Metagenome / Metatranscriptome Family F100554

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100554
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	45 residues
Representative Sequence	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATDQPSNIPDQK
Number of Associated Samples	75
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.784 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.412 % of family members)
Environment Ontology (ENVO)	Unclassified (48.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.863 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 22.67% β-sheet: 0.00% Coil/Unstructured: 77.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00346	Complex1_49kDa	5.88
PF13417	GST_N_3	0.98
PF04519	Bactofilin	0.98
PF07386	DUF1499	0.98
PF13505	OMP_b-brl	0.98
PF10908	DUF2778	0.98
PF06055	ExoD	0.98
PF13701	DDE_Tnp_1_4	0.98
PF11149	DUF2924	0.98
PF00122	E1-E2_ATPase	0.98
PF13488	Gly-zipper_Omp	0.98
PF02518	HATPase_c	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	5.88
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	5.88
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.98
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.98
COG2216	K+ transport ATPase, ATPase subunit KdpB	Inorganic ion transport and metabolism [P]	0.98
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.98
COG3932	Exopolysaccharide synthesis protein ExoD	Cell wall/membrane/envelope biogenesis [M]	0.98
COG4446	Uncharacterized conserved protein, DUF1499 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.65 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.84 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	4.90 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.90 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	4.90 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	4.90 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	1.96 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Rhizobium etli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli	4.90 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	1.96 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Rhizobium etli CNPAF512	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	4.90 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	1.96 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02FL578	Not Available	504	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10105870	Not Available	691	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10134116	Not Available	515	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1010336	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1071144	Not Available	548	Open in IMG/M
3300000955\|JGI1027J12803_100477096	Not Available	619	Open in IMG/M
3300002917\|JGI25616J43925_10025193	Not Available	2639	Open in IMG/M
3300004629\|Ga0008092_11329642	Not Available	732	Open in IMG/M
3300005332\|Ga0066388_103603149	Not Available	790	Open in IMG/M
3300005332\|Ga0066388_107159233	Not Available	561	Open in IMG/M
3300005363\|Ga0008090_10073409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	528	Open in IMG/M
3300005555\|Ga0066692_10319538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	985	Open in IMG/M
3300005713\|Ga0066905_100562340	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005764\|Ga0066903_102653236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300005764\|Ga0066903_102721972	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005764\|Ga0066903_104806261	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300005764\|Ga0066903_105148892	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005764\|Ga0066903_105521327	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300005764\|Ga0066903_109054046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300006034\|Ga0066656_10845077	Not Available	586	Open in IMG/M
3300006854\|Ga0075425_101836763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	680	Open in IMG/M
3300009012\|Ga0066710_103481920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300010043\|Ga0126380_10149211	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300010046\|Ga0126384_11086418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300010046\|Ga0126384_11204412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300010048\|Ga0126373_10988833	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300010358\|Ga0126370_11248861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300010358\|Ga0126370_11595926	Not Available	624	Open in IMG/M
3300010359\|Ga0126376_11947535	Not Available	628	Open in IMG/M
3300010360\|Ga0126372_11338336	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300010376\|Ga0126381_100635907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1521	Open in IMG/M
3300010376\|Ga0126381_104656316	Not Available	528	Open in IMG/M
3300010398\|Ga0126383_10089928	Not Available	2710	Open in IMG/M
3300010398\|Ga0126383_11483352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300010398\|Ga0126383_12491342	Not Available	602	Open in IMG/M
3300012199\|Ga0137383_10328730	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300012202\|Ga0137363_10463480	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300012204\|Ga0137374_10660040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300012205\|Ga0137362_10134784	All Organisms → cellular organisms → Bacteria → Proteobacteria	2103	Open in IMG/M
3300012208\|Ga0137376_10459529	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300012210\|Ga0137378_10265528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1597	Open in IMG/M
3300012211\|Ga0137377_10848122	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300012211\|Ga0137377_11464804	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300012211\|Ga0137377_11813163	Not Available	529	Open in IMG/M
3300012354\|Ga0137366_11131874	Not Available	537	Open in IMG/M
3300012917\|Ga0137395_10068518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2284	Open in IMG/M
3300012957\|Ga0164303_10039608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2009	Open in IMG/M
3300016270\|Ga0182036_10284795	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300016319\|Ga0182033_11845983	Not Available	549	Open in IMG/M
3300016341\|Ga0182035_11504540	Not Available	606	Open in IMG/M
3300016371\|Ga0182034_10668110	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300016371\|Ga0182034_11409544	Not Available	609	Open in IMG/M
3300016371\|Ga0182034_11468490	Not Available	597	Open in IMG/M
3300016387\|Ga0182040_11230600	Not Available	630	Open in IMG/M
3300016422\|Ga0182039_10957545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	766	Open in IMG/M
3300021560\|Ga0126371_11675776	Not Available	760	Open in IMG/M
3300021560\|Ga0126371_11790075	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300021976\|Ga0193742_1200450	Not Available	527	Open in IMG/M
3300025922\|Ga0207646_11814117	Not Available	521	Open in IMG/M
3300026507\|Ga0257165_1091233	Not Available	563	Open in IMG/M
3300027671\|Ga0209588_1114940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	863	Open in IMG/M
3300031543\|Ga0318516_10065388	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300031668\|Ga0318542_10418840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300031744\|Ga0306918_10723558	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300031744\|Ga0306918_11571972	Not Available	501	Open in IMG/M
3300031763\|Ga0318537_10132904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	925	Open in IMG/M
3300031765\|Ga0318554_10796454	Not Available	528	Open in IMG/M
3300031771\|Ga0318546_10719166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300031781\|Ga0318547_10275220	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300031794\|Ga0318503_10084455	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300031794\|Ga0318503_10174575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695	Open in IMG/M
3300031796\|Ga0318576_10358025	Not Available	689	Open in IMG/M
3300031797\|Ga0318550_10046340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1938	Open in IMG/M
3300031833\|Ga0310917_10054775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2460	Open in IMG/M
3300031833\|Ga0310917_10472458	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300031879\|Ga0306919_10287653	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300031880\|Ga0318544_10156870	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300031880\|Ga0318544_10328589	Not Available	594	Open in IMG/M
3300031890\|Ga0306925_10048367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4426	Open in IMG/M
3300031890\|Ga0306925_11561410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	643	Open in IMG/M
3300031890\|Ga0306925_11975261	Not Available	551	Open in IMG/M
3300031893\|Ga0318536_10051601	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300031910\|Ga0306923_10585101	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300031912\|Ga0306921_10675318	Not Available	1189	Open in IMG/M
3300031912\|Ga0306921_11978171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	621	Open in IMG/M
3300031941\|Ga0310912_10321451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	1199	Open in IMG/M
3300031941\|Ga0310912_10899135	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300031946\|Ga0310910_11061975	Not Available	631	Open in IMG/M
3300031946\|Ga0310910_11119959	Not Available	612	Open in IMG/M
3300031981\|Ga0318531_10294369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	733	Open in IMG/M
3300032001\|Ga0306922_10566354	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300032001\|Ga0306922_10630510	Not Available	1133	Open in IMG/M
3300032010\|Ga0318569_10488302	Not Available	574	Open in IMG/M
3300032025\|Ga0318507_10276524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300032035\|Ga0310911_10128027	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300032035\|Ga0310911_10277487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	962	Open in IMG/M
3300032043\|Ga0318556_10014548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3395	Open in IMG/M
3300032054\|Ga0318570_10316075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300032059\|Ga0318533_10740226	Not Available	721	Open in IMG/M
3300032066\|Ga0318514_10634792	Not Available	568	Open in IMG/M
3300032091\|Ga0318577_10537830	Not Available	556	Open in IMG/M
3300032261\|Ga0306920_104435823	Not Available	502	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.02%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.22%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	52.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021976	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_11552220	2170459003	Grass Soil	MRPAAAILLLAAGLLSVPAANAQVQSPSPGLSDPSPNIPDQKLEASLKRD
AF_2010_repII_A1DRAFT_101058703	3300000597	Forest Soil	MRVLVWPTAAALLIAVGRLSVPAANAQVQSPSPGLSDQSPNISDQKLDAVAT
AF_2010_repII_A001DRAFT_101341161	3300000793	Forest Soil	MRVLMLPAAAAILLIGADLLCXPAANAQVQSPSPGATVQPSNIPDQKLDAA
AP72_2010_repI_A100DRAFT_10103361	3300000837	Forest Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQKLDAAAAAVE
AP72_2010_repI_A001DRAFT_10711441	3300000893	Forest Soil	MRVLMLPVAAAILLIGADLLCAPAANAQVQSPSPGATVQPSNIPDQKLDAA
JGI1027J12803_1004770961	3300000955	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATVQPSNIPDQKLD
JGI25616J43925_100251931	3300002917	Grasslands Soil	MRILMRPAAAALLIAAGLLSVPAANAQVQSPSPGLSDQSPNIPDQKLDA
Ga0008092_113296422	3300004629	Tropical Rainforest Soil	MRIFTRCAAAMVLIAAGLFLVPAANAQAQSPSPSATDQPSNIPDQK
Ga0066388_1036031492	3300005332	Tropical Forest Soil	MRVLMWPSAAALLIAVGLLSVLAANAQVQSPSPGLSDQSP
Ga0066388_1071592331	3300005332	Tropical Forest Soil	MRVLMWPTAAALLIAVGVPAANAQVQSPSPGLSDQSPDISDQKLD
Ga0008090_100734091	3300005363	Tropical Rainforest Soil	MRVLMLPAAAAILLIGADLLCVPAANAQVQSPSPGATVQPSNIPDQKLDAAAAAVQRVT
Ga0066692_103195382	3300005555	Soil	MRVLMRPITAALLIAAGLLFVPTANAQVQSPSPGLS
Ga0066905_1005623402	3300005713	Tropical Forest Soil	MRVLMLPVAAAILLIGADLLCAPAANAQVQSPSPGATVQPSNIPDQK
Ga0066903_1026532363	3300005764	Tropical Forest Soil	MRIFTRCAAAMVLIAAGLLLVPAANAEVQSPSPGATDQPSNIPDQKIDAAAAAIQQVA
Ga0066903_1027219721	3300005764	Tropical Forest Soil	MRVLMQPAAAAILLIGADLLCAPAANAQVQSPSPGATDQPSNIPD
Ga0066903_1048062612	3300005764	Tropical Forest Soil	MLVVMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPS
Ga0066903_1051488921	3300005764	Tropical Forest Soil	MRVLMLPAAAAILLIGADLLCAPAVNAQVQSPSPGAT
Ga0066903_1055213271	3300005764	Tropical Forest Soil	MRVLMLPAAAAIVLIGADLLCAPAVNAQVQSPSPGATDQPSNIPDQKLDAAA
Ga0066903_1090540461	3300005764	Tropical Forest Soil	MRVLMRPTGAAILLMIGAGLLCSPAANAQAQPPSPGLSEQPPNIPDQKLD
Ga0066656_108450771	3300006034	Soil	MQILTRSTAAVLLIAGGLLGIPAANAQVQSPAPGASDKSASIPDQKLDAAAAAIE
Ga0075425_1018367631	3300006854	Populus Rhizosphere	MRVLMRPAIGLIAAGLLFVPAANAQVQSPSPGLSEQPANIPDQKFDAAAAAIERVA
Ga0066710_1034819201	3300009012	Grasslands Soil	MRILMRPAAAILLIAAGLLSLPAANAQVQPPSPGLSEQPPNIS
Ga0126380_101492111	3300010043	Tropical Forest Soil	MLPVAAAILLIGADLLCAPAANAQVQSPSPGATVQ
Ga0126384_110864182	3300010046	Tropical Forest Soil	MRVLMWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSPNISD
Ga0126384_112044122	3300010046	Tropical Forest Soil	MRVLVWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSPNISD
Ga0126373_109888333	3300010048	Tropical Forest Soil	MLPAAAAIVLIGADLLCAPAVNAQVQSPSPGATAQP
Ga0126370_112488611	3300010358	Tropical Forest Soil	MRVLVWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSPNI
Ga0126370_115959261	3300010358	Tropical Forest Soil	MRVLMWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQS
Ga0126376_119475351	3300010359	Tropical Forest Soil	MLPAAAAILLIGVDLLCAPAVNAQVQSPSPGATAQPSNIP
Ga0126372_113383361	3300010360	Tropical Forest Soil	MLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQKLD
Ga0126381_1006359073	3300010376	Tropical Forest Soil	MRVLMLPAAAAILLIGADLLCAPSVNAQVQSPSPGATD
Ga0126381_1046563161	3300010376	Tropical Forest Soil	MHAPVLMRPAAAAILLIGAGLLCAPAANAQAQPPSPGLSDQSSIRDQ
Ga0126383_100899287	3300010398	Tropical Forest Soil	MLPVAAAILLIGADLLCAPAANAQVQSPSPGATDQPSNIPDQ
Ga0126383_114833521	3300010398	Tropical Forest Soil	MRSAAAILLIAMGFFFIPAASAQVQSPSPGLSQQPQNIPDQKLDAAAAAIKR
Ga0126383_124913422	3300010398	Tropical Forest Soil	MRVLMWPTAAALLVAVELFSVPAANAQVQSPSPGPSGPSLDISDLKLDT
Ga0137383_103287302	3300012199	Vadose Zone Soil	MRVLMRPAAAILLLAAGVLLVPSANAQVQSPSPGLSEQPPNISDQKLDAAAAAI
Ga0137363_104634802	3300012202	Vadose Zone Soil	MRVLIRPAAAILLLAAGVLLVPAANAQVQSPSPGLSE
Ga0137374_106600401	3300012204	Vadose Zone Soil	MRSTAASLLIAAGFLFVPAANAQVQSSSPGFSEQPPNIPDQKLDAAAAAIE
Ga0137362_101347843	3300012205	Vadose Zone Soil	MRVLMRPAAAIVLIAAGLLFVPAANAQVQSPSPGLSE
Ga0137376_104595292	3300012208	Vadose Zone Soil	MRVLMRPAAAILLLAAGVFVPPANAQVQSPSPGLSEQAPNISDQ
Ga0137378_102655281	3300012210	Vadose Zone Soil	MRVLMRPAAAILLLAAGVLLVPAANAQVQSPSPGLSEQAPN
Ga0137377_108481222	3300012211	Vadose Zone Soil	MRVLMRPAAAILLLAAGLLSVPAANAQVQSPSPGLSDPSPNIP
Ga0137377_114648042	3300012211	Vadose Zone Soil	MRVLMRPTAAALLIAVGLLSVPAANAQVQSPSPGLSNQSP
Ga0137377_118131631	3300012211	Vadose Zone Soil	MRALMRPAAAILLLAAGLLSVPAANAQVQSPSPGLSDPSPNIP
Ga0137366_111318742	3300012354	Vadose Zone Soil	MRVLMRPIATALLIAAGLLSAPAANTQAQSPSPGLSDPSPN
Ga0137395_100685183	3300012917	Vadose Zone Soil	MRALMRPAAAILLLAAGVLLAPAANAQVQSPPGLSEQPPNI
Ga0164303_100396081	3300012957	Soil	MRVLMWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSPDIS
Ga0182036_102847953	3300016270	Soil	MRVLMLPAAAAILLIGADLICGPAVNAQVQSPSPGATDQPSNIPDQKLDAAA
Ga0182033_118459831	3300016319	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQK
Ga0182035_115045401	3300016341	Soil	MRVVMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQKL
Ga0182034_106681101	3300016371	Soil	MRVLMLPAAAAILLIGADLLCAPAVNAQVQSPSPGATAQPSNIPDQKLDAAAAAVERV
Ga0182034_114095441	3300016371	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATDQPSNIPDQK
Ga0182034_114684901	3300016371	Soil	MRVLMLLAAAAILLIGADLLCAPAANAQVQSPSPGATDQPSNIPDQK
Ga0182040_112306001	3300016387	Soil	MRVLMLPAAAAILLIGADLLCAPAVNAQVQSPSPGATDQPSNIPDQKLDAAAAAIQR
Ga0182039_109575451	3300016422	Soil	MRVLMWPTATALLIAVGLLSVPAANAQVQSPSPGLSDQSSNISDQKLDAVATAIER
Ga0126371_116757762	3300021560	Tropical Forest Soil	MRVSMWPTAAALLIAVGLLSVSAANAQVQSPSPGLSDQSPDISD
Ga0126371_117900751	3300021560	Tropical Forest Soil	MRVLMLPAAAAILLIGADLICAPAVNAQVQSPSPGATDQPSNIPDQKLDAAAAA
Ga0193742_12004501	3300021976	Soil	MSQSMRLLMRPLAAAVLTAGWLLSVSAANAQAQSPSPGP
Ga0207646_118141171	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLMLLLRPAAAIGLIAAGLLFVPAANAQVQSPSPGLSGQPANIPD
Ga0257165_10912331	3300026507	Soil	MRILMRPAAAALLIAAGLLSVPAANAQVQSPSPGLSDQSPNIPDQKLD
Ga0209588_11149402	3300027671	Vadose Zone Soil	MRILMRPAAAALLIAAGLLSVPAANAQVQSPSPGLSDQSPNIPD
Ga0318516_100653883	3300031543	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPG
Ga0318542_104188401	3300031668	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQKLDAAAAAVQR
Ga0306918_107235581	3300031744	Soil	MRVLMLPAAAAILLIGADLICAPAVNAQVQSPSPGA
Ga0306918_115719721	3300031744	Soil	MRVLMLLAAAAILLIGADLLCAPAANAQVQSPSPGAT
Ga0318537_101329042	3300031763	Soil	MQIFTRCAAAMVLIAAGLLLVPAANAEVQSPSPGATDRPSNI
Ga0318554_107964541	3300031765	Soil	MLVVMLPAAAAILLIGADLLCAPAANAQVQSPSPGAT
Ga0318546_107191662	3300031771	Soil	MRVLVWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQS
Ga0318547_102752202	3300031781	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQAQSPSPGATDQPSNI
Ga0318503_100844552	3300031794	Soil	MRVLMLPAAAAILLIGADLLCAPAVNAQAQSPSPGAT
Ga0318503_101745751	3300031794	Soil	MRVLVWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSSNISDQK
Ga0318576_103580251	3300031796	Soil	MRVLMWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSSN
Ga0318550_100463403	3300031797	Soil	MQIFTRCAAAMVLIAAGLLLVPAANAEVQSPSPGATDQPSNIPDQKIDAAAAIQ
Ga0310917_100547751	3300031833	Soil	MLVVMLPAAAAILLIGADLLCAPAANAQVQSPSPGATA
Ga0310917_104724582	3300031833	Soil	MRVLMRPAAAILLLAAGVLLVPAANAQVQSPPGLSEQPPN
Ga0306919_102876531	3300031879	Soil	MLVVMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPD
Ga0318544_101568701	3300031880	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATA
Ga0318544_103285891	3300031880	Soil	MRVLMLPAAAAILLIGADLLCAPAVNAQVQSPSLGAADQPSNIPD
Ga0306925_100483671	3300031890	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQKL
Ga0306925_115614102	3300031890	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQKLDAAA
Ga0306925_119752611	3300031890	Soil	MRVLMLLAAAAILLIGADLLCAPAANAQVQSPSPGATDQ
Ga0318536_100516013	3300031893	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPRER
Ga0306923_105851013	3300031910	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIP
Ga0306921_106753182	3300031912	Soil	MRVLMWPSAAALLIAVGLLSVLAANAQVQSPSPGLSDQSPDFSDQKLDPVPGLSD
Ga0306921_119781712	3300031912	Soil	MQIFTRCAAAMVLIAAGLLLVPAANAEVQSPSPGATDQPSNIPDQK
Ga0310912_103214512	3300031941	Soil	MQIFTRCAAAMVLIAAGLLLVPAANAEVQSPSPGATDQPSNIPDQKIDAA
Ga0310912_108991352	3300031941	Soil	MLVVMLPAAAAILLIGADLLCAPAANAQVQSPSPGA
Ga0310910_110619751	3300031946	Soil	MRVLMLPAAAAILLIGADLLCAPAVNAQVQSPSLGAADQPSNI
Ga0310910_111199592	3300031946	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSN
Ga0318531_102943691	3300031981	Soil	MQIFTRCAAAMVLIAAGLLLVPAANAEVQSPSPGATDQPSNIPDQKIDAAAAAIQQ
Ga0306922_105663543	3300032001	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVRSPSPGATAQPSNIP
Ga0306922_106305101	3300032001	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQKLDAAAAAVQRV
Ga0318569_104883021	3300032010	Soil	MRVLMLPAVAAILLIGADLLCAPAANAQVQSPSPGATVQPSNIPDQKLNAAAAAVQRVTSLKK
Ga0318507_102765242	3300032025	Soil	MRVLVWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSPNISDQKLDA
Ga0310911_101280271	3300032035	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVRSPSPGATAQPSNIPDQKLDAAAAAVQ
Ga0310911_102774871	3300032035	Soil	MQIFTRCAAAMVLIAAGLLLVPAANAEVQSPSPGATDQP
Ga0318556_100145486	3300032043	Soil	MRVLMWPTAAALLIAVGLLSVPAANAQVQSPSPGADQSSN
Ga0318570_103160751	3300032054	Soil	MRVLVWPTAAALLIAVGLLSVPAANAQVQSPSPGLSDQSSNISDQKLDAVA
Ga0318533_107402262	3300032059	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVRSPSPGATAQPSNIPDQ
Ga0318514_106347921	3300032066	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQPSNIPDQ
Ga0318577_105378301	3300032091	Soil	MRVVMLPAAAAILLIGADLLCAPAANAQVQSPSPDATAQPSNIPDQKL
Ga0306920_1044358232	3300032261	Soil	MRVLMLPAAAAILLIGADLLCAPAANAQVQSPSPGATAQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100554

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences