Metagenome / Metatranscriptome Family F100603

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100603
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	60 residues
Representative Sequence	NPHAVSGEEVAARAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Number of Associated Samples	81
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	87.25 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.392 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.274 % of family members)
Environment Ontology (ENVO)	Unclassified (49.020 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.44% β-sheet: 0.00% Coil/Unstructured: 85.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04280	Tim44	14.71
PF02538	Hydantoinase_B	8.82

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	17.65
COG4395	Predicted lipid-binding transport protein, Tim44 family	Lipid transport and metabolism [I]	14.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	67.65 %
Unclassified	root	N/A	19.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.65 %
Unclassified	root	N/A	19.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100512882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300004633\|Ga0066395_10271110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	917	Open in IMG/M
3300005332\|Ga0066388_105215973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300005332\|Ga0066388_105358459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300005363\|Ga0008090_10246183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300005450\|Ga0066682_10855085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300005467\|Ga0070706_101151071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300005764\|Ga0066903_107511446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300005764\|Ga0066903_108257448	Not Available	532	Open in IMG/M
3300005764\|Ga0066903_108638654	Not Available	518	Open in IMG/M
3300005764\|Ga0066903_109119645	Not Available	501	Open in IMG/M
3300005841\|Ga0068863_102456296	Not Available	530	Open in IMG/M
3300005981\|Ga0081538_10314329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300006028\|Ga0070717_11753264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300006845\|Ga0075421_100089415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3881	Open in IMG/M
3300006852\|Ga0075433_10976344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300009137\|Ga0066709_103281239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300009792\|Ga0126374_10946845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300010043\|Ga0126380_10782202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300010046\|Ga0126384_11993176	Not Available	555	Open in IMG/M
3300010323\|Ga0134086_10081917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1124	Open in IMG/M
3300010358\|Ga0126370_12270938	Not Available	536	Open in IMG/M
3300010361\|Ga0126378_12230193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300010362\|Ga0126377_11355215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	784	Open in IMG/M
3300010366\|Ga0126379_10451076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1347	Open in IMG/M
3300010366\|Ga0126379_12540695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300010366\|Ga0126379_13193436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300010398\|Ga0126383_10442649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1347	Open in IMG/M
3300010398\|Ga0126383_11487029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300010398\|Ga0126383_11857568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300010398\|Ga0126383_13459636	Not Available	516	Open in IMG/M
3300010868\|Ga0124844_1161228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	842	Open in IMG/M
3300012200\|Ga0137382_10533504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	835	Open in IMG/M
3300012202\|Ga0137363_10067107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2627	Open in IMG/M
3300012351\|Ga0137386_10329840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1098	Open in IMG/M
3300012354\|Ga0137366_11116953	Not Available	541	Open in IMG/M
3300012362\|Ga0137361_11161404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300012363\|Ga0137390_11144532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300012961\|Ga0164302_10031634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2437	Open in IMG/M
3300012971\|Ga0126369_10557038	Not Available	1212	Open in IMG/M
3300012971\|Ga0126369_10623868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1150	Open in IMG/M
3300012971\|Ga0126369_13340697	Not Available	526	Open in IMG/M
3300012977\|Ga0134087_10525644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300016270\|Ga0182036_10097034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1993	Open in IMG/M
3300016270\|Ga0182036_11591611	Not Available	550	Open in IMG/M
3300016341\|Ga0182035_12028193	Not Available	523	Open in IMG/M
3300016371\|Ga0182034_11886895	Not Available	527	Open in IMG/M
3300016404\|Ga0182037_10932098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	754	Open in IMG/M
3300018468\|Ga0066662_10641897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1002	Open in IMG/M
3300021560\|Ga0126371_11311035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	857	Open in IMG/M
3300021560\|Ga0126371_12331249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300021560\|Ga0126371_13218067	Not Available	552	Open in IMG/M
3300025916\|Ga0207663_10674546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	817	Open in IMG/M
3300026295\|Ga0209234_1073743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1297	Open in IMG/M
3300026540\|Ga0209376_1058940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2155	Open in IMG/M
3300026552\|Ga0209577_10530021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	764	Open in IMG/M
3300026557\|Ga0179587_10093456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1809	Open in IMG/M
3300031543\|Ga0318516_10043174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2431	Open in IMG/M
3300031544\|Ga0318534_10620808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300031561\|Ga0318528_10322391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	829	Open in IMG/M
3300031564\|Ga0318573_10085071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1603	Open in IMG/M
3300031680\|Ga0318574_10029480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2760	Open in IMG/M
3300031681\|Ga0318572_10875972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300031713\|Ga0318496_10566054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300031724\|Ga0318500_10315545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300031744\|Ga0306918_10090279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2155	Open in IMG/M
3300031744\|Ga0306918_10201739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1499	Open in IMG/M
3300031748\|Ga0318492_10812917	Not Available	503	Open in IMG/M
3300031765\|Ga0318554_10679064	Not Available	578	Open in IMG/M
3300031768\|Ga0318509_10466044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300031770\|Ga0318521_10011925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3780	Open in IMG/M
3300031777\|Ga0318543_10167553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	969	Open in IMG/M
3300031779\|Ga0318566_10167981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1089	Open in IMG/M
3300031797\|Ga0318550_10039934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2065	Open in IMG/M
3300031799\|Ga0318565_10079931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1553	Open in IMG/M
3300031805\|Ga0318497_10764991	Not Available	541	Open in IMG/M
3300031832\|Ga0318499_10010717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2972	Open in IMG/M
3300031832\|Ga0318499_10028418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2001	Open in IMG/M
3300031833\|Ga0310917_10498372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300031880\|Ga0318544_10277747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300031910\|Ga0306923_10533265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1324	Open in IMG/M
3300031910\|Ga0306923_10790859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1048	Open in IMG/M
3300031912\|Ga0306921_10201888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2329	Open in IMG/M
3300031912\|Ga0306921_10991150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	948	Open in IMG/M
3300031941\|Ga0310912_11209420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300031941\|Ga0310912_11275856	Not Available	557	Open in IMG/M
3300031941\|Ga0310912_11505356	Not Available	506	Open in IMG/M
3300031945\|Ga0310913_10785918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300031954\|Ga0306926_10413607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1663	Open in IMG/M
3300031981\|Ga0318531_10263268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300032009\|Ga0318563_10062034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1931	Open in IMG/M
3300032039\|Ga0318559_10136485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1108	Open in IMG/M
3300032041\|Ga0318549_10216582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300032041\|Ga0318549_10577821	Not Available	504	Open in IMG/M
3300032044\|Ga0318558_10279203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300032054\|Ga0318570_10017626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2653	Open in IMG/M
3300032059\|Ga0318533_11039724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300032063\|Ga0318504_10146750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300032066\|Ga0318514_10471419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300032068\|Ga0318553_10437005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300032076\|Ga0306924_10760378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300032090\|Ga0318518_10423290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.08%
Host-Associated	Host-Associated	3.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.08%
Plants	Host-Associated → Plants	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.29%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1005128821	3300000364	Soil	RRDGHRACNPHAVSGEEAAARAARYAHRRDPGITGSLGLRRSASAWSFEERPPRTLPMAEPGGDGEFDN*
Ga0066395_102711101	3300004633	Tropical Forest Soil	RAARYAGKRDPGITGSLAPRRVAAPRWPFDSDEQRRALPTAQPGEDGEDD*
Ga0066388_1052159731	3300005332	Tropical Forest Soil	PHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSGEERRALPMAQPGEDGEDD*
Ga0066388_1053584591	3300005332	Tropical Forest Soil	RDGHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRLAAPRWPFDSGEERRALPTAQPGEDGEDD*
Ga0008090_102461832	3300005363	Tropical Rainforest Soil	AVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSGEERRALPMAQPGEDGEDD*
Ga0066682_108550852	3300005450	Soil	GHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRSAAGWFEERRARTLLMAEPGADGEDD*
Ga0070706_1011510711	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AARAARYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD*
Ga0066903_1075114461	3300005764	Tropical Forest Soil	HAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDPDEERRARALPMAQPGEDGQDD*
Ga0066903_1082574482	3300005764	Tropical Forest Soil	RDGHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSGEERRALPMAQPGEDGEDD*
Ga0066903_1086386541	3300005764	Tropical Forest Soil	CNPHAVSGEEVAARAARYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD*
Ga0066903_1091196451	3300005764	Tropical Forest Soil	CNPHAVSGEEVAARAARYAGKRDPGITGSLARRRVAAPRWPFDSDEQRRALPTAQPGEDGQDD*
Ga0068863_1024562962	3300005841	Switchgrass Rhizosphere	GHRACNPHAVSGEEAAARAARYAHRRDPGTTGSLGPRRSASAWSFEERPPRTLPMAEPGGDGEFDN*
Ga0081538_103143291	3300005981	Tabebuia Heterophylla Rhizosphere	ACNPHAVSGEEVAARAARYAGKRDPGITGSVAPRRWFESRRAQGLPIARPGEDGADD*
Ga0070717_117532642	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GEEVAARAARYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD*
Ga0075421_1000894157	3300006845	Populus Rhizosphere	RACNPHAVSGEEVAARAARYAGRRDPGITGSLAPRRSAAASWFEERRPRSLPVAEPGQDGEDD*
Ga0075433_109763442	3300006852	Populus Rhizosphere	RRDGHRACNPHAVSGEEVAARAARYAIKRDPGITGSLAPRRSAAPRWPFDSDEERRERALPMAQPGEDGEDD*
Ga0066709_1032812391	3300009137	Grasslands Soil	HAVSGEEVAARAARYAGKRDGGITGSLAPYRSTARSFDDRRARPLPTAEPGEDGEDD*
Ga0126374_109468451	3300009792	Tropical Forest Soil	MRRRDGHRACNPHAMSGEEAAARAARYAGKRDPGITGSLAPRRSAARSFEDRRARSLPMARPGEDGEDD*
Ga0126380_107822022	3300010043	Tropical Forest Soil	VSGEEVAARAARYAIKRDPGITGSVAPRRSVAQRWRFDPDEERRERALPMAEPGQDGEDD
Ga0126384_119931762	3300010046	Tropical Forest Soil	RDGHRACNPHAVSGEEVAARAARYAIKGDPGITGSLAPRRSAATRWPFDSGEERRALPMAQPGEDGEDD*
Ga0134086_100819171	3300010323	Grasslands Soil	RDGHRACNPHAVSGEEVAARAARYAGKRDGGITGSLAPYRSSARSFEDRRARPLPMAEPGEDGEDG*
Ga0126370_122709381	3300010358	Tropical Forest Soil	EVAARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD*
Ga0126378_122301932	3300010361	Tropical Forest Soil	AARAARYAIKHDPGVTGSLAPRRSAAPRWRSDEEQRERALPMAEPGADGEDD*
Ga0126377_113552152	3300010362	Tropical Forest Soil	RDGHRACNPHAVSGEEVAARAARYAGRRDPGITGSLAGRRSARWFGERRSVRTAEPGADGEDD*
Ga0126379_104510761	3300010366	Tropical Forest Soil	AARAARYAIKHDPGITGSLAPRRSAAPRWRSDEEQRERALPMAEPGADGEDD*
Ga0126379_125406952	3300010366	Tropical Forest Soil	VAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSGEERRALPMAQPGEDGEDD*
Ga0126379_131934361	3300010366	Tropical Forest Soil	RAARYAIKRDPGITGSLAPRRSAAPRGPFDPAEERRARALPMAQPGEDGQDD*
Ga0126383_104426491	3300010398	Tropical Forest Soil	ARAARYAGRRDPGITGSLAGRQSARWFGERRSMRTAEPGADGEDD*
Ga0126383_114870291	3300010398	Tropical Forest Soil	VAARAARYAIKRDPGITGSVAPRRSAAQRWRFDPDEERREHALPMAEPGQDGEDD*
Ga0126383_118575682	3300010398	Tropical Forest Soil	RRDGHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSDEQRRALPTAQPGEDGEDD*
Ga0126383_134596361	3300010398	Tropical Forest Soil	ACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRLAAPRWPFDSGEERRALPTAQPGEDGEDD*
Ga0124844_11612282	3300010868	Tropical Forest Soil	ARAARYAIKRDPGITGSVAPRRSAAQRWRFDPDEERRERALPMAEPGQDGEDD*
Ga0137382_105335042	3300012200	Vadose Zone Soil	RRRDGHRACNPHAVSGEEAAARAARYVGRRDPGITGSLGPGRSAAARSLEERRGRTLPMAEPGGDGEFD*
Ga0137363_100671071	3300012202	Vadose Zone Soil	HRACNPHAVSGEEVAARAARYAGKRDRGITGSLAPHRSAARSFEERRARALPTAEPGEDGEDD*
Ga0137386_103298401	3300012351	Vadose Zone Soil	ACNPHAVSGEEVAARAARYAGKRDGGITGSLAPYRSTPRSFEDRRARPLPAGDPGEDGEDD*
Ga0137366_111169531	3300012354	Vadose Zone Soil	EVAARAARYAIKRDPGITGSVAPRRLAAPRWRFDPDEERRERALPMAEPGADGEDD*
Ga0137361_111614042	3300012362	Vadose Zone Soil	VAARAARYAIKRDPGITGSLAPRRSAAQRWRPDEEQRERALPMAEPGADGEDD*
Ga0137390_111445322	3300012363	Vadose Zone Soil	CNPHAVSGEEVAAGAARYAGKRDRGITGSLAPHRSAARSFEERRARALPTAEPGEDGEDD
Ga0164302_100316343	3300012961	Soil	DEAAARAARYAHRRDPGTTGSLGPRRSASAWSFEERPPRTLPMAEPGGDGEFDN*
Ga0126369_105570382	3300012971	Tropical Forest Soil	GEEVAARAARYVGTRDAGITGSLGPRRSAASFEERRARALPMAEPGGDGEFD*
Ga0126369_106238681	3300012971	Tropical Forest Soil	GHRACNPHAVSGEEVAARAARYAIKHDPGITGSLAPRRSAAQRWRFDEEQRERALPMAEPGADGEDD*
Ga0126369_133406971	3300012971	Tropical Forest Soil	RRDGHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSGQERRALPMAQPGEDGEDD*
Ga0134087_105256441	3300012977	Grasslands Soil	ACNPHAVSGEEVAARAARYAGKRDGGITGSLAPYRSAARSFEDRRARPLPAGEPGEDGEDD*
Ga0182036_100970341	3300016270	Soil	AARAARYAIKRDPGITGSLAPRRSAAQRWRFDPDEERRERALPMAEPGADGEGD
Ga0182036_115916112	3300016270	Soil	GEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSDEQRRALPTAQPGEDGEDD
Ga0182035_120281932	3300016341	Soil	AVSGEEVAARAARYAGKRDPGITGSLAPRRAAAPRSPFDSDEQRRALPMAQPGEDGQDD
Ga0182034_118868951	3300016371	Soil	ACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD
Ga0182037_109320982	3300016404	Soil	RACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRSPFDSDEQRRALPMAQPGEDGQDD
Ga0066662_106418971	3300018468	Grasslands Soil	EVAARAARYAGKRDGGITGSLAPYRSSARSFEDRRARPLPMAEPGEDGEDD
Ga0126371_113110351	3300021560	Tropical Forest Soil	AAARAARYAVKRDPGITGSLSARRTASPRWFEERRARAVPVAQPGEDGEDD
Ga0126371_123312492	3300021560	Tropical Forest Soil	GEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSGEERRALPMAQPGEDGEDD
Ga0126371_132180672	3300021560	Tropical Forest Soil	DGHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSGEERRALPMAQPGEDGEDD
Ga0207663_106745461	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RACNPHAVSGEEAAARAARYAHRRDPGITGSLGLRRSASAWSFEERPPRTLPMAEPGGDGEFDN
Ga0209234_10737432	3300026295	Grasslands Soil	SGEEAAARAARYAHRRDPGTTGSLGPRRSASAWSFEERPPRTLPMAEPGGDGEFDN
Ga0209376_10589403	3300026540	Soil	RRDGHRACNPHAVSGEEVAARAARYAGKRDGGITGSLAPYRSSARSFEDRRARPLPMAEPGEDGEDG
Ga0209577_105300211	3300026552	Soil	EVAARAARYVGRRDPGITGSLGPRRSAASFEERRARALPMAEPGGDGEFD
Ga0179587_100934563	3300026557	Vadose Zone Soil	AVSGEEVAARAARYAGKRDRGITGSLAPHRSAARSFEERRARALPTAEPGEDGEDD
Ga0318516_100431741	3300031543	Soil	NPHAVSGEEVAARAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318534_106208081	3300031544	Soil	VSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD
Ga0318528_103223912	3300031561	Soil	CNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD
Ga0318573_100850711	3300031564	Soil	RDGHRACNPHAVSGEEVAARAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318574_100294801	3300031680	Soil	PHAVSGEEVASRAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGED
Ga0318572_108759722	3300031681	Soil	RAARYAGKRDPGITGSLAPRRVAAPRSPFDSDEQRRALPMAQPGEDGQDD
Ga0318496_105660542	3300031713	Soil	AARAARYAGKRDPGITGSLAPRRLAAPRWPFDSGEERRALPTAQPGEDGEDD
Ga0318500_103155452	3300031724	Soil	RRDGHRACNPHAVSGEEVAARAARYAIKHDPGITGSLAPRRSAAQRWRFDPDEERRERALPMAEPGADGEDD
Ga0306918_100902791	3300031744	Soil	VSGEEVAARAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0306918_102017391	3300031744	Soil	RACNPHAVSGEEVAARAARYAGRRDPGITGSLAPRQSAWWFGERRSMRTAEPGADGEDD
Ga0318492_108129171	3300031748	Soil	PHAVSGEEVAARAGRYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD
Ga0318554_106790641	3300031765	Soil	AVSGEEVASRAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318509_104660442	3300031768	Soil	VSGEEVAARAARYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD
Ga0318521_100119254	3300031770	Soil	SGEEVAARAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318543_101675533	3300031777	Soil	ACNPHAVSGEEVAARAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318566_101679812	3300031779	Soil	VSGEEVAARAARYAGKRDPGITGSLAPHRLAAPRWPFDSGEERRALPTAQPGEDGEDD
Ga0318550_100399343	3300031797	Soil	HRACNPHAVSGEEVAARAARYAIKHDPGITGSLAPRRLAAQRWRFNPDEERRERALPMAEPGADGEDN
Ga0318565_100799311	3300031799	Soil	AARAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318497_107649911	3300031805	Soil	VASRAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318499_100107171	3300031832	Soil	ARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD
Ga0318499_100284183	3300031832	Soil	GEEVAARAARYAIKHDPGITGSLASRRLAAQRWRFNPDEERRERALPMAEPGADGEDN
Ga0310917_104983721	3300031833	Soil	ARAARYAGKRDPGITGSLAPRRVAAPRSPFDSDEQRRALPMAQPGEDGQDD
Ga0318544_102777471	3300031880	Soil	HAVSGEEVAARAARYAGRRDPGITGSLAPRQSARWFGERRSMRTAEPGADGEDD
Ga0306923_105332653	3300031910	Soil	RRRDGHRACNPHAVSGEEVASRAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0306923_107908592	3300031910	Soil	RRDGHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRLAAPRWPFDSGEERRALPTAQPGEDGEDD
Ga0306921_102018881	3300031912	Soil	HRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRSPFDSDEQRRALPMAQPGEDGQDD
Ga0306921_109911501	3300031912	Soil	SGEEVASRAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0310912_112094201	3300031941	Soil	VSGEEVAARAGRYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD
Ga0310912_112758561	3300031941	Soil	HAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD
Ga0310912_115053561	3300031941	Soil	PHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRSPFDSDEQRRALPMAQPGEDGQD
Ga0310913_107859182	3300031945	Soil	AVSGEEVAARAARYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGED
Ga0306926_104136071	3300031954	Soil	AARAARYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD
Ga0318531_102632682	3300031981	Soil	NPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRSPFDSDEQRRALPMAQPGEDGQDD
Ga0318563_100620343	3300032009	Soil	AVSGEEVAARAARYAIKHDPGITGSLAPRRLAAQRWRFNPDEERRERALPMAEPGADGED
Ga0318559_101364852	3300032039	Soil	VAARAARYAGKRDPGITGSLAPHRLAAPRWPFDSGEERRALPTAQPGEDGEDD
Ga0318549_102165821	3300032041	Soil	HRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRAAAPRSPFDSDEQRRALPMAQPGEDGQDD
Ga0318549_105778211	3300032041	Soil	HRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD
Ga0318558_102792032	3300032044	Soil	AVSGEEVAARAARYAGRRDPGITGSLAPRQSAWWFGERRSMRTAEPGADGEDD
Ga0318570_100176261	3300032054	Soil	GEEVASRAARYAIKRDPGITGSLAPRRLAAPRWPFDSDEERRALPMAQPGEDGEDD
Ga0318533_110397242	3300032059	Soil	ACGLHAVSGEEVAARAARYAIKRDPGITGSLAPRRSAAPRWPFDPDEERRERALPMAQPGEDGEDD
Ga0318504_101467502	3300032063	Soil	AVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWLFDSDEEPRSLPMAQPGEDGDDD
Ga0318514_104714191	3300032066	Soil	LHAVSGEEVAARAARYAIKHDPGITGSLAPRRSAAQRWRFDPDEERRERALPMAEPGADGEDD
Ga0318553_104370052	3300032068	Soil	GHRACNPHAVSGEEVAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSDEQRRALPTAQPGEDGEDD
Ga0306924_107603781	3300032076	Soil	VAARAARYAGKRDPGITGSLAPRRVAAPRWPFDSDEQRRALPTAQPGEDGEDD
Ga0318518_104232902	3300032090	Soil	PHAVSGEEVAARAARYAIKHDPGITGSLAPRRLAAQRWRFNPDEERRERALPMAEPGADGEDN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100603

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences