms → Bacteria → Acidobacteria13745Open in IMG/M
3300026555|Ga0179593_1000497All Organisms → cellular organisms → Bacteria → Acidobacteria2042Open in IMG/M
3300026557|Ga0179587_10019430All Organisms → cellular organisms → Bacteria3648Open in IMG/M
3300026557|Ga0179587_10128057All Organisms → cellular organisms → Bacteria → Acidobacteria1565Open in IMG/M
3300026557|Ga0179587_10217508All Organisms → cellular organisms → Bacteria1214Open in IMG/M
3300027846|Ga0209180_10694473All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300027882|Ga0209590_11068147All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300028536|Ga0137415_10970722All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300031754|Ga0307475_10150079Not Available1850Open in IMG/M
3300031754|Ga0307475_10356312All Organisms → cellular organisms → Bacteria1175Open in IMG/M
3300031962|Ga0307479_10110934All Organisms → cellular organisms → Bacteria2668Open in IMG/M
3300031962|Ga0307479_11170155All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300032892|Ga0335081_11970330All Organisms → cellular organisms → Bacteria → Acidobacteria624Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil56.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil14.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.84%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.92%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.98%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.98%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026356Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-AEnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066674_1013998613300005166SoilLTGLQVFFLGSAIADMLEKKKNASRLRNSWVIVFTVFVIAFYSFTRYLH*
Ga0066685_1075809913300005180SoilALFHELALVEAAASILTGLQVFFLSSAIADMLEKKKEPNRVRNSAVVLVTVFLVAFYSFTRYFH*
Ga0066678_1037820023300005181SoilLALFDQYALVEMAASIITALQVFFLSSAIGDLLEKKKETNRARNSAVVLITIFLVAFYLFRRYFH*
Ga0066682_1013689313300005450SoilALFEQYALVEMAASIITALQVFFLSSAIGDLLEKKKETNRTRNSAVVLIAIFLVAFYLFRRYFH*
Ga0066704_1002841213300005557SoilSILTGLQVFFLSSAIGDLLEQEKAPNRVRNSAVVLVTVFLVALYSFTRYFH*
Ga0066704_1009866913300005557SoilTALQVFFLSSAIGDLLEKKKETNRTRNSVVVLVTIFLVAFYSFRKYFH*
Ga0066700_1028501013300005559SoilLQVFFLSSAIGDLLEKKKAANRTRNSAVVLVTIFLVAFYSFRKYFH*
Ga0066705_1004777743300005569SoilLVEVAASILTGLQVFFLSSTIGDLLEREKAPNRVRNSAVVLVTVFLVALYSFTRYFH*
Ga0066691_1001098413300005586SoilVVASILTGLQVFFLSSAIGDLLDKKKEPSRARNSAVVLVTILLVTFYSVTRYLR*
Ga0066665_1000540713300006796SoilSIVTALQAYFVSSAIGDLLEEKKETNRTRNSVAVLMTIFLVAFYSFRKYFH*
Ga0099794_1031980023300007265Vadose Zone SoilQVFFLSSAIGDLLDEKKEPNRARNSAVVLMTVFLVAFYSLTRYFH*
Ga0099794_1039588013300007265Vadose Zone SoilSILTGLQVFFLSAAIGDLLDEKTEPNRARNSAVVLVTVFLAAFYSFTRYFH*
Ga0099830_1014772613300009088Vadose Zone SoilTGLQVFFLSSAIADLLEKNKEPNRVRNSVVVLVTIFLVAFYSFTRYFH*
Ga0099830_1067503713300009088Vadose Zone SoilSVITGLQVFFLSSAIGDVLEKKRESNRARNSAVVLVTVILVAFYSFTKYFH*
Ga0066709_10014292933300009137Grasslands SoilLSSAIGDLLEKKKETNRTRNSAVVLIAIFLVAFYLFRRYFH*
Ga0134088_1033106413300010304Grasslands SoilLVEAAASILTGLQVFFLSSAIADMLEKKKEPNRVRNSAVVLVTVFLVAFYSFTRYFH*
Ga0134084_1029571923300010322Grasslands SoilHQYALVEVAASILTGLQVFFLSSAIGDLLEQEKAPNRVRNSAVVLVTVFLVALYSFTRYFH*
Ga0134080_1033253823300010333Grasslands SoilSIVTALQAYFVSSAIGDLLEEKKETNRTRNSVAVLMTIFLVTFYSFRKYFH*
Ga0126370_1108363023300010358Tropical Forest SoilEVAASLLTGLQVFFLSSAVADYLEQRKEANRTRNSAVVLVTIFLIAFYSFTRYLR*
Ga0126378_1132716113300010361Tropical Forest SoilHQFALVEVVASIVTGLQVFFLTAAIADLLDRRKAPSRARNSAVVLVTLFLVTFYSVTHYLR*
Ga0126379_1276238713300010366Tropical Forest SoilLVEVAASLLTGLQVFFLSSAIADLLEKKKESSRARSSAVVLTTIFLIAFYSFTRYLR*
Ga0126379_1382832423300010366Tropical Forest SoilLVEVAASLLTGLQVFFLSSAIADLMEKKRESNRARSSAVVLATIFLIAFYSFTRYLR*
Ga0150983_1289743723300011120Forest SoilSIGDLLDEKKEPNRARNSAVVLVTVFLVAFYSITRYFH*
Ga0137392_1019685013300011269Vadose Zone SoilQVFFLSSAFGDLLEKKGESNRARNSAVVLVTVFLVAFYSFTKYFH*
Ga0137392_1049345013300011269Vadose Zone SoilLFHQFALVEVAASILTGLQVFFLSSAIGDLLDEKKEPNRARNSAVVLMTVFLVAFYSLTRYFR*
Ga0137392_1119542223300011269Vadose Zone SoilALVEVAASVIMALQVFFLSSAIGDLLEKKRETNRTRNSAVVLVTVFLVAFYSFTKYFH*
Ga0137392_1139966523300011269Vadose Zone SoilVEAAASILTGLQVFFLSSAIADLLEKNKEPNRVRNSAVVLVTVFLVAFYSFTRYFH*
Ga0137392_1155809023300011269Vadose Zone SoilQVFFLSSAFGDLLEKKGESNRARNSAVVLVTVFLVAFYSFTRYFR*
Ga0137392_1159088113300011269Vadose Zone SoilAAASILTGLQVFFLSSAIADLLEKNKEPNRVRNSAVVLVTIFLVAFYSFTRYFH*
Ga0137391_1016771533300011270Vadose Zone SoilAASILTGLQVFFLSSAIADLLEKNKEPNRVRNSVVVLVTIFLVAFYSFTRYFH*
Ga0137389_1064812413300012096Vadose Zone SoilSAIADLLEKNKEPNRVRNSAVVLVTIFLVAFYSFTRYFH*
Ga0137389_1102384113300012096Vadose Zone SoilTIFVAALLHEYALVEVAASVITGLQVFFLSSAFGDLLEKKGESNRARNSAVVLVTVFLVAFYSFTKYFH*
Ga0137389_1133216223300012096Vadose Zone SoilLSSAIGDLLDEKKESNRARNSAVALMTVFLVGFYSFTRYFH*
Ga0137388_1026331713300012189Vadose Zone SoilLSSAIADLLEKNKEPNRVRNSAVVLVTIFLVAFYSFTRYFH*
Ga0137388_1156568513300012189Vadose Zone SoilLLDEKKEPNRARNSAVVLMTVFLVAFYSLTRYFR*
Ga0137383_1008655433300012199Vadose Zone SoilAIADLLEKKKEPNRVRNSAVVLVTVFLVAFYSFTRYFH*
Ga0137383_1064923813300012199Vadose Zone SoilYALVEMAASIITALQVFFLSSAIGDMLEKKKETNRTRNSAVVLVTIFLVAFYSFRKYFY*
Ga0137383_1125572923300012199Vadose Zone SoilHEFALVEMAASILTGLQIFFLSSAIGDLLEKKKEPNRARNSAVVLATIFLVAFYSFRRYFH*
Ga0137383_1125955113300012199Vadose Zone SoilEFALVEMAASILTGLQVFFLSSAIGDLLEKKKEPNRARNSAVVLATIFLVAFYSFRRYFH
Ga0137382_1018530023300012200Vadose Zone SoilGLQVFFLSSAIGDLLDEKKESNRARNSVVALMTVFLVGFYSFTRYFR*
Ga0137382_1130701323300012200Vadose Zone SoilGLQVFFLSSAIGDLLDEKKESNQARNSAVALMTVFLVGFYFFTRYFH*
Ga0137363_1082662823300012202Vadose Zone SoilEVAASVLTGLQVFFLSSAIGDLLDEKKESNRARNSAVALMTVFLVGFYSFTRYFH*
Ga0137363_1155074923300012202Vadose Zone SoilVIMALQVFFLSSAIGDLLEKKRETNRTRNSAVLLVTVFLVAFYSFTKYFH*
Ga0137362_1006779513300012205Vadose Zone SoilIGDLLDEKKESNRARNSAVALMTVSLVAFYSFTRYFH*
Ga0137362_1012966913300012205Vadose Zone SoilAVFVVALFHQFALVEVAASIFTGLQVFFLSSAIGDLLDEKKESNRARNSAVALMTVSLVAFYSFTRYFH*
Ga0137380_1034167923300012206Vadose Zone SoilDLLEKNKEPNRARNSVVVLVAIFLVAFYSFTRYFH*
Ga0137381_1179528013300012207Vadose Zone SoilAASILTGLQVFFLSSAIGDLLEKKKEPNRARNSAVVLATIFLVAFYSFRRYFR*
Ga0137376_1012065313300012208Vadose Zone SoilQFALVEVAASILTGLQVFFLSSAIGDLLDEKKESNRARNSAVALMTVFLVGFYFFTRYFH
Ga0137376_1017614713300012208Vadose Zone SoilQFALVEVAASILTGLQVFFLSSAIGDLLDEKKESNRARNSVVALMTVFLVGFYSFTRYFH
Ga0137379_1002470063300012209Vadose Zone SoilRQYALVEVAASVLTGLQVFFMSSTIGDLLDKRKEPNRARTSAVVLFTIFLVAFYYFTRYLR*
Ga0137379_1105302123300012209Vadose Zone SoilAASILTGLQVFFLSSAIGDLLEKKKEPNRARNSAVVLATIFLVAFYSFRRYFH*
Ga0137378_1155884023300012210Vadose Zone SoilSSAIADLLEKKKEPNRVRNSAVVLVTVFLVAFYSFTRYFH*
Ga0137378_1181853623300012210Vadose Zone SoilAVFVAALFRQYALVEVAASVLTGLQVFFMSSTIGDLLDKRKEPNRARTSALVLFTIFLVAFYYFTRYLH*
Ga0137370_1013114713300012285Vadose Zone SoilIGDLLEQEKAPNRVRNSAVVLVTVFLVALYSFTRYFH*
Ga0137387_1003817943300012349Vadose Zone SoilLQVFFLSSAIGDLLEKKKEPNRARNSAVVLATIFLVAFYSFRRYFH*
Ga0137387_1042379613300012349Vadose Zone SoilVFFLSSAIVDMLEEKRESNRARNSAVVLVTVFLVAFYSFTGYFR*
Ga0137386_1015561413300012351Vadose Zone SoilLFHELALVEVAASILTGLQVFFLSSAIADLLEKKKEPNRVRNSAVVLVTVFLVAFYSFTRYFH*
Ga0137386_1086793413300012351Vadose Zone SoilAIGDMLEKKKETNRTRNSAVVLVTIFLVAFYSFRKYFY*
Ga0137360_1100318423300012361Vadose Zone SoilAALLREYALVEVAASVIMALQVFFLSSAIGDLLEKKRETNRTRNSAVLLVTVFLVAFYSFTKYFH*
Ga0137390_1136687113300012363Vadose Zone SoilIADLLEKNKEPNRVRNSVVVLVTIFLVAFYSFTRYFH*
Ga0137395_1008665013300012917Vadose Zone SoilVAASVITGLQVFFLSSAIGDLLGERRQSNRARNSAVVLVTVFLVAFYSFTRYFR*
Ga0137359_1058243513300012923Vadose Zone SoilAIGDLLDEKKESNRARNSAVVLMTVFLVGFYSFTRYFH*
Ga0137416_1130267223300012927Vadose Zone SoilFHQYALVEIAASILTGLQVFFLSAAVGDLLDEKKEPNRARNSAVVLVTVFLVAFYSFTRYFH*
Ga0137404_1060714123300012929Vadose Zone SoilFFLSSAIGDLLDEKKESNRARNSAVALMTVSLVAFYSFTRYFH*
Ga0137407_1037967723300012930Vadose Zone SoilSVITGLHVFFLSSAIGDLLEEKRESNRARNSALVLTTVFLVAFYSFTKYFH*
Ga0134077_1054592623300012972Grasslands SoilAIGDLLEEKKETNRTRNSVAVLMTIFLVAFYSFRKYFH*
Ga0134079_1001990613300014166Grasslands SoilVFFLSSAIGDLLDEKKESNRARNSVVALMTVFLVGFYSFTRYFH*
Ga0137414_113205523300015051Vadose Zone SoilFHQFALVEVAASVLTGLQVFFLSSAIGDLLDEKKESNRARNSAVALMTVFLVGFYSFTRYFH*
Ga0137420_121189613300015054Vadose Zone SoilVEVAAIILTGLQVFFLSSAIGGLLDEKKESNRARNSAVALMTVFLVGFYSFTRYFH*
Ga0187819_1052245823300017943Freshwater SedimentAIGDLLDEKKEPNRARNSAVVLVTVFLVAFYSVTRFLH
Ga0187773_1045977023300018064Tropical PeatlandILTGLQVFFLSSSIGDLLDEKKEANRPRNAAVVLVTVFLVAFYSFTRYFR
Ga0179594_1015605223300020170Vadose Zone SoilSSAIGDLLDEKKESNRARNSAVALMTVFLVGFYSFTRYFH
Ga0210401_1051665223300020583SoilIALFHQFALVEVAASILTGLQVLFLSSSIGDLLDEKKEPNRARNSAVVLVTVFLVAFYSFTRYFH
Ga0215015_1095217523300021046SoilVGSEMCIIDRVEVVASVLTGLQVFFLSSAIGDMLEKNEPNRARNSTVVLTTILLLAFYSFTRYFH
Ga0210384_1067391223300021432SoilFVVALFHQYALVEVAASIVTGLQVFFLSSAIGDLLEEKKEPNRARNSAVVLVTVFLVAFYTFTRYFH
Ga0210409_1115649813300021559SoilILTGLQVFFLSAAIGDLLDEKTELNRARNSAVVLVTVFLVAFYSFTRYFH
Ga0242665_1000865733300022724SoilLSSSIGDLLDEKKEPNRARNSAVVLVTVFLVTFYSITRYFH
Ga0137417_105883233300024330Vadose Zone SoilFTGLQVFFLSSAIGDLLDEKKESNRARNSAVALMTVSLVAFYSFTRYFH
Ga0137417_108999033300024330Vadose Zone SoilIFTGLQVFFLSSAIGDLLDEKKESNRARNSAVALMTVSLVAFYSFTRYFH
Ga0209239_131371213300026310Grasslands SoilVFFLSSAIGDLLDEKKESNRARNSAVALMTVFLVGFYSFTRYFH
Ga0209131_100132713300026320Grasslands SoilLTGLQVFFLSAAIGDLLDEKTEPNRARNSAVVLVTVFLAAFYSFTRYFH
Ga0209803_108289213300026332SoilIFALFDQFALVEVVASILTGLQVFFLSSAIGDLLDKKKEPSRARNSAVVLVTILLVTFYSVTRYLR
Ga0209158_105376313300026333SoilVVASILTGLQVFFLSSAIGDLLDKKKEPSRARNSAVVLVTILLVTFYSVTRYLR
Ga0209158_105792723300026333SoilFVVALFDQYALVEMAASIVTALQAYFVSSAIGDLLEEKKETNRTRNSVAVLMTIFLVAFYSFRKYFH
Ga0209377_120820513300026334SoilVEVAASILTGLQVFFLSSAIADLLEKKKEPNRVRNSAVVLVTVFLVAFYSFTRYFH
Ga0257150_102660123300026356SoilVFFLSAAIGDLLDEKTELNRARNSAVVLVTVFLVAFYSFTRYFH
Ga0257163_103387513300026359SoilLFHQYALVEVAASILTGLQVFFLSAAIGDLLDEKTELNRARNSAVVLVTVFLVAFYSFTRYFH
Ga0257146_101200013300026374SoilGAIFVVALFHQYALVEVAASILTGLQVFFLSAAIGDLLDEKTELNRARNSAVVLVTVFLVAFYSFTRYFH
Ga0257168_100920043300026514SoilVEVAASILTGLQVFFLSAAIGDLLDEKTELNRARNSAVVLVTVFLVAFYSFTRYFH
Ga0209160_100307213300026532SoilASILTGLQVFFLSSAIGDLLEQEKAPNRVRNSAVVLVTVFLVALYSFTRYFH
Ga0179593_100049733300026555Vadose Zone SoilGDLLDEKKESNRARNSAVALMTVSLVAFYSFTRYFH
Ga0179587_1001943043300026557Vadose Zone SoilASILTGLQVFFLSAAIGDLLDEKTEPNRARNSAVVLVTVFLAAFYSFTRYFH
Ga0179587_1012805723300026557Vadose Zone SoilQVFFLSSAIGDLLDEKKEPNRVRNSAVVLVTIFLVAFYSFTRYFH
Ga0179587_1021750823300026557Vadose Zone SoilMTASIITALQVFFLSSTIGDMLEKKKETNRTRNSAVVLVTIFLVAFYSFRKYFH
Ga0209180_1069447323300027846Vadose Zone SoilFHELALVEAAASILTGLQVFFLSSAIADLLEKNKEPNRVRNSVVVLVTIFLVAFYSFTRYFH
Ga0209590_1106814723300027882Vadose Zone SoilSSAIADLLEKKKEPNRVRNSAVVLVTVFLVAFYSFTRYFH
Ga0137415_1097072213300028536Vadose Zone SoilAIFVVALFHQYALVEIAASILTGLQVFFLSAAVGDLLDEKKEPNRARNSAVVLVTVFLVAFYSFTRYFH
Ga0307475_1015007913300031754Hardwood Forest SoilFHQFALVEVAASILTGLQVFFLSSAIGDLLDEKKEPNRARNSAVALMTVFLVAFYSLTRYFH
Ga0307475_1035631213300031754Hardwood Forest SoilGTTFVAALLHEYALVEVAASVITALQVFFLSSAIGDLLEKKKESNRARNSAVVLVTVFLVAFYSFTRYFR
Ga0307479_1011093413300031962Hardwood Forest SoilGAASVITALQVFFLSSAIGDLLEKKKESNRARNSAVVLVTVFLVAFYSFSRYFR
Ga0307479_1117015523300031962Hardwood Forest SoilLQVFFLSSAIGDLLEKKKESNRARNSAVVLVTVFLVAFYSFTRYFR
Ga0335081_1197033023300032892SoilIAASLLTGLQVFFLSSAIGDLLDEKKEPNRVRNSAVVLVTVFLVAFYSVTRYFH

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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