Metagenome / Metatranscriptome Family F100632

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100632
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	75 residues
Representative Sequence	MAERKSISTMHVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.57 %
% of genes near scaffold ends (potentially truncated)	28.43 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.863 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.549 % of family members)
Environment Ontology (ENVO)	Unclassified (39.216 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.098 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.19% β-sheet: 21.90% Coil/Unstructured: 61.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00266	Aminotran_5	29.41
PF09585	Lin0512_fam	9.80
PF03942	DTW	6.86
PF00293	NUDIX	1.96
PF02826	2-Hacid_dh_C	1.96
PF03471	CorC_HlyC	1.96
PF01557	FAA_hydrolase	0.98
PF05168	HEPN	0.98
PF01266	DAO	0.98
PF13432	TPR_16	0.98
PF00296	Bac_luciferase	0.98
PF01078	Mg_chelatase	0.98
PF01042	Ribonuc_L-PSP	0.98
PF00561	Abhydrolase_1	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3148	tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain	Translation, ribosomal structure and biogenesis [J]	6.86
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.98
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.98
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.98
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.86 %
Unclassified	root	N/A	40.20 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	17.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	2.94 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	2.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.96 %
Abditibacteriota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota	0.98 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.98 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	2.94 %
Abditibacteriia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → Abditibacteriia	0.98 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.98 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	2.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Abditibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → Abditibacteriia → Abditibacteriales	0.98 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.98 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Chlorellales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales	2.94 %
Abitibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → Abditibacteriia → Abditibacteriales → Abitibacteriaceae	0.98 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Chlorellaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae	2.94 %
Abditibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → Abditibacteriia → Abditibacteriales → Abitibacteriaceae → Abditibacterium	0.98 %
Nitrosomonas stercoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas stercoris	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Chlorella clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade	2.94 %
Abditibacterium utsteinense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → Abditibacteriia → Abditibacteriales → Abitibacteriaceae → Abditibacterium → Abditibacterium utsteinense	0.98 %
Nitrosomonas stercoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas stercoris	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Chlorella	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella	2.94 %
Abditibacterium utsteinense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → Abditibacteriia → Abditibacteriales → Abitibacteriaceae → Abditibacterium → Abditibacterium utsteinense	0.98 %
Nitrosomonas stercoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas stercoris	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0603714	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100800637	All Organisms → cellular organisms → Bacteria → Terrabacteria group	970	Open in IMG/M
3300000550\|F24TB_10879693	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1424	Open in IMG/M
3300000559\|F14TC_101414777	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300000787\|JGI11643J11755_11527001	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300004463\|Ga0063356_100051359	All Organisms → cellular organisms → Bacteria	4157	Open in IMG/M
3300004463\|Ga0063356_102674683	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300004798\|Ga0058859_10513121	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella	638	Open in IMG/M
3300005289\|Ga0065704_10212798	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1053	Open in IMG/M
3300005294\|Ga0065705_10031967	All Organisms → cellular organisms → Bacteria	1993	Open in IMG/M
3300005294\|Ga0065705_10290785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1078	Open in IMG/M
3300005295\|Ga0065707_10514045	All Organisms → cellular organisms → Bacteria → Terrabacteria group	747	Open in IMG/M
3300005332\|Ga0066388_100501699	All Organisms → cellular organisms → Bacteria	1849	Open in IMG/M
3300005332\|Ga0066388_103257070	Not Available	830	Open in IMG/M
3300005332\|Ga0066388_106892310	All Organisms → cellular organisms → Bacteria → Terrabacteria group	572	Open in IMG/M
3300005467\|Ga0070706_101350090	Not Available	653	Open in IMG/M
3300005562\|Ga0058697_10424805	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005764\|Ga0066903_103240040	All Organisms → cellular organisms → Bacteria → Proteobacteria	880	Open in IMG/M
3300005844\|Ga0068862_101057351	Not Available	805	Open in IMG/M
3300006844\|Ga0075428_100008683	All Organisms → cellular organisms → Bacteria → Proteobacteria	11272	Open in IMG/M
3300006853\|Ga0075420_100282940	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300007255\|Ga0099791_10108306	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1282	Open in IMG/M
3300007258\|Ga0099793_10014972	Not Available	3090	Open in IMG/M
3300007265\|Ga0099794_10769156	Not Available	515	Open in IMG/M
3300009012\|Ga0066710_100371696	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300009038\|Ga0099829_10038435	All Organisms → cellular organisms → Bacteria	3466	Open in IMG/M
3300009038\|Ga0099829_10843254	Not Available	761	Open in IMG/M
3300009038\|Ga0099829_11617156	Not Available	534	Open in IMG/M
3300009089\|Ga0099828_10541315	Not Available	1049	Open in IMG/M
3300009090\|Ga0099827_10065959	All Organisms → cellular organisms → Bacteria	2777	Open in IMG/M
3300009090\|Ga0099827_10237438	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300009094\|Ga0111539_12218582	Not Available	637	Open in IMG/M
3300009143\|Ga0099792_10640426	Not Available	682	Open in IMG/M
3300009553\|Ga0105249_11043191	Not Available	887	Open in IMG/M
3300009553\|Ga0105249_13224717	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300009792\|Ga0126374_11134661	Not Available	622	Open in IMG/M
3300010043\|Ga0126380_10250161	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300010046\|Ga0126384_10319992	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1282	Open in IMG/M
3300010046\|Ga0126384_11562962	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300010047\|Ga0126382_10630669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas stercoris	887	Open in IMG/M
3300010047\|Ga0126382_11699403	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300010047\|Ga0126382_12239933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	527	Open in IMG/M
3300010359\|Ga0126376_10246461	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300010359\|Ga0126376_11329218	Not Available	740	Open in IMG/M
3300010360\|Ga0126372_11006179	Not Available	845	Open in IMG/M
3300010360\|Ga0126372_11506259	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300010362\|Ga0126377_10865512	All Organisms → cellular organisms → Bacteria → Terrabacteria group	965	Open in IMG/M
3300010362\|Ga0126377_11276897	All Organisms → cellular organisms → Bacteria → Terrabacteria group	806	Open in IMG/M
3300010362\|Ga0126377_11775769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	692	Open in IMG/M
3300010366\|Ga0126379_11983171	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300011271\|Ga0137393_11674173	Not Available	525	Open in IMG/M
3300011416\|Ga0137422_1105706	Not Available	673	Open in IMG/M
3300012038\|Ga0137431_1169367	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300012096\|Ga0137389_10895506	Not Available	761	Open in IMG/M
3300012202\|Ga0137363_10817448	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012203\|Ga0137399_10398910	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300012361\|Ga0137360_10304867	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1323	Open in IMG/M
3300012685\|Ga0137397_10364650	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella	1076	Open in IMG/M
3300012923\|Ga0137359_10617896	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300012948\|Ga0126375_10072093	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300012971\|Ga0126369_12360304	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella	618	Open in IMG/M
3300015371\|Ga0132258_10572859	All Organisms → cellular organisms → Bacteria	2832	Open in IMG/M
3300015372\|Ga0132256_102761884	Not Available	590	Open in IMG/M
3300015374\|Ga0132255_106360216	Not Available	500	Open in IMG/M
3300016371\|Ga0182034_11468645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	597	Open in IMG/M
3300017792\|Ga0163161_11455016	Not Available	600	Open in IMG/M
3300018056\|Ga0184623_10140700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1115	Open in IMG/M
3300018077\|Ga0184633_10331717	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	771	Open in IMG/M
3300018082\|Ga0184639_10211621	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300019208\|Ga0180110_1168007	Not Available	997	Open in IMG/M
3300019229\|Ga0180116_1009404	Not Available	673	Open in IMG/M
3300019248\|Ga0180117_1037999	Not Available	634	Open in IMG/M
3300019249\|Ga0184648_1032033	Not Available	673	Open in IMG/M
3300019257\|Ga0180115_1383479	Not Available	781	Open in IMG/M
3300019259\|Ga0184646_1584227	Not Available	916	Open in IMG/M
3300020065\|Ga0180113_1195557	Not Available	902	Open in IMG/M
3300020065\|Ga0180113_1285970	Not Available	782	Open in IMG/M
3300020083\|Ga0194111_10530658	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300020084\|Ga0194110_10382185	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300020603\|Ga0194126_10567605	Not Available	685	Open in IMG/M
3300025910\|Ga0207684_11639576	Not Available	520	Open in IMG/M
3300025927\|Ga0207687_10878723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766	Open in IMG/M
3300025961\|Ga0207712_10018609	All Organisms → cellular organisms → Bacteria	4527	Open in IMG/M
3300027835\|Ga0209515_10088415	All Organisms → cellular organisms → Bacteria → Proteobacteria	2130	Open in IMG/M
3300027846\|Ga0209180_10724463	Not Available	539	Open in IMG/M
3300027862\|Ga0209701_10484402	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300027875\|Ga0209283_10676153	Not Available	647	Open in IMG/M
3300027882\|Ga0209590_10080875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → Abditibacteriia → Abditibacteriales → Abitibacteriaceae → Abditibacterium → Abditibacterium utsteinense	1897	Open in IMG/M
3300027903\|Ga0209488_10632933	Not Available	773	Open in IMG/M
3300027907\|Ga0207428_10068275	All Organisms → cellular organisms → Bacteria	2797	Open in IMG/M
3300027909\|Ga0209382_10581351	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1222	Open in IMG/M
3300028536\|Ga0137415_11388968	Not Available	523	Open in IMG/M
3300028589\|Ga0247818_10586845	Not Available	765	Open in IMG/M
3300031547\|Ga0310887_11003244	All Organisms → cellular organisms → Bacteria → Terrabacteria group	533	Open in IMG/M
3300031562\|Ga0310886_11020585	Not Available	531	Open in IMG/M
3300032075\|Ga0310890_10164858	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1482	Open in IMG/M
3300032159\|Ga0268251_10436811	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300034662\|Ga0314783_038505	Not Available	857	Open in IMG/M
3300034664\|Ga0314786_060065	Not Available	740	Open in IMG/M
3300034666\|Ga0314788_087208	Not Available	682	Open in IMG/M
3300034670\|Ga0314795_041268	Not Available	788	Open in IMG/M
3300034671\|Ga0314796_032281	Not Available	922	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.39%
Host-Associated	Host-Associated	19.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.73%
Plants	Host-Associated → Plants	18.63%
Aquatic	Environmental → Aquatic	16.67%
Human	Host-Associated → Human	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.73%
Freshwater	Environmental → Aquatic → Freshwater	11.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.86%
Sediment	Environmental → Aquatic → Sediment	4.90%
Phylloplane	Host-Associated → Plants → Phylloplane	1.96%
Digestive System	Host-Associated → Human → Digestive System	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.84%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Lake	Environmental → Aquatic → Freshwater → Lake	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.16%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.96%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	7.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.96%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020083	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300020603	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034670	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06037142	3300000033	Soil	MAERKSISTXHVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPXWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
INPhiseqgaiiFebDRAFT_1008006372	3300000364	Soil	MAERKSISTMHVFWKEQEGAPGGWYIETXNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
F24TB_108796933	3300000550	Soil	MAERKSISTMHVFWKEQEGALGGWYIETRNAYSEAVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
F14TC_1014147772	3300000559	Soil	MAERKSISTMHVFWKEQEGAPGGWYIETRNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
JGI11643J11755_115270012	3300000787	Soil	MAERKSISTVHVFWKEQEGAPGGWYIETRNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0063356_1000513593	3300004463	Arabidopsis Thaliana Rhizosphere	MAERKSISTVHVFWKEQEGAVGGWYIETRNAYSEAVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0063356_1026746832	3300004463	Arabidopsis Thaliana Rhizosphere	MAERKSISTVHVFWKEQEGTTPSGWYIETRNAYSEAVGDSQHLDWDGPPPKHYQKHDAEKLCAHLQLWEPEARVIMHL*
Ga0058859_105131212	3300004798	Host-Associated	MAERKSISTVHVFWKEQEGAAGEWYIETRNAYNEAVGDSRQPDWDGPPPNNYQKHDAEKLCAHVQLWEPEARVVMHL*
Ga0065704_102127982	3300005289	Switchgrass Rhizosphere	MAERKSISTMHVFWKEQEGAPSGWYIETRNAYSETVGDSRQPDWDGPPPMNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0065705_100319672	3300005294	Switchgrass Rhizosphere	MAERKSISTMHVFWKEQEGAPGGWYIETRNAYSETVGDSRQPDWDGPPPMNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0065705_102907851	3300005294	Switchgrass Rhizosphere	MAERKSISTMHVFWKEQEGAPSGWYIETRNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0065707_105140451	3300005295	Switchgrass Rhizosphere	MAERKSISTMHVFWKEQEGAPGEWYIETRNAYSETVSDSRQPDWDGPPPMNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0066388_1005016993	3300005332	Tropical Forest Soil	MAERKSISTMHVFWKEQEGAQGGWYIETRNAYSETVGDSQQPDWDGPSPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0066388_1032570703	3300005332	Tropical Forest Soil	GMAERKSISTMHVFWKEQEGAPGGWYIETRNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0066388_1068923102	3300005332	Tropical Forest Soil	MAERKSISTMHVFWKKRDGAPGGWYIETAAYNEAVGDSRQPDWDGPPPKNYQKQDAETLCAHL*
Ga0070706_1013500902	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGERSSISSMHVFWKEQDGAPGGWYIETYNAYGEAVADSRQPDWDGPPLKHYQRHDVETLRAHLELWEPEARAVMHVEVA*
Ga0058697_104248052	3300005562	Agave	MHVFWREQEGGQGGWYIETRNAYGEAVDDSRHPAWNGPPPQNYQKHDAEKLRAHLQLWE
Ga0066903_1032400402	3300005764	Tropical Forest Soil	MGERRSISSMHVFWKEQAGTAGWWYIETRNYYGEAVADSRRPDWDGPPPRNYQRHDAETLCAHLQLWEPEAEVVMHLEGA*
Ga0068862_1010573512	3300005844	Switchgrass Rhizosphere	MAERKSISTVHVFWKEQGGTPGGWYIETRNAYSEAVGDSQQPDWDGPPPQHYQKHEAEKLCGHLQLWEPEARVIMHL*
Ga0075428_1000086832	3300006844	Populus Rhizosphere	MAERKSISTVHVFWQEQAGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0075420_1002829402	3300006853	Populus Rhizosphere	MAERKSISTVHVFWQEQAGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWE
Ga0099791_101083062	3300007255	Vadose Zone Soil	MAERKSISTMHVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPENYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0099793_100149722	3300007258	Vadose Zone Soil	MAERKSISTMHVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0099794_107691561	3300007265	Vadose Zone Soil	HMAERKSISTMHVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPENYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0066710_1003716962	3300009012	Grasslands Soil	MAERKSISTMHVFWKEQEGAAGGWYIETRNAYNEAVGDSRQPDWDGPPPKHYHKHDAETLCAHLQLWEPEARVVMHL
Ga0099829_100384354	3300009038	Vadose Zone Soil	MAERKSISTVHVFWKEQAGAPGGWYIETRNAYNEAVGDARQPDWDGSPPQHYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0099829_108432542	3300009038	Vadose Zone Soil	MGERRSISSMHVFWREQDGTPGGWYIETRNAYGEAVDDSRHPGWDGPPPKNYQKHDAEKLRAHLQLWEPEARVVMHLDGA*
Ga0099829_116171561	3300009038	Vadose Zone Soil	MGERRSISSTHVFWKEQDGTPGWWYIETRNAYGETVADSRQPAWDGPPPKHYQRHDAETLCAHLQLWEPE
Ga0099828_105413151	3300009089	Vadose Zone Soil	MGERRSISSMHVFWREQDGTPGGWYIETRNAYGEAVDDSRHPGWDGPPPKHYQKHDAEKLRAHLQLWEPEARVVMHLDGA*
Ga0099827_100659592	3300009090	Vadose Zone Soil	MAERKSISTVHVFWKEQAGAPGGWYIETRNAYNEAVGDARQPDWDGSPPQHYQKHDAEKLCAHLQLWEPEALVVMHL*
Ga0099827_102374382	3300009090	Vadose Zone Soil	MAERKSISTVQVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPENYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0111539_122185822	3300009094	Populus Rhizosphere	EGAPGGWYIETRNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0099792_106404261	3300009143	Vadose Zone Soil	SISTVQVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0105249_110431911	3300009553	Switchgrass Rhizosphere	MSSRTPLEQRWGSAAGDWAYMAERKSISTVHVFWKEQGGTPGGWYIETRNAYSEAVGDSQQPDWDGPPPQHYQKHEAEKLCGHLQLWEPEARVIMHL*
Ga0105249_132247172	3300009553	Switchgrass Rhizosphere	MAERKSISTVHVFWKEQEGAAGEWYIETRNAYNEAVGDSRQPDWDGPPPNNYQKHDAEKLCAH
Ga0126374_111346611	3300009792	Tropical Forest Soil	QEGIPGGWYIETRNAYSETVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPETHVVMHL*
Ga0126380_102501613	3300010043	Tropical Forest Soil	MAERKSISTMHVFWKEQEGTPGGWYIETRNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0126384_103199922	3300010046	Tropical Forest Soil	MHVFWKEQEGAPGGSYIETHNAYSETVGDSRQADWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0126384_115629621	3300010046	Tropical Forest Soil	MGERRSISSMHVFWKEQDGTPGGWYIETRNFYGEAVADSRQPDWDGPPPKNYQRHDAEKLRAHLELWEPEAWVVMHVEGA*
Ga0126382_106306692	3300010047	Tropical Forest Soil	MGERRSISSMHVFWREQEGAQGGWYIETRNAYGEAVDDSRHPAWDGPPPQNYQKHDAEKLRAHLQLWEPEARVVMHVEGAIG*
Ga0126382_116994032	3300010047	Tropical Forest Soil	GASGGWYIETRNAYGEAVADSRQPDWDGSPPKNYQKHDAEKLRAHLEIWEPEARVVMHVEGA*
Ga0126382_122399332	3300010047	Tropical Forest Soil	MAEGKSISTMHVFWKEQEGTPGGWYIETRNAYSETVGDSRQADWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0126376_102464612	3300010359	Tropical Forest Soil	MHVFWKEQAGAPGGWYIETYHAYGDAVADSRQPDWDGPPPEHYQRHDVENLRTHLELWEPEVRVVLHMEGT*
Ga0126376_113292182	3300010359	Tropical Forest Soil	MHVFWKERAGTPGGWYIETRNYYGEAVADSRRPDWDGPPAKNYQRHDADTLCAHLQLWEPEAEVVMHLEGT*
Ga0126372_110061791	3300010360	Tropical Forest Soil	MHVFWKEQDDTPGGWYIETRNFYGEAVADSRQPDWDGPPPKNYQRHDAEKLRAHLELWEPEAWVVLHVEGA*
Ga0126372_115062592	3300010360	Tropical Forest Soil	MAERKSISTMHVFWKEQEGAPGGSYIETHNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0126377_108655122	3300010362	Tropical Forest Soil	MAERKSISTMHVFWKEQEGTPGGWYIETRNAYSETVGDSQQPDWDGPSPKNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0126377_112768972	3300010362	Tropical Forest Soil	MAERKSIGTMHVFWKEQEGAPGGSYIETHNAYSETVGDSRQADWDGPPPKNYQKHDAEKLCAHLQLWEPETHVVMHL*
Ga0126377_117757691	3300010362	Tropical Forest Soil	ISSMHVFWKEQAGTPGEWYIETRNYYGEVAADSRQPNWDGPPPKNYQRHDAEKLCAHLQLWEPEAEVVMHLEGA*
Ga0126379_119831712	3300010366	Tropical Forest Soil	MHVFWKEQDGTPGGWYIETRNFYGEAVADSRQPDWDGPPPKNYQRHDAEKLRAHLELWEPEAWVVLHVEGA*
Ga0137393_116741731	3300011271	Vadose Zone Soil	TVYVFWKEQAGAPGGWYIETRNAYNEAVGDARQPDWDGSPPQHYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0137422_11057061	3300011416	Soil	GTPSGWYIETRNAYSEAVGDSQHPDWDGPPPKHYQKHDAEKLCAHLQLWEPEARVIMHL*
Ga0137431_11693672	3300012038	Soil	MAERKSISTVHVFWQEHEGTPSGWYIETRNAYSEAVGDSQHPDWDGPPPKHYQKHDAEKLCAHLQLWEPEARVIMHL*
Ga0137389_108955062	3300012096	Vadose Zone Soil	VSVPHWQRYAERDAQLQREIESMAERKSISTVHVFWKEQAGAPGGWYIETRNAYNEAVGDARQPDWDGSPPQHYQKHDAEKLCAHLQLWEPEALVVMHL*
Ga0137363_108174482	3300012202	Vadose Zone Soil	MAERKSISTMQVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0137399_103989102	3300012203	Vadose Zone Soil	MAERKSISTVHVFWKEREGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0137360_103048672	3300012361	Vadose Zone Soil	MAERKSISTMQVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQHYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0137397_103646502	3300012685	Vadose Zone Soil	MAERKSISTVQVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0137359_106178962	3300012923	Vadose Zone Soil	LAERKSISTVQVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0126375_100720932	3300012948	Tropical Forest Soil	MGERRSISSMHVFWREQEGAQGGWYIETRNAYGEAVDDSRHPAWDGPPPQNYQKHDAEKLRAHLQLWEPEARVVMHVEGATG*
Ga0126369_123603042	3300012971	Tropical Forest Soil	MHVFWKEQAGAPGGWYIETRNAYNEAVGDSRQPDWDGPPPKKYQKQDAETLCSHLQLWEPEARVVMHL*
Ga0132258_105728592	3300015371	Arabidopsis Rhizosphere	MAERKSISTVHVFWKEQDGAAGGWYIETRNAYSEAVGDSRQSDWDGPPPKHYQKQDAEKLCAHLQLWEPEARVIMYL*
Ga0132256_1027618842	3300015372	Arabidopsis Rhizosphere	VFWKEQEGASGAWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPEARVVMHL*
Ga0132255_1063602162	3300015374	Arabidopsis Rhizosphere	MAERKSISTVHVFWQEQAGASGGWYIETRNAYSEAVSDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPEARVVMHP*
Ga0182034_114686452	3300016371	Soil	GGWYIETRNAYNEAVGDSRQPDWDGPRPQHYQKHDAETLRDHLHDWEPEADVVMHLEAKA
Ga0163161_114550161	3300017792	Switchgrass Rhizosphere	EGAPGGWYIETRNAYSETVGDSRQPDWDGPPPMNYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0184623_101407002	3300018056	Groundwater Sediment	MGERRSISSMHVFWREQDGTPGGWYIETRNAYGEAVDDSRHPGWDGPPPKHYQKHDAEKLRAHLQLWEPEARVVMHLDGA
Ga0184633_103317171	3300018077	Groundwater Sediment	MGERRSISSTHVFWKEQDSTPGWWYIETRNAYGEAVADSRQPDWDGPPAKNYQRHDAEKLRAH
Ga0184639_102116212	3300018082	Groundwater Sediment	MGERRSISSTHVFWKEQDSTPGWWYIETRNAYGEAVADSRQPDWDGPPAKNYQRHDAEKLRAHLELWEPEARVVIHMEGV
Ga0180110_11680073	3300019208	Groundwater Sediment	HVFWQEHEGTPSGWYIETRNAYSEAVGDSQHPDWDGPPPKHYQKHDAEKLCAHLQLWEPDARVIMHL
Ga0180116_10094042	3300019229	Groundwater Sediment	MAERKSISTVHVFWQEHEGTPSGWYIETRNAYSEAVGDSQHPDWDGPPPEHYQKHDAEKLCAHLQLWEPEARVIMHL
Ga0180117_10379991	3300019248	Groundwater Sediment	WKEQEGTPNGWYIETRNAYSEAVGDSQHPDWDGPPPEHYQKHDAEKLCAHLQLWEPEARVIMHL
Ga0184648_10320332	3300019249	Groundwater Sediment	MGERRSISSMHVFWREQEDAPGGWYIQTRNAYGEEVDNSRHAGWDGPPPKHYQKHDAEKLRAHLQLWEPEARVLMHLDGA
Ga0180115_13834791	3300019257	Groundwater Sediment	MAERKSISTVHVFWQEHEGTPSGWYIETRNAYSEAVGDSQHPDWDGPPPKHYQKHDAEKLCAHLQLWEPDARVIMHL
Ga0184646_15842271	3300019259	Groundwater Sediment	MHVFWREQDGTPGGWYIETRNAYGEAVDDSRHPGWDGPPPKHYQKHDAEKLRAHLQLWEPEARVVMHLDGA
Ga0180113_11955571	3300020065	Groundwater Sediment	MAERKSISTVHAFWKEQEGTPNGWYIETRNAYSEAVGDSQHPDWDGPPPEHYQKHDAEKLCAHLQLWEPEARVIMHL
Ga0180113_12859702	3300020065	Groundwater Sediment	WAYMAERKSISTVHVYWKEQGGTPGGWYIETRNAYSEAVGDSQQPDWDGPPPKHYQKHEAEKLCAHLQLWEPEARVIMHL
Ga0194111_105306582	3300020083	Freshwater Lake	VGERRSFSSMHVFWRDIEGIAGGWYIETRNAYNEEVDNSRHPAWDGPPPKNYQRQDAETLRAHLQLWEPEARVVMHVDGM
Ga0194110_103821851	3300020084	Freshwater Lake	VGERRSFSSMHVFWRDIEGIAGGWYIETRNAYNEEVDNSRHPAWDGPPPKNYQRQDAETLRAHLQLWEPEARVVMHVDAM
Ga0194126_105676052	3300020603	Freshwater Lake	MHVFWRDIEGIAGGWYIETRNAYNEEVDNSRHPAWDGPPPKNYQRQDAETLRAHLQLWEPEARVVMHVDAM
Ga0207684_116395762	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGERSSISSMHVFWKEQDGAPGGWYIETYNAYGEAVADSRQPDWDGPPLKHYQRHDVETLRAHLELWEPEARAVMHVEVA
Ga0207687_108787232	3300025927	Miscanthus Rhizosphere	MAERKSISTVHVFWKEQEGAAGEWYIETRNAYNEAVGDSRQPDWDGPPPNNYQKHDAEKLCAHVQLWEPEARVVMHL
Ga0207712_100186094	3300025961	Switchgrass Rhizosphere	MAERKSISTMHVFWKEQEGAPGGWYIETRNAYSETVGDSRQPDWDGPPPMNYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0209515_100884152	3300027835	Groundwater	MGERRSISSTHVFWKEQDGTPGWWYIETRNAYGEAVADSRQPDWDGPPPKNYQRHDAEKLRAHLDLWEPEARVVMHVEGT
Ga0209180_107244631	3300027846	Vadose Zone Soil	REIESMAERKSISTVHVFWKEQAGAPGGWYIETRNAYNEAVGDARQPDWDGSPPQHYQKHDAEKLCAHLQLWEPEALVVMHL
Ga0209701_104844022	3300027862	Vadose Zone Soil	MAERKSISTVHVFWKEQAGAPGGWYIETRNAYNEAVGDARQPDWDGSPPQHYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0209283_106761532	3300027875	Vadose Zone Soil	MHVFWREQDGTPGGWYIETRNAYGEAVDDSRHPGWDGPPPKNYQKHDAEKLRAHLQLWEPEARVVMHLDGA
Ga0209590_100808752	3300027882	Vadose Zone Soil	MAERKSISTVHVFWKEQAGAPGGWYIETRNAYNEAVGDARQPDWDGSPPQHYQKHDAEKLCAHLQLWEPEALVVMHL
Ga0209488_106329331	3300027903	Vadose Zone Soil	MAERKSISTVQVFWKEQEGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQNYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0207428_100682752	3300027907	Populus Rhizosphere	MAERKSISTVHVFWQEQAGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0209382_105813512	3300027909	Populus Rhizosphere	MAERKSISTVHVFWQEQAGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPE
Ga0137415_113889681	3300028536	Vadose Zone Soil	APGGWYIETRNAYSEAVGDSRQPDWDGPPPENYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0247818_105868451	3300028589	Soil	ISTMHVFWKEQEGAPGGWYIETRNAYSETVGDSRQPDWDGPPPMNYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0310887_110032442	3300031547	Soil	MAERKSISTVHVFWQEQAGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLYAHLQLWEPEARVVMHL
Ga0310886_110205851	3300031562	Soil	MSSRTPLEQRWGSAAGDWAYMAERKSISTVHVFWKEQGGTPGGWYIETRNAYSEAVGDSQQPDWDGPPPQHYQKHEAEKLCGHLQLWEPEARVIMH
Ga0310890_101648582	3300032075	Soil	MAERKSISTVHVFWQEQAGALGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0268251_104368112	3300032159	Agave	MAERRSISSMHVFWREQEGGQGGWYIETRNAYGEAVDDSRHPAWNGPPPQNYQKHDAEKLRAHLQLWEPEA
Ga0314783_038505_10_243	3300034662	Soil	MAERKSISTMHVFWKEQEGAPGGWYIETRNAYSETVGDSRQPDWDGPPPKNYQKHDAEKLYAHLQLWEPEARVVMHL
Ga0314786_060065_10_216	3300034664	Soil	VHVFWQEQAGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0314788_087208_505_681	3300034666	Soil	APGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDAEKLCAHLQLWEPEARVVMHL
Ga0314795_041268_432_665	3300034670	Soil	MAERKSISTVHVFWQEQAGAPGGWYIETRNAYSEAVGDSRQPDWDGPPPQQYQKHDTEKLCAHLQLWEPEARVVMHL
Ga0314796_032281_582_875	3300034671	Soil	MSNSTPLEQRWGSAAGDWAYMAERKSISTVHVFWKEQGGTPGGWYIETRNAYSEAVGDSQQPDWDGPPPKHYQKHEAEKLCGHLQLWEPEARIIMHL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100632

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences