NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F100649

Metagenome / Metatranscriptome Family F100649

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100649
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 115 residues
Representative Sequence VSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGSGMPARTSRQREVRRSRDRESALREGEDRAAHRVL
Number of Associated Samples 91
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 57.14 %
% of genes near scaffold ends (potentially truncated) 40.20 %
% of genes from short scaffolds (< 2000 bps) 83.33 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (52.941 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(14.706 % of family members)
Environment Ontology (ENVO) Unclassified
(22.549 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.059 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 52.98%    β-sheet: 0.00%    Coil/Unstructured: 47.02%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF04542Sigma70_r2 11.76
PF03706LPG_synthase_TM 8.82
PF02909TetR_C_1 5.88
PF00440TetR_N 2.94
PF03006HlyIII 1.96
PF08044DUF1707 0.98
PF03861ANTAR 0.98
PF00270DEAD 0.98
PF04545Sigma70_r4 0.98
PF13185GAF_2 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 11.76
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 11.76
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 11.76
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 11.76
COG0392Predicted membrane flippase AglD2/YbhN, UPF0104 familyCell wall/membrane/envelope biogenesis [M] 8.82
COG1309DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmATranscription [K] 5.88
COG1272Predicted membrane channel-forming protein YqfA, hemolysin III familyIntracellular trafficking, secretion, and vesicular transport [U] 1.96
COG3707Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domainsTranscription [K] 0.98

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms52.94 %
UnclassifiedrootN/A47.06 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459005|F1BAP7Q01B329LNot Available532Open in IMG/M
3300003368|JGI26340J50214_10008908All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3219Open in IMG/M
3300004080|Ga0062385_10387914All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia831Open in IMG/M
3300004101|Ga0058896_1433136Not Available555Open in IMG/M
3300004120|Ga0058901_1564744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Embleya → Embleya scabrispora646Open in IMG/M
3300004131|Ga0058898_1215444Not Available599Open in IMG/M
3300004139|Ga0058897_11196243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Embleya → Embleya scabrispora674Open in IMG/M
3300005329|Ga0070683_100270330All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1617Open in IMG/M
3300005338|Ga0068868_100369656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1232Open in IMG/M
3300005435|Ga0070714_101495753Not Available659Open in IMG/M
3300005436|Ga0070713_100436739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae1227Open in IMG/M
3300005436|Ga0070713_100672215Not Available987Open in IMG/M
3300005440|Ga0070705_100556555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales880Open in IMG/M
3300005445|Ga0070708_100159339All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2103Open in IMG/M
3300005467|Ga0070706_100033358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4751Open in IMG/M
3300005468|Ga0070707_101047106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia781Open in IMG/M
3300005536|Ga0070697_100001356All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia18526Open in IMG/M
3300005538|Ga0070731_10057433All Organisms → cellular organisms → Bacteria → Terrabacteria group2588Open in IMG/M
3300005564|Ga0070664_100258731All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1566Open in IMG/M
3300005591|Ga0070761_10223838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1120Open in IMG/M
3300006028|Ga0070717_10821670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria845Open in IMG/M
3300006086|Ga0075019_10906036Not Available566Open in IMG/M
3300006806|Ga0079220_10108270All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1456Open in IMG/M
3300006806|Ga0079220_10726109Not Available735Open in IMG/M
3300006854|Ga0075425_101137047Not Available888Open in IMG/M
3300006871|Ga0075434_100647851All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1075Open in IMG/M
3300006904|Ga0075424_102429297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Embleya → Embleya scabrispora550Open in IMG/M
3300006914|Ga0075436_100519173Not Available873Open in IMG/M
3300006954|Ga0079219_10057746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1708Open in IMG/M
3300007076|Ga0075435_100071832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2827Open in IMG/M
3300007255|Ga0099791_10637229Not Available522Open in IMG/M
3300009090|Ga0099827_10404403All Organisms → cellular organisms → Bacteria → Terrabacteria group1167Open in IMG/M
3300009101|Ga0105247_10527552Not Available865Open in IMG/M
3300009143|Ga0099792_10160163Not Available1248Open in IMG/M
3300009174|Ga0105241_12054287Not Available564Open in IMG/M
3300009520|Ga0116214_1305468Not Available611Open in IMG/M
3300009525|Ga0116220_10070832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1463Open in IMG/M
3300009672|Ga0116215_1221309Not Available831Open in IMG/M
3300009698|Ga0116216_10671157Not Available623Open in IMG/M
3300009764|Ga0116134_1023820All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales2474Open in IMG/M
3300009824|Ga0116219_10516469Not Available660Open in IMG/M
3300010154|Ga0127503_10528977Not Available654Open in IMG/M
3300010379|Ga0136449_100387196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2490Open in IMG/M
3300010379|Ga0136449_101395197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1082Open in IMG/M
3300010379|Ga0136449_101535985Not Available1016Open in IMG/M
3300010379|Ga0136449_101987935Not Available859Open in IMG/M
3300010880|Ga0126350_12360213Not Available903Open in IMG/M
3300011120|Ga0150983_14195206Not Available1116Open in IMG/M
3300012199|Ga0137383_10030833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3763Open in IMG/M
3300012204|Ga0137374_11218080Not Available526Open in IMG/M
3300012206|Ga0137380_10287700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1474Open in IMG/M
3300012207|Ga0137381_10197800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1741Open in IMG/M
3300012207|Ga0137381_10687246Not Available890Open in IMG/M
3300012209|Ga0137379_10018531All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6680Open in IMG/M
3300012211|Ga0137377_10187105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1988Open in IMG/M
3300012349|Ga0137387_10908800Not Available636Open in IMG/M
3300012683|Ga0137398_10127383All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1633Open in IMG/M
3300014200|Ga0181526_10402757Not Available868Open in IMG/M
3300018047|Ga0187859_10651758Not Available596Open in IMG/M
3300019190|Ga0184600_136613Not Available532Open in IMG/M
3300020002|Ga0193730_1069436Not Available1004Open in IMG/M
3300020580|Ga0210403_10183141All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1717Open in IMG/M
3300020583|Ga0210401_10851360All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Demequinaceae → Demequina → Demequina lutea771Open in IMG/M
3300021178|Ga0210408_11039026All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Demequinaceae → Demequina → Demequina lutea632Open in IMG/M
3300021402|Ga0210385_11211258All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia579Open in IMG/M
3300021475|Ga0210392_10135209All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1667Open in IMG/M
3300021478|Ga0210402_11062283Not Available737Open in IMG/M
3300021559|Ga0210409_10829086Not Available798Open in IMG/M
3300025910|Ga0207684_10006820All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria10355Open in IMG/M
3300025915|Ga0207693_11033845Not Available626Open in IMG/M
3300025915|Ga0207693_11306672Not Available542Open in IMG/M
3300025920|Ga0207649_11005724Not Available656Open in IMG/M
3300025922|Ga0207646_10476586All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1125Open in IMG/M
3300025928|Ga0207700_10142151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1973Open in IMG/M
3300025944|Ga0207661_10186273All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1817Open in IMG/M
3300026374|Ga0257146_1014387All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1291Open in IMG/M
3300026498|Ga0257156_1015078All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1505Open in IMG/M
3300026557|Ga0179587_10140978Not Available1496Open in IMG/M
3300027698|Ga0209446_1028335All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1402Open in IMG/M
3300027765|Ga0209073_10031577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1644Open in IMG/M
3300027775|Ga0209177_10029116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1436Open in IMG/M
3300027812|Ga0209656_10000245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria36438Open in IMG/M
3300027853|Ga0209274_10425905Not Available686Open in IMG/M
3300027869|Ga0209579_10099633All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1540Open in IMG/M
3300027882|Ga0209590_10543123Not Available749Open in IMG/M
3300027903|Ga0209488_10139702All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1828Open in IMG/M
3300030730|Ga0307482_1020460All Organisms → cellular organisms → Bacteria1368Open in IMG/M
3300030969|Ga0075394_11774653Not Available517Open in IMG/M
3300031446|Ga0170820_12782331Not Available544Open in IMG/M
3300031469|Ga0170819_11178528Not Available771Open in IMG/M
3300031474|Ga0170818_113559242Not Available774Open in IMG/M
3300031708|Ga0310686_104502422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1895Open in IMG/M
3300031715|Ga0307476_10227721All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1358Open in IMG/M
3300031754|Ga0307475_10212824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1546Open in IMG/M
3300032160|Ga0311301_10130813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4664Open in IMG/M
3300032160|Ga0311301_11301769Not Available918Open in IMG/M
3300032160|Ga0311301_12444247Not Available587Open in IMG/M
3300032515|Ga0348332_13341496Not Available756Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil14.71%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere12.75%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil11.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.78%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.86%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.90%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.90%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.94%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.94%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.96%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.96%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.98%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.98%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.98%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.98%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.98%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.98%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.98%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.98%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459005Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
3300003368Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004101Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004120Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004131Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF232 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004139Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300019190Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030969Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E41_042347302170459005Grass SoilPVSNRGLVVPVDGRRMVSTGAGITLVVAGMILRFAVPATFAYGLNTHVVSVIVTLGGVFGLLLSLLVWGPLDRRRNHYGGFGRGAPPPVSGIPVRTSQREVRRSRDPESALRESEHRAAHRVS
JGI26340J50214_1000890833300003368Bog Forest SoilVNRPSLVQPVGCRRVMSTGVGITLVVTGAILRFAVPATFIHGLNVHVVGVIVMLAGVFGLLLSLLVWGPLNRRHNHSGGYGREAPPFARSGVSTRTSRQREANRRRDRESAL*
Ga0062385_1038791423300004080Bog Forest SoilVNRPSLVQPVGCRRVMSTGVGIILVVTGAILRFAVPATLIHGLNVHVVAVIVMLAGVFGLLLSLLVWGPLNRRHNHSGGYGREAPPFARSGVSTRTSRQREANRRRDRESAL*
Ga0058896_143313613300004101Forest SoilVSNRGLVVPVDRRRMISTSVGVTLVMAGSILRFAVPPTFTYRLNAHLVSVIVILAGVFGLLLSLLVWGPLDRRRHHYGGFGRGAPPPGNGMPARTSRRREVRR
Ga0058901_156474413300004120Forest SoilVSNRGLVVPVDRRRMISTAVGITLIAVGAILRFAVPATFTYGLNAHVVSVIVMLAGIVGLLLSLLVWGPLDRRNHCSGFGRRVPPPGNGMPARTSGQRWTRGSRDRESVLR
Ga0058898_121544423300004131Forest SoilVSNRGLVVPVDRRRMISTSVGVTLVMAGSILRFAVPPTFTYGLNAHLVSVIVILAGVFGLLLSLLVWGPLDRRRHHYGGFGRGAPPPGNGMPARTSRRREVRRIRDRESALRESE
Ga0058897_1004695913300004139Forest SoilVSNRGLVVPVDGRRMISTGVGITLVVAGMILRFAVPATFAYGLNTHVVSVIVTLVGVFGLLLSLLVWGPLDRRRNRSRDPESALRESEHTAAHRVS*
Ga0058897_1119624313300004139Forest SoilVSNRGLVVPVGGRRMISTGVGIILVVAGMIVRFAVPATFTYGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNHYGGFGLGAPSPGNGIPARTSQCEIRRSRDRESALRESEHRAAHRVL*
Ga0070683_10027033013300005329Corn RhizosphereQHRAPVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFTYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL*
Ga0068868_10036965613300005338Miscanthus RhizosphereQRGEPAVLPSGYQPDHYGRPQHRAPVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL*
Ga0070714_10149575313300005435Agricultural SoilGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL*
Ga0070713_10043673913300005436Corn, Switchgrass And Miscanthus RhizosphereVSNRGLVVPVDRRRMISTAVGITLIAVGAILRFAVPATFTYGLNAHVVSVIVMLAGIFGLLLSLLVWGPLDRRRNHHGGFGRRVPPPGNGMPARTSRQRWARGSRDRESVPREAEHRAAHRVLSRH
Ga0070713_10067221523300005436Corn, Switchgrass And Miscanthus RhizosphereVSNRGLVVPVDGRRMISTAVGVTLIVAGAILRFAVPATFAYGLSAHVISVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQRPGEAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL*
Ga0070705_10055655523300005440Corn, Switchgrass And Miscanthus RhizosphereVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMPARTSRQREVRRSRDRESALREGEDRTAHRVL*
Ga0070708_10015933913300005445Corn, Switchgrass And Miscanthus RhizosphereVLSSGHQPGRYGRPRDRAPVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLDRRRNHYGGFGRAAAPPGNGMLARTSRQREVRQSRDRESALREGGDRAAHRVL*
Ga0070706_10003335853300005467Corn, Switchgrass And Miscanthus RhizosphereVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLDRRRNHYGGFGRAAAPPGNGMLARTSRQREVRQSRDRESALREGGDRAAHRVL*
Ga0070707_10104710613300005468Corn, Switchgrass And Miscanthus RhizosphereDRAPVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMPARTSRQREVRRSRDRESALREGEDRTAHRVL*
Ga0070697_100001356233300005536Corn, Switchgrass And Miscanthus RhizosphereMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLDRRRNHYGGFGRAAAPPGNGMLARTSRQREVRQSRDRESALREGGDRAAHRVL*
Ga0070731_1005743323300005538Surface SoilVNRPGLVQLADYRQVMSTGVGITLVAAGAILRFAVPATFIHGLNVHVISVIVMLVGVFGLLLSLLVWGPLGRRRNHSGGYGRGRLRSPGSGASTRTSRQHEARRRRDREYAP*
Ga0070664_10025873123300005564Corn RhizosphereMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL*
Ga0070761_1022383813300005591SoilVNRPGLVQLADYRQVMSTGVGITLVAAGAILRFAVPATFIHGLNGHVISVIVMLAGVFGLLLSLLVWGPLSRRRNHSGGYGRGRRSPGSGASTRTSRQHEAFRRRDRGYAP*
Ga0070717_1082167013300006028Corn, Switchgrass And Miscanthus RhizosphereGRPRDCAPVSNRGLVVPVDGRRMISTGVGITLVVAGMILRFAVPATFAYGLNTHVVSVIVTLVGVFGLLLSLLVWGPLDRRRNRSRDPESALRESEHRAAHRVS*
Ga0075019_1090603613300006086WatershedsVNRPGLVQPVGCRRVMSTGVGITLVVAGAILRFAVPATFIRSLNVHVVGIIVMLAGVFGLLLSLLVWGPLNRRRNHSGGYGRGAPPSARSGVSTRTSRQREASRRRDRESVPQESERTGRWARRSS*
Ga0079220_1010827013300006806Agricultural SoilHRAPVSNRGLVVPVDGRRMISTAVGVTLIVAGAILRFAVPATFAYGLSAHIISVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL*
Ga0079220_1072610923300006806Agricultural SoilVSNRALVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFTYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAPPPGNGMPTRTSRQRGARRTARGSSKP*
Ga0075425_10113704723300006854Populus RhizosphereMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFDRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL*
Ga0075434_10064785113300006871Populus RhizosphereRAPVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL*
Ga0075424_10242929713300006904Populus RhizosphereMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVISVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL*
Ga0075436_10051917323300006914Populus RhizosphereVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFDRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL*
Ga0079219_1005774633300006954Agricultural SoilMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL*
Ga0075435_10007183253300007076Populus RhizosphereMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFDRGAQLPGKAKPMRTSRQRGARRNRDHESALRESEHRAAHRVL*
Ga0099791_1063722913300007255Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMPARTSRQREVHRSRDRESALREGEDRAAHRVL*
Ga0099827_1040440323300009090Vadose Zone SoilVNGRSLVLPVDGRRMISTGVGITLVAAGAILRFAVPAMFTHGLNVHVAGVIVILAGVFGLLLSLLVWGPLDRRRNHPGGYGRGAPPPSGSAVSTMTSRPREASPSVSGDRPGAL*
Ga0105247_1052755223300009101Switchgrass RhizosphereVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL*
Ga0099792_1016016323300009143Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGSGMPARTSRQREVRRSRDRESALREGEDRAAHRVL*
Ga0105241_1205428713300009174Corn RhizosphereQHRAPVSNRGLVVPVDGRRMISTAVGVTLIVAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL*
Ga0116214_130546813300009520Peatlands SoilMSTGVGITLVVAGAILRFAVPATFIHGLNVHVAGVIVMLAGVFGLLLSLLVWGPLNRRRNHSGGYGRGAPPFARSGVSTRTSRQREANRRRDRESAPQESESTGG*
Ga0116220_1007083223300009525Peatlands SoilVNRPGLVQLADYRQVMSTGVGITLVAAGAILRFAVSATFIHGLNVHVISVIVMLVGVFALLLSLLVWGPLSRRRNHSGGYGRGRRRSPGSGASTRTSRQHEAFRRRDREYAP*
Ga0116215_122130913300009672Peatlands SoilAILRLAVPATFIHGLNVHVVGVIVMLAGVFGLLSLLVWGPLNRRHNHSGGGYGRGAPPFARQRSIYQDQPPARGSRRRDRESALQERERSGR*
Ga0116216_1067115723300009698Peatlands SoilVGCRRVMSTGVGITLVVAGAILRFAVPATFIHGLNVHVAGVIVMLAGVFGLLLSLLVWGPLNRRRNHSGGYGRGAPPSARSGVSTPTSRQREANRRRDRESALQESEHTGS*
Ga0116134_102382043300009764PeatlandMSTGVGITLVVAGAILRFAVPATFIRDPNVHVAGVIVMLAGVFGLLLSLLVWGPLNRHRNHSGGYGRGAPPFARSGVSARTSRRREASRRRDRESAPQESERTGS*
Ga0116219_1051646923300009824Peatlands SoilAGAILRLAVPATFIHGLNVHVVGVIVMLAGVFGLLSLLVWGPLNRRHNHSGGGYGRGAPPFARQRSIYQDQPPARGSRRRDRESALQERERSGR*
Ga0127503_1052897713300010154SoilVSNRGLVVPVDGRRMISTGVGIALVVAGAILRFAVPATFAYGLNTHVVSVIVTLGGVFGLLLSLLVWGPLDRRRNHHGGFVRGAPLPGNGIPARTSQREIRRSRHRESALRE
Ga0136449_10038719623300010379Peatlands SoilMSTGVGITLVVAGAILRFAVPATFIHGLNVHVGGVIVMLAGVFGLLVSLLVWGPLNRRHNHSGGYGRGAPPFARSGVSTRTSRQREANRRRDRESAPQESESTGG*
Ga0136449_10139519723300010379Peatlands SoilVNRPGLVQLADYRQVMSTGVGITLVAAGAILRFAVPATFIHGLNVHVISVIVMLVGVFALLLSLLVWGPLSRRRNHSGGYGRGRRRSPGSGASTRTSRQHEAFRRRDREYAP*
Ga0136449_10153598523300010379Peatlands SoilMSTGVGITLVVAGAILRFAVPATFIHGLNVHVAGVIVMLAGVFGLLLSLLVWGPLNRRRNHSGGYGRGAPPSARSGVSTPTSRQREANRRRDRESALQESEHTGS*
Ga0136449_10198793533300010379Peatlands SoilGVGITLVVAGAILRLAVPATFIHGLNVHVVGVIVMLAGVFGLLSLLVWGPLNRRHNHSGGGYGRGAPPFARQRSIYQDQPPARGSRRRDRESALQERERSGR*
Ga0126350_1236021323300010880Boreal Forest SoilVSNRGLVVPADGRRMISTVVGIILVATGVILRFAVPATFTHGLTTHVASVIVMLAGILGLLLSLLVWGPLGRRRNRDGGSGRGVPPPGSGIATRTGRPRRARRSRDRESALRESGHRAAS
Ga0150983_1419520613300011120Forest SoilVSNRGLVVPVDSRPMISTAVGVILVAAGAIVRFAIPATFAQGLHTHLAGVIVMLAGILGLMLSLLVWGPLSRRRKDDGGSGGAIPPPGSGLPARTGRHRRVHRSRDRESALAEGGHRAAHRVS*
Ga0150983_1438504113300011120Forest SoilVRHGRPRDCAPVSNRGLVVPVDGRRMISTGVGITLVVAGMILRFAVPATFAYGLNTHVVSVIVTLVGVFGLLLSLLVWGPLDRRRNRSRDPESALRESEHRAAHRVS*
Ga0137383_1003083333300012199Vadose Zone SoilMISTGFGITLVLAGAILRFAVPVTLTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLDRRRNHDGGFGRGAPPPGNGMPARTSRQREVRRSRDRESVLREGEDRAAHRVL*
Ga0137374_1121808013300012204Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAIVRFAVPATFTYALNAHVVSVIVMLAGVFGCGVPLPGNGMVARTSRQRDVRRSR
Ga0137380_1028770013300012206Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAIVRFAVPATFNYALNAHVVSVIVMLAGVFGCGVPLPGNGMVARTSRQRDVRRSRDRESALRESEHRAAHRVL*
Ga0137381_1019780013300012207Vadose Zone SoilPVVLPSGHQPGRHGRPQDRAPVSNRGLVVPVDGRRMISTGVGITLVVAGAIVRFAVPATFTYALNAHVVSVIVMLAGVFGCGVPLPGNGMVARTSRQRDVRRSRDRESALRESEHRAAHRVL*
Ga0137381_1068724613300012207Vadose Zone SoilPVVLPSGHQPGRHGRPQDRAPVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATLTYGLNSRVVSVIVMLAGVFGLLLSLLVRGPLARRRNHDGGFGRGAPPPGNGMPARTSRQREVRRSRDRESVLREGEDRAAHRVL*
Ga0137379_1001853173300012209Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAIVRFAVPATFTYALNAHVVSVIVMLAGVFGCGVPLPGNGMVARTSRQRDVRRSRDRESALRESEHRAAHRVL*
Ga0137377_1018710513300012211Vadose Zone SoilGAILRFAVPVTLTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLDRRRNHDGGFGRGAPPPGNGMPARTSRQREVRRSRDRESVLREGEDRAAHRVL*
Ga0137387_1090880023300012349Vadose Zone SoilITLVAVGAILRFAVADGLNMHVAGVIVMLAGVFGLLLSLLVWGPLDRRRNHDGGFGRGAPPPGNGMPARTSRQREVRRSRDRESVLREGEDRAAHRVL*
Ga0137398_1012738343300012683Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMLARTSRQRKVRRSRDRESALREGEDRAAHRVL*
Ga0181526_1040275713300014200BogMSTGVGITLVVAGAILRFAVPATFIRDPNVHVAGVIVMLAGVFGLLLSLLVWGPLNRRHNHPGGYGRGAPPFARSGVSARTSRRREASRRRDRESAPQESERTGS*
Ga0187859_1065175823300018047PeatlandVMSTGVGITLVVAGAILRFAVPATFIRDPNVHVAGVIVMLAGVFGLLLSLLVWGPLNRHRNHSGGYGRGAPPFARSGVSARTSRRREASRRRDRESAPQESERTGS
Ga0184600_13661323300019190SoilLVNRPGLVQLADYRQVMSTSVGITLVAAGAILRFAVPATFIHGLNVHVISVIVMLVGVFGLLLSLLVWGPLNRRHDHSGGYGRGAPPFARSGVSTRTSRQRQANRRRDRESAL
Ga0193730_106943613300020002SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHHGGFGRGAPPLGNGMPARTSRQREVRRSRDRESALREGEDRAAHRVL
Ga0210403_1018314123300020580SoilVSNRGLVVPVGGRRMISTGVGIILVVAGMIVRFAVPATFTYGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNHYGGFGRGAPLPGNGIPARTSQCEIRRSRDRESALRESEHRAAHRVL
Ga0210401_1085136013300020583SoilRTGYPHVNSSLTEESVSVNRPGLVQPVGCGQVMSTGAGIALVAAGAIVRFAVPATFIHGLNPRVVGVIVMLAGVIALLLSLLVWGPLNRRRNHSGGYGSGPPPLARQRSVHRTSRQREGRLRGDRESAL
Ga0210408_1103902613300021178SoilVNRPGLVQPVGCGQVMSTGVGIALVAAGAIVRFAVPATFIHGLNPRVVGVIVMLAGVIALLLSLLVWGPLNRRRNHSGGYGSGPLPLARRERSTRISRPRDGRLRRDRESAL
Ga0210393_1059341723300021401SoilGRPRDCAPVSNRGLVVPVDGRRMISTGVGITLVVAGMILRFAVPATFAYGLNTHVVSVIVTLVGVFGLLLSLLVWGPLDRRRNRSRDPESALRESEHRAAHRVS
Ga0210385_1121125813300021402SoilPVGCRRVMSTGVGVTLVTTGAILRFAVPATFIHGLNVHVVGVIVMLAGVFGLLLSLLVWGPLSRRRNHSGGYGRGRRSPGSGASTRTSRPHEAFRRRDRGYAP
Ga0210392_1013520923300021475SoilVSNRGLVVPVGGRRMISTGVGIILVVAGMIVRFAVPATFTYGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNHYGGFGLGAPSPGNGIPARTSQCEIRRSRDRESALRESEHRAAHRVL
Ga0210402_1106228313300021478SoilVSNRGLVVPVDRRRMISTAVGITLIAVGAILRFAVPATFTYGLNAHVVSVIVMLAGIVGLLLSLLVWGPLDRRNHCSGFGRRVPPPGNGMPARTSGQRWTRGSRDRESVLRESEHRTAHRVLSRHVADGLRPVPARLPSSG
Ga0210409_1082908613300021559SoilQDCAPVSNRGLVVPVGGRRMISTGVGIILVVAGMIVRFAVPATFTYGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNHYGGFGLGAPSPGNGIPARTSQCEIRRSRDRESALRESEHRAAHRVL
Ga0207684_1000682043300025910Corn, Switchgrass And Miscanthus RhizosphereMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLDRRRNHYGGFGRAAAPPGNGMLARTSRQREVRQSRDRESALREGGDRAAHRVL
Ga0207693_1103384523300025915Corn, Switchgrass And Miscanthus RhizosphereGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL
Ga0207693_1130667213300025915Corn, Switchgrass And Miscanthus RhizosphereHGRPRDCAPVSNRGLVVPVDGRRMISTGVGITLVVAGMILRFAVPATFAYGLNTHVVSVIVTLVGVFGLLLSLLVWGPLDRRRNRSRDPESALRESEHRAAHRV
Ga0207649_1100572413300025920Corn RhizosphereRMISTAVGVTLIAAGAILRFAVPATFTYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL
Ga0207646_1047658623300025922Corn, Switchgrass And Miscanthus RhizosphereVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMPARTSRQREVRRSRDRESALREGEDRTAHRVL
Ga0207700_1014215133300025928Corn, Switchgrass And Miscanthus RhizosphereVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL
Ga0207661_1018627323300025944Corn RhizosphereLRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL
Ga0207676_1118908113300026095Switchgrass RhizospherePETARLQHQRGEPAVLPSGYQPDHYGRPQHRAPVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRSRDHESALRESEHRAAHRVL
Ga0257146_101438713300026374SoilVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMLARTSRQREVRRSRDRESALREGEDRAAHRVL
Ga0257156_101507823300026498SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMLARTSRQREVRRSRDRESALREGEDRAAHRVL
Ga0179587_1014097813300026557Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMPARTSRQREVHRSRDRESALREGEDRAAHRVL
Ga0209446_102833513300027698Bog Forest SoilVNRPSLVQPVGCRRVMSTGVGIILVVTGAILRFAVPATLIHGLNVHVVAVIVMLAGVFGLLLSLLVWGPLNRRHNHSGGYGREAPPFARSGVSTRTSRQREANRRRDRESAL
Ga0209073_1003157723300027765Agricultural SoilVSNRALVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL
Ga0209177_1002911623300027775Agricultural SoilDHYGRPQHRAPVSNRGLVVPVDGRRMISTAVGVTLIAAGAILRFAVPATFAYGLSAHVMSVIVMLAGIFGLLLSLLVWGPLDRRRNHYGGFGRGAQLPGKAKPTRTSRQRGARRNRDHESALRESEHRAAHHVL
Ga0209656_1000024583300027812Bog Forest SoilVNRPSLVQPVGCRRVMSTGVGITLVVTGAILRFAVPATFIHGLNVHVVGVIVMLAGVFGLLLSLLVWGPLNRRHNHSGGYGREAPPFARSGVSTRTSRQREANRRRDRESAL
Ga0209274_1042590513300027853SoilVNRPGLVQLADYRQVMSTGVGITLVAAGAILRFAVPATFIHGLNGHVISVIVMLAGVFGLLLSLLVWGPLSRRRNHSGGYGRGRRSPGSGASTRTSRQHEAFRRRDRGYAP
Ga0209579_1009963313300027869Surface SoilVNRPGLVQLADYRQVMSTGVGITLVAAGAILRFAVPATFIHGLNVHVISVIVMLVGVFGLLLSLLVWGPLGRRRNHSGGYGRGRLRSPGSGASTRTSRQHEARRRRDREYAP
Ga0209590_1054312313300027882Vadose Zone SoilVNGRSLVLPVDGRRMISTGVGITLVAAGAILRFAVPAMFTHGLNVHVAGVIVILAGVFGLLLSLLVWGPLDRRRNHPGGYGRGAPPPSGSAVSTMTSRPREASPSVSGDRPGAL
Ga0209488_1013970223300027903Vadose Zone SoilVSNRGLVVPVDGRRMISTGVGITLVVAGAILRFAVPATFTYGLNAHVVSVIVMLAGVFGLLLSLLVWGPLARRRNHQGGFGRGASPPGNGMLARTSRQRKVRRSRDRESALREGEDRAAHRVL
Ga0307482_102046023300030730Hardwood Forest SoilVNRPGLVQPVGCGQVMSTGVGIALVAAGAIVRFAVPATFIRGLDPRVVGVIVMLAGVIALLLSLLVWGPLNRRRSHSGGYGSGRGRSPGSGVFTRTSRQREGRLRRDRESAL
Ga0075394_1177465313300030969SoilVSNRGLVVPVDGRRMVSTGVGITLVVAGMILRFAVPATFTSGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNHYGGFGRGAPPPVSGIPVRTSQREVRRSRDPESA
Ga0170820_1278233113300031446Forest SoilVSNRGLVVPVGGRRMISTGVGVILVVAGMIVRFAVPATFAYGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNHYGGFGRGAPPPVSGIPVRTSQREVRRSRDPESALRESEHRAAHR
Ga0170819_1117852813300031469Forest SoilVSNRGLVVPVGGRRMISTGVGIVLVVAGMILRFAVPATFTYGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNLCGGFGRGAPPPGNGIPARTSQGEIRRSRDRESALRESEHRAAHRVLWR
Ga0170818_11355924223300031474Forest SoilVSNRGLVVPVGGRRMISTGVGIVLVVAGMILRFAVPATFTYGLNAHVVSVIVTLAGVFGLLLSLLVWGPLDRRRNHYGGFGRGAPPPVSGIPVRTSQREVRRSRDPESALRESEHRAAHRVS
Ga0310686_10450242223300031708SoilVNRPGLVQLADYRQVMSTSVGITLVAAGAILRFAVPATFIHGLNVHVISVIVMLVGVFGLLLSLVWGPLSRRRNRSGGYGRGRRSPGSGASTRTSRPHEAFRRRDRGYAP
Ga0307476_1022772123300031715Hardwood Forest SoilFLCYLSRRTGYPHVNSSLTEESVSVNRPGLVQPVGCGQVMSTGVGIALVAAGAIVRFAVPATFIRGLDPRVVGVIVMLAGVIALLLSLLVWGPLNRRRSHSGGYGSGRGRSPGSGVFTRTSRQREGRLRRDRESAL
Ga0307475_1021282433300031754Hardwood Forest SoilVNRPGLVQPVGCGQVMSTGVGIALVAAGAIVRFAVPATFIRGLDPRVVGVIVMLAGVIALLLSLLVWGPLNRRRSHSGAYGSGRGRSPGSGVFTRTSRQREGRLRRDRESAL
Ga0311301_1013081333300032160Peatlands SoilVNRPSLVQPVGCRQVMSTGVGITLVVAGAILRFAVPATFIHGLNVHVGGVIVMLAGVFGLLVSLLVWGPLNRRHNHSGGYGRGAPPFARSGVSTRTSRQREANRRRDRESAPQESESTGG
Ga0311301_1130176913300032160Peatlands SoilMSTGVGITLVVAGAILRFAVPATFIHGLNVHVAGVIVMLAGVFGLLLSLLVWGPLNRRRNHSGGYGRGAPPSARSGVSTPTSRQREANRRRDRESALQESEHTGS
Ga0311301_1244424713300032160Peatlands SoilVNRPGLVQPVGCRRVMSTGVGITLVVAGAILRFAVPATVIRGLNVHVAGIIVMLAGVFGLLLSLLVWGPLNRRENHPGGYGRGAPPFARSGVSARTSRRREASRRRDRESAPQESERTGS
Ga0348332_1334149613300032515Plant LitterLVQPVGCRRVMSTGVGITLVVAGAILRFAVSATFIHGLNVHVVGVVVMLAGVFGLLLSLLVWGPLNRRHDHSGGYGRGAPPFARSGVSTRTSRQRQANRRRDRESAL

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.