Metagenome / Metatranscriptome Family F100760

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100760
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	45 residues
Representative Sequence	MNTPCIEQSEAELVVIKGFEGEEIEVSVEQLETRIVPESTAGFLD
Number of Associated Samples	71
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.37 %
% of genes near scaffold ends (potentially truncated)	31.37 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.804 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (19.608 % of family members)
Environment Ontology (ENVO)	Unclassified (39.216 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.745 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02518	HATPase_c	18.63
PF08447	PAS_3	13.73
PF13519	VWA_2	5.88
PF00092	VWA	3.92
PF00072	Response_reg	2.94
PF12770	CHAT	2.94
PF07730	HisKA_3	1.96
PF12705	PDDEXK_1	1.96
PF08811	DUF1800	0.98
PF00756	Esterase	0.98
PF00190	Cupin_1	0.98
PF13620	CarboxypepD_reg	0.98
PF07690	MFS_1	0.98
PF08264	Anticodon_1	0.98
PF00593	TonB_dep_Rec	0.98
PF13474	SnoaL_3	0.98
PF04337	DUF480	0.98
PF13147	Obsolete Pfam Family	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.96
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.96
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.96
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.96
COG3132	Uncharacterized conserved protein YceH, UPF0502 family	Function unknown [S]	0.98
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	43.14 %
Unclassified	root	N/A	40.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.47 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.47 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_14792949	Not Available	578	Open in IMG/M
3300003267\|soilL1_10028637	All Organisms → cellular organisms → Bacteria	6369	Open in IMG/M
3300003319\|soilL2_10171271	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300003321\|soilH1_10114214	All Organisms → cellular organisms → Bacteria → Acidobacteria	1203	Open in IMG/M
3300004114\|Ga0062593_103230852	Not Available	522	Open in IMG/M
3300004463\|Ga0063356_100544516	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300004463\|Ga0063356_103570791	Not Available	670	Open in IMG/M
3300004633\|Ga0066395_10026005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2388	Open in IMG/M
3300004633\|Ga0066395_10728648	Not Available	590	Open in IMG/M
3300005166\|Ga0066674_10009293	All Organisms → cellular organisms → Bacteria	4015	Open in IMG/M
3300005332\|Ga0066388_100358002	All Organisms → cellular organisms → Bacteria	2106	Open in IMG/M
3300005332\|Ga0066388_101218383	Not Available	1289	Open in IMG/M
3300005332\|Ga0066388_101438466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1201	Open in IMG/M
3300005332\|Ga0066388_102368362	Not Available	962	Open in IMG/M
3300005347\|Ga0070668_101278639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300005354\|Ga0070675_100975314	Not Available	778	Open in IMG/M
3300005441\|Ga0070700_101019714	Not Available	681	Open in IMG/M
3300005445\|Ga0070708_100075158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3049	Open in IMG/M
3300005446\|Ga0066686_10176964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1421	Open in IMG/M
3300005558\|Ga0066698_10891854	Not Available	570	Open in IMG/M
3300005598\|Ga0066706_10145686	All Organisms → cellular organisms → Bacteria → Acidobacteria	1776	Open in IMG/M
3300005713\|Ga0066905_100077849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2165	Open in IMG/M
3300005713\|Ga0066905_100359566	Not Available	1166	Open in IMG/M
3300005713\|Ga0066905_102116972	Not Available	523	Open in IMG/M
3300005764\|Ga0066903_100681244	All Organisms → cellular organisms → Bacteria → Acidobacteria	1807	Open in IMG/M
3300005764\|Ga0066903_101803741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1169	Open in IMG/M
3300005764\|Ga0066903_102334551	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300005764\|Ga0066903_104690758	Not Available	728	Open in IMG/M
3300005764\|Ga0066903_106703759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300005764\|Ga0066903_107593904	Not Available	559	Open in IMG/M
3300005764\|Ga0066903_107986401	Not Available	543	Open in IMG/M
3300005764\|Ga0066903_109136865	Not Available	501	Open in IMG/M
3300005840\|Ga0068870_10301884	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300005841\|Ga0068863_101733074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300006797\|Ga0066659_10903386	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300006845\|Ga0075421_100044526	All Organisms → cellular organisms → Bacteria	5620	Open in IMG/M
3300006845\|Ga0075421_100852708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1044	Open in IMG/M
3300006854\|Ga0075425_100068576	All Organisms → cellular organisms → Bacteria	3991	Open in IMG/M
3300006854\|Ga0075425_102262952	Not Available	605	Open in IMG/M
3300006854\|Ga0075425_102494066	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300006871\|Ga0075434_100360996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1474	Open in IMG/M
3300006954\|Ga0079219_10684324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300007004\|Ga0079218_10646554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	978	Open in IMG/M
3300007076\|Ga0075435_100781750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	831	Open in IMG/M
3300009012\|Ga0066710_101076603	All Organisms → cellular organisms → Bacteria → Acidobacteria	1243	Open in IMG/M
3300009012\|Ga0066710_101632404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	986	Open in IMG/M
3300009162\|Ga0075423_10408795	All Organisms → cellular organisms → Bacteria → Acidobacteria	1425	Open in IMG/M
3300009162\|Ga0075423_12432729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300009597\|Ga0105259_1042174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1003	Open in IMG/M
3300009814\|Ga0105082_1085995	Not Available	576	Open in IMG/M
3300010043\|Ga0126380_11798943	Not Available	554	Open in IMG/M
3300010046\|Ga0126384_10490048	Not Available	1057	Open in IMG/M
3300010047\|Ga0126382_11813665	Not Available	574	Open in IMG/M
3300010048\|Ga0126373_11356774	Not Available	777	Open in IMG/M
3300010301\|Ga0134070_10050149	All Organisms → cellular organisms → Bacteria → Acidobacteria	1407	Open in IMG/M
3300010304\|Ga0134088_10337291	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300010358\|Ga0126370_11260127	Not Available	691	Open in IMG/M
3300010360\|Ga0126372_10674150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1005	Open in IMG/M
3300010360\|Ga0126372_12541742	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300010361\|Ga0126378_11147595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	876	Open in IMG/M
3300010362\|Ga0126377_11367911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300010366\|Ga0126379_11678237	Not Available	740	Open in IMG/M
3300010366\|Ga0126379_12615963	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300010376\|Ga0126381_102296282	Not Available	775	Open in IMG/M
3300010398\|Ga0126383_12612690	Not Available	588	Open in IMG/M
3300010400\|Ga0134122_13005663	Not Available	526	Open in IMG/M
3300011403\|Ga0137313_1010135	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300011409\|Ga0137323_1013266	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300012206\|Ga0137380_10425356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300012401\|Ga0134055_1394508	Not Available	631	Open in IMG/M
3300012948\|Ga0126375_11082569	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300012948\|Ga0126375_11196841	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300012948\|Ga0126375_11310718	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300012971\|Ga0126369_11270822	Not Available	826	Open in IMG/M
3300012971\|Ga0126369_11367402	Not Available	798	Open in IMG/M
3300012971\|Ga0126369_13500966	Not Available	514	Open in IMG/M
3300012972\|Ga0134077_10583507	Not Available	504	Open in IMG/M
3300012976\|Ga0134076_10022728	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2232	Open in IMG/M
3300014150\|Ga0134081_10410513	Not Available	510	Open in IMG/M
3300015371\|Ga0132258_10127265	Not Available	6066	Open in IMG/M
3300015371\|Ga0132258_10329168	All Organisms → cellular organisms → Bacteria	3770	Open in IMG/M
3300015371\|Ga0132258_10644633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2663	Open in IMG/M
3300015371\|Ga0132258_10679868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2590	Open in IMG/M
3300015371\|Ga0132258_13743584	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300015374\|Ga0132255_102742987	Not Available	753	Open in IMG/M
3300015374\|Ga0132255_103836699	Not Available	639	Open in IMG/M
3300016341\|Ga0182035_10783084	Not Available	836	Open in IMG/M
3300017656\|Ga0134112_10084428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1182	Open in IMG/M
3300018431\|Ga0066655_10021913	All Organisms → cellular organisms → Bacteria	2988	Open in IMG/M
3300019249\|Ga0184648_1032718	Not Available	663	Open in IMG/M
3300021560\|Ga0126371_11137482	Not Available	919	Open in IMG/M
3300025908\|Ga0207643_10916871	Not Available	568	Open in IMG/M
3300025922\|Ga0207646_10010685	All Organisms → cellular organisms → Bacteria → Acidobacteria	8938	Open in IMG/M
3300025926\|Ga0207659_10398696	Not Available	1150	Open in IMG/M
3300025930\|Ga0207701_11480185	Not Available	551	Open in IMG/M
3300027874\|Ga0209465_10176197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300027909\|Ga0209382_10046326	All Organisms → cellular organisms → Bacteria	5193	Open in IMG/M
3300027909\|Ga0209382_10115856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3128	Open in IMG/M
3300031719\|Ga0306917_10708841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300031820\|Ga0307473_10394356	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300032076\|Ga0306924_10847907	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300032180\|Ga0307471_100996631	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1005	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.51%
Host-Associated	Host-Associated	25.49%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.59%
Plants	Host-Associated → Plants	25.49%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Sediment	Environmental → Aquatic → Sediment	2.94%
Freshwater	Environmental → Aquatic → Freshwater	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.04%
Loam	Environmental → Terrestrial → Soil → Loam	21.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.90%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.94%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_147929491	3300000550	Soil	TQSVERSETELVVVKGFEGEDIEVTIEQLETKILPQSTAGFLD*
soilL1_100286375	3300003267	Sugarcane Root And Bulk Soil	MNTPCNETPKAEVVVIKGFENEEIEVSIEQLESRIVPESTAGFLD*
soilL2_101712712	3300003319	Sugarcane Root And Bulk Soil	MSTPRNEPSKTETVVVKGFESEDIEVTVEQLETRTMPESTAGFLD*
soilH1_101142141	3300003321	Sugarcane Root And Bulk Soil	TERTNTMRKPYVESSKAEPIVIKGFEGEDIEITIEQLEDRIAPDQSTAGFLD*
Ga0062593_1032308521	3300004114	Soil	MNTPRNQPSKTETVVIKGFESEDIEVTVEQLETRTMPESTAGFLD*
Ga0063356_1005445162	3300004463	Arabidopsis Thaliana Rhizosphere	MSALIIEQTKNDTVVIKGFENEEITVSVEQLETRLVPESLAGFLD*
Ga0063356_1035707911	3300004463	Arabidopsis Thaliana Rhizosphere	MTRPCIEAINVEQVVIKGFEDDDLEITVEQLEMRIVPESTAGFLE*
Ga0066395_100260053	3300004633	Tropical Forest Soil	MKTQSVERSETELVVVKGFEGEEIEITIEQLETKILPQSTAGFLD*
Ga0066395_107286481	3300004633	Tropical Forest Soil	MNTPCTDQSKAELLVIKGFEGEDIEVSVEQLEMKIMPESLAGFLD*
Ga0066674_100092933	3300005166	Soil	MNTQDIEPSKTELVVIKGFEGEHIEVSVEQLEMRIMPESTAGFLD*
Ga0066388_1003580022	3300005332	Tropical Forest Soil	MNTPCIEPSDAELVVIKGFEGEDIEVTVEQLEVRIIPESLAGFLD*
Ga0066388_1012183831	3300005332	Tropical Forest Soil	MNTPCIEKTNAEDVVIKGFEGEDIEVSVEELEPRIVPQSSAGFLD*
Ga0066388_1014384661	3300005332	Tropical Forest Soil	MNTPCIEPSEAELVVIKGFEGEDIEVSVEELEVRIVPESLAGFLD*
Ga0066388_1023683622	3300005332	Tropical Forest Soil	MMKTQSVKPLETELVVIKGFEGEDIEVTVEQLETRILPQSTAGFLD*
Ga0070668_1012786391	3300005347	Switchgrass Rhizosphere	MSAPCIESAKAEVLVIKGFEGESIEIVEQLETRLVPESLAGFLD*
Ga0070675_1009753142	3300005354	Miscanthus Rhizosphere	MSALIIEQTKNDTVVIKGFENEEINVSVEQLETRLVPESLAGFLD*
Ga0070700_1010197142	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MNTPCIEPSERELVVIKGFADEDIEIKVEQLETRIMPSSLAGFLD*
Ga0070708_1000751582	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNTPCIEQSQAELIVIKGFEGEDIEVSVEQLETRLMPESTAGFLE*
Ga0066686_101769642	3300005446	Soil	MDTPYIELSKTELVVIKGFEGEDIELNVEQLELRIMPESTAGFLE*
Ga0066698_108918541	3300005558	Soil	MNKQDIEPSKTELVVIKGFEGEDIEVSVEQLETRIMPESTAGFLE*
Ga0066706_101456861	3300005598	Soil	KTELVVIKGFEGEHIEVSVEQLEMRIMPESTAGFLD*
Ga0066905_1000778491	3300005713	Tropical Forest Soil	MMKTQSVERSETELVVVKGFEGEEIEITIEQLETKILPQSTAGFLD*
Ga0066905_1003595662	3300005713	Tropical Forest Soil	MMKTQSVEPLETELVVIKGFEGEDIEVTVEQLETRILPQSTAGFLD*
Ga0066905_1021169721	3300005713	Tropical Forest Soil	MKTQSVEPLETELVVIKGFEGEDIEVTVEQLETRILPQ
Ga0066903_1006812442	3300005764	Tropical Forest Soil	MNTPCIEESKSKLAVIKGFEGEDIEVSVEQLEPRIMPESTAGFLD*
Ga0066903_1018037411	3300005764	Tropical Forest Soil	MKTQSVELSETELAVIKGFEGEDIEVTFEQLETRILPQSTAGFLD*
Ga0066903_1023345512	3300005764	Tropical Forest Soil	MMKTKSVERSETELVVVKGFEGEDIEVTIEQLETKILPQSTAGFLD*
Ga0066903_1046907582	3300005764	Tropical Forest Soil	MMKTQSVNPLETELVVIKGFEGEDIEVTVEQLETRILPQSTAGFLD*
Ga0066903_1067037591	3300005764	Tropical Forest Soil	MNRPSLELSEPELVVIKGFEGEDVDTSVEQLEMRIMPESLAGFLD*
Ga0066903_1075939042	3300005764	Tropical Forest Soil	MNTPCTEQAESELVVIKGFHGEDIEVSVEQLETRIMPESSAGFLD*
Ga0066903_1079864011	3300005764	Tropical Forest Soil	MNTPSIEKSKAEHIAIKGFEGEDIEISIEQLEPRITPESTAGFLD*
Ga0066903_1091368651	3300005764	Tropical Forest Soil	TKSMNTPCIEKTKAEDVVTKGFEGEDIEVNVEELEPRIVPQSTAGFLD*
Ga0068870_103018842	3300005840	Miscanthus Rhizosphere	MNTPCIEPSESELVVIKGFADEDIEIKVEQLETRIMPSSLAGFLD*
Ga0068863_1017330741	3300005841	Switchgrass Rhizosphere	KAPHVESTQPELVVIKGFKGEEIEVTIEQLEDRIAPDQSTAGFLD*
Ga0066659_109033862	3300006797	Soil	MNTPCIEQSQAELSVIKGFEGEDIEVSVEQLETRLMPESTAGFLE*
Ga0075421_1000445262	3300006845	Populus Rhizosphere	MMKTQSVERSVTELVVVKGFEGEDIEVTIEQLETKILPQSTAGFLD*
Ga0075421_1008527082	3300006845	Populus Rhizosphere	MMKTQSVERSETELVVVKGFEGEDIEITIEQLETKILPQSTAGFLD*
Ga0075425_1000685762	3300006854	Populus Rhizosphere	MNTPCAEQSKAELVVIKGFEGENIEVSVELLETRIMPESTAGFLE*
Ga0075425_1022629522	3300006854	Populus Rhizosphere	MKTKSVERSETERVVVKGFEGEDIEVTIEQLETKI
Ga0075425_1024940661	3300006854	Populus Rhizosphere	MNTPCIEPSEAELVVIKGFEGEDIEVSVEQLEVRIMPESLAGFLD*
Ga0075434_1003609961	3300006871	Populus Rhizosphere	MKTQCVERSVTELVVVKGFEGEDIEITIEQLETKI
Ga0079219_106843242	3300006954	Agricultural Soil	QRSDSMNTPCIEESKAEVVVFKGFEGEDIEVSFEQLEPRIVPQSTAGFLD*
Ga0079218_106465541	3300007004	Agricultural Soil	MKTCIDPPKTELVVVKGFESEDIEVSVEQLEMRIVPESTAGFLD*
Ga0075435_1007817502	3300007076	Populus Rhizosphere	MMKTQSVERSETELVVVKGFEGEDIEVTIEQLETKILPQSTAGFLD
Ga0066710_1010766032	3300009012	Grasslands Soil	ISKKGSTAMNTPCIEQSQAELSVIKGFEGEDIEVSVEQLETRLMPESTAGFLE
Ga0066710_1016324042	3300009012	Grasslands Soil	MDTPYIELSKTELVVIKGFEGEDIELNVEQLELRIMPESTAGFLE
Ga0075423_104087951	3300009162	Populus Rhizosphere	MNTPCIEPSEAELVVIKGFEGEDIEVSVEELEVRIVPESLAGFLD
Ga0075423_124327291	3300009162	Populus Rhizosphere	MNRPSLELSELELVVIKGFEGEDIDASVEQLEMRIMPESLAGF
Ga0105259_10421741	3300009597	Soil	RHEQQPTEGSTTMSTCIEPSKTELVVIKGFESEDIEVTVEQLEMRIVPESTAGFLD*
Ga0105082_10859951	3300009814	Groundwater Sand	MSTSSIDLSKAEVVAIKGFEGDDLEISVEQLETRIVPQSTAGFLD*
Ga0126380_117989432	3300010043	Tropical Forest Soil	MNTPCIKESKSELVVVKGFEGEDIEVSVEQLEPRIMPESSAGFLD*
Ga0126384_104900482	3300010046	Tropical Forest Soil	MNTSSIEQSKPELVVIKGFEGEDIEVSVEQLETRITPGATAGFLD*
Ga0126382_118136652	3300010047	Tropical Forest Soil	MNTPCIEPLEAELVVIKGFEGEDIEVGVEQLEVRTMPESLAGFLD*
Ga0126373_113567742	3300010048	Tropical Forest Soil	MNTPCIEQSESGLVVIKGFDGVDIEVSVEQLETRIVPESTAGFLD*
Ga0134070_100501491	3300010301	Grasslands Soil	SKTELVVIKGFEGEHIEVSVEQLEMRIMPESTAGFLD*
Ga0134088_103372912	3300010304	Grasslands Soil	MNTPCAEQSKAELVVIKGFEGENIEVSVELLETRIMSESTAGFLE*
Ga0126370_112601271	3300010358	Tropical Forest Soil	MNTPCIEKTKAEDVVTKGFEGEDIEVSVEELEPRIVPQSTAGFLD*
Ga0126372_106741501	3300010360	Tropical Forest Soil	MMKAKCVERSETELVVVKGFEGEEIEITIEQLETKILPQSTAGFLD*
Ga0126372_125417422	3300010360	Tropical Forest Soil	MNTPCIEPSNAELVVIKGFEGEDIEVTVEQLEVRIIPES
Ga0126378_111475951	3300010361	Tropical Forest Soil	MMKTQSVERSETELVVVKGFEGEDIEITIEQLETKILPQSTAGF
Ga0126377_113679112	3300010362	Tropical Forest Soil	MNTPCIEPSEAELVVIKGFEGEDIEVGVEQLEVRIMPESLAGF
Ga0126379_116782372	3300010366	Tropical Forest Soil	MKTRSVEPSETELVVIKGFEGEDIEVTVEQLETRILPQSTAGFLD*
Ga0126379_126159632	3300010366	Tropical Forest Soil	MSTPCIEKSKVEEVVFEGFEGENIEVTFETLEPRIVPQSTAGFLD*
Ga0126381_1022962821	3300010376	Tropical Forest Soil	TERTKMMKTKSVERSETELVVVKGFEGEDIEVTIEQLETKILPQSTAGFLD*
Ga0126383_126126901	3300010398	Tropical Forest Soil	MKPACIEPSKTDLVVIKGFENEVIEVTVEQLENRIMPDQSTAGFLE*
Ga0134122_130056631	3300010400	Terrestrial Soil	SNAVNTSSIELLESESVVIKGFENEIIDVGVEQLETRIVPESLAGFLE*
Ga0137313_10101352	3300011403	Soil	MSTCIEPSKTELVVIKGFESEDIEVTVEQLEMRIVPESTAGFLD*
Ga0137323_10132662	3300011409	Soil	MSICIEPSKTELVVIKGFENEDIEVTVEQLEMRIVPESTAGFLD*
Ga0137380_104253562	3300012206	Vadose Zone Soil	ANWPSAQFLLLRERTETMDTPYIELSKTELVVIKGFEGEDIELNVEQLELRIMPESTAGFLE*
Ga0134055_13945081	3300012401	Grasslands Soil	MNTQDIEPSKTELVVIKGFEGEHIEVSVEQLETRIMPESTAGFLE*
Ga0126375_110825691	3300012948	Tropical Forest Soil	MNTPCIEPSNAELVVIKGFEGEDIEVTVEQLEVRIIPESLAGFLD*
Ga0126375_111968411	3300012948	Tropical Forest Soil	MNTPCIEPLEAELVVIKGFEGEDIEVSVEQLEVRIMPESLAGFLD*
Ga0126375_113107182	3300012948	Tropical Forest Soil	MNTPCIEQTKAEVVVIKGFEGENIELSIEQLETRLMPESTAGFL
Ga0126369_112708221	3300012971	Tropical Forest Soil	NSSEERTNKMNESCIEESKSELVVIKGFDCEDIEVSVEQLESRIMPESTAGFLD*
Ga0126369_113674021	3300012971	Tropical Forest Soil	MKTQSVELSETELVVIKGFEAEDIEVTVEQLETRILPQSTAGFLD*
Ga0126369_135009662	3300012971	Tropical Forest Soil	MEQTKTELVVFKGFEGEDVEVTFEQLEPRIVPQSTAGFLE*
Ga0134077_105835072	3300012972	Grasslands Soil	MNKQDIEPSKTELVVIKGFEGEDIEVSVEQLEMRIMPESTAGF
Ga0134076_100227282	3300012976	Grasslands Soil	MNTQDIEPSKTELVVIKGFEGEDIEVSVEQLETRIMPESTAGFLE*
Ga0134081_104105132	3300014150	Grasslands Soil	RERTETMNTQDIEPSKTELVVIKGFEGEHIEVSVEQLEMRIMPESTAGFLD*
Ga0132258_101272654	3300015371	Arabidopsis Rhizosphere	MSTPFVEASKTELLVIRGFEGEEIEVAVEQLENRIVPQSSAGFLD*
Ga0132258_103291683	3300015371	Arabidopsis Rhizosphere	MNTPSIELLEKESIAIKGFENEVLEVSVEQLETRIVPESLAGFLE*
Ga0132258_106446333	3300015371	Arabidopsis Rhizosphere	MMKTKSVERSETERVVVKGFEGEDIEITIEQLETKILPQSTAGFLD*
Ga0132258_106798683	3300015371	Arabidopsis Rhizosphere	METPSIESSKTELVVVKGFDGEDIEITFEQLETRIVPQSSAGFLD*
Ga0132258_137435842	3300015371	Arabidopsis Rhizosphere	MSTPSIELSNAELVVTTGFEGEDLDVTVEQLEMRNMPESLAGFLD*
Ga0132255_1027429871	3300015374	Arabidopsis Rhizosphere	EKESIAIKGFENEVLEVSVEQLETRIVPESLAGFLE*
Ga0132255_1038366991	3300015374	Arabidopsis Rhizosphere	ERVVVKGFEGEDIEVTIEQLETKILPQSTAGFLD*
Ga0182035_107830842	3300016341	Soil	LPAALLIKRKDKTMNTPCTEQSKAELFVLKGFEGEDITVSVEELEPRIVPESTAGFLD
Ga0134112_100844281	3300017656	Grasslands Soil	MNKQDIEPSKTELVVIKGFEGEDIEVSVEQLETRIMPESTAGFLE
Ga0066655_100219133	3300018431	Grasslands Soil	MNTQDIEPSKTELVVIKGFEGEHIEVSVEQLEMRIMPESTAGFLD
Ga0184648_10327181	3300019249	Groundwater Sediment	RKEPTMSTPYSDSTKAGTIVIKGFESEDIEVTVEQLEARIVPESSAGFLD
Ga0126371_111374822	3300021560	Tropical Forest Soil	MNTPCIEESKSKLVVIKGFEGEDIEVSVEQLEPRIMPESSAGFLD
Ga0207643_109168712	3300025908	Miscanthus Rhizosphere	MNTPCIEPSESELVVIKGFADEDIEIKVEQLETRIMPSSLAGFLD
Ga0207646_100106855	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNTPCIEQSQAELIVIKGFEGEDIEVSVEQLETRLMPESTAGFLE
Ga0207659_103986962	3300025926	Miscanthus Rhizosphere	MSALIIEQTKNDTVVIKGFENEEINVSVEQLETRLVPESLAGFLD
Ga0207701_114801851	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MSALIIEQTKNDTVVIKGFENEEITVSVEQLETRIVPESLAGFLD
Ga0209465_101761972	3300027874	Tropical Forest Soil	MKTQSVERSETELVVVKGFEGEEIEITIEQLETKILPQSTAGFLD
Ga0209382_100463263	3300027909	Populus Rhizosphere	MMKTQSVERSVTELVVVKGFEGEDIEVTIEQLETKILPQSTAGFLD
Ga0209382_101158563	3300027909	Populus Rhizosphere	MMKTQSVERSETELVVVKGFEGEDIEITIEQLETKILPQSTAGFLD
Ga0306917_107088412	3300031719	Soil	MNTPCIEQSEAELVVIKGFEGEEIEVSVEQLETRIVPESTAGFLD
Ga0307473_103943562	3300031820	Hardwood Forest Soil	MNTPCIEQSQAELSVIKGFEGEDIEVSVEQLETRLMPESTAGFLE
Ga0306924_108479071	3300032076	Soil	MNTPCIEQSEAELVVIKGFEGEEIEVSVEQLETRIV
Ga0307471_1009966312	3300032180	Hardwood Forest Soil	MDTLYSEPSKTELVVIKGFEGEDIELSVEQLEMRIMPESTAGFLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100760

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences