Metagenome / Metatranscriptome Family F100484

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100484
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	43 residues
Representative Sequence	VAAFGTGAGRPLGGRGGSPGFRFTLYALLSVIAMYLDQRAHYL
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.63 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.431 % of family members)
Environment Ontology (ENVO)	Unclassified (24.510 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.80% β-sheet: 0.00% Coil/Unstructured: 66.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF06723	MreB_Mbl	93.14
PF02686	Glu-tRNAGln	2.94
PF01425	Amidase	1.96
PF13177	DNA_pol3_delta2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	93.14
COG0721	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	Translation, ribosomal structure and biogenesis [J]	2.94
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.33 %
Unclassified	root	N/A	11.76 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.84 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	7.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.84 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	7.84 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	4.90 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	7.84 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	4.90 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Tolypothrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae	7.84 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	4.90 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Tolypothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix	7.84 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	4.90 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Tolypothrix campylonemoides	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides	7.84 %
Symbiodinium pilosum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	4.90 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.76 %
Tolypothrix campylonemoides VB511288	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	7.84 %
Symbiodinium pilosum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	4.90 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10744781	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300001867\|JGI12627J18819_10048426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1775	Open in IMG/M
3300001867\|JGI12627J18819_10398636	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300002245\|JGIcombinedJ26739_101396356	Not Available	593	Open in IMG/M
3300002245\|JGIcombinedJ26739_101627152	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005184\|Ga0066671_10498780	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300005534\|Ga0070735_10612277	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300005538\|Ga0070731_10811932	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005541\|Ga0070733_10339286	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300005542\|Ga0070732_10999181	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005577\|Ga0068857_101641031	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300005764\|Ga0066903_104220932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	769	Open in IMG/M
3300005764\|Ga0066903_105547819	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300005764\|Ga0066903_109048973	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300006034\|Ga0066656_10241604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1159	Open in IMG/M
3300006954\|Ga0079219_11819857	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300009553\|Ga0105249_11707656	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300010048\|Ga0126373_12059857	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300010049\|Ga0123356_12179975	Not Available	692	Open in IMG/M
3300010359\|Ga0126376_10971941	All Organisms → cellular organisms → Bacteria → Proteobacteria	846	Open in IMG/M
3300010371\|Ga0134125_11828534	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300010373\|Ga0134128_12281893	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300010376\|Ga0126381_103378945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	629	Open in IMG/M
3300011120\|Ga0150983_12708526	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300011120\|Ga0150983_13229832	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300011120\|Ga0150983_13421176	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300013307\|Ga0157372_11287210	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300014658\|Ga0181519_10396529	Not Available	852	Open in IMG/M
3300015051\|Ga0137414_1003204	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300015054\|Ga0137420_1262756	Not Available	1953	Open in IMG/M
3300016404\|Ga0182037_10894445	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300016445\|Ga0182038_11841445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	547	Open in IMG/M
3300017994\|Ga0187822_10132718	Not Available	787	Open in IMG/M
3300017999\|Ga0187767_10168143	Not Available	670	Open in IMG/M
3300020070\|Ga0206356_11133889	Not Available	686	Open in IMG/M
3300020082\|Ga0206353_11141286	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300020170\|Ga0179594_10291605	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300021178\|Ga0210408_11213996	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300021405\|Ga0210387_11681690	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300021406\|Ga0210386_11268005	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300021444\|Ga0213878_10335645	Not Available	652	Open in IMG/M
3300021477\|Ga0210398_11501870	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300021478\|Ga0210402_10965022	Not Available	779	Open in IMG/M
3300021479\|Ga0210410_11698949	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300021560\|Ga0126371_10956641	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300023275\|Ga0247776_10362332	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300024288\|Ga0179589_10204009	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300025711\|Ga0207696_1029560	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	1672	Open in IMG/M
3300025898\|Ga0207692_10255277	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300025912\|Ga0207707_10024023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	5330	Open in IMG/M
3300025928\|Ga0207700_11684323	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300025928\|Ga0207700_11816441	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300026041\|Ga0207639_10226116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1619	Open in IMG/M
3300026142\|Ga0207698_11296651	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300026322\|Ga0209687_1178264	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300026322\|Ga0209687_1209603	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027070\|Ga0208365_1029695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	719	Open in IMG/M
3300027266\|Ga0209215_1033591	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300027546\|Ga0208984_1006332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2151	Open in IMG/M
3300027567\|Ga0209115_1097123	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300027590\|Ga0209116_1053470	Not Available	874	Open in IMG/M
3300027616\|Ga0209106_1144074	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300027867\|Ga0209167_10257546	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300027869\|Ga0209579_10636958	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300027889\|Ga0209380_10803330	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300027895\|Ga0209624_11067972	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300027986\|Ga0209168_10618786	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300030741\|Ga0265459_13625261	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300031122\|Ga0170822_15206971	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300031231\|Ga0170824_124594544	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300031474\|Ga0170818_101566450	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300031545\|Ga0318541_10539713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	652	Open in IMG/M
3300031668\|Ga0318542_10134065	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	1220	Open in IMG/M
3300031713\|Ga0318496_10405364	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300031715\|Ga0307476_10015887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4803	Open in IMG/M
3300031715\|Ga0307476_11298730	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031723\|Ga0318493_10596274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	615	Open in IMG/M
3300031769\|Ga0318526_10074850	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	1327	Open in IMG/M
3300031777\|Ga0318543_10549822	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031793\|Ga0318548_10042895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2038	Open in IMG/M
3300031793\|Ga0318548_10359535	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300031819\|Ga0318568_11029213	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300031823\|Ga0307478_10432082	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300031832\|Ga0318499_10260523	Not Available	672	Open in IMG/M
3300031859\|Ga0318527_10314283	Not Available	667	Open in IMG/M
3300031893\|Ga0318536_10542136	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300031941\|Ga0310912_10150070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1758	Open in IMG/M
3300031945\|Ga0310913_10654419	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031946\|Ga0310910_11392521	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300031959\|Ga0318530_10251627	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300032009\|Ga0318563_10514982	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300032043\|Ga0318556_10154421	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	1185	Open in IMG/M
3300032043\|Ga0318556_10582075	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300032054\|Ga0318570_10277031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	762	Open in IMG/M
3300032066\|Ga0318514_10118549	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	1355	Open in IMG/M
3300032067\|Ga0318524_10305622	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300032076\|Ga0306924_11943185	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300032174\|Ga0307470_11036473	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300032805\|Ga0335078_11278931	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300032892\|Ga0335081_11129110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	900	Open in IMG/M
3300032955\|Ga0335076_11279391	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300033805\|Ga0314864_0159837	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.14%
Host-Associated	Host-Associated	6.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.18%
Plants	Host-Associated → Plants	5.88%
Aquatic	Environmental → Aquatic	1.96%
Arthropoda	Host-Associated → Arthropoda	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.75%
Loam	Environmental → Terrestrial → Soil → Loam	22.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.71%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025711	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_107447812	3300001593	Forest Soil	VAAFGTGVGRPLGRGGSAGFRFTFFAILSVVAMYLDQRAH
JGI12627J18819_100484261	3300001867	Forest Soil	VTAFGTAAGRPLQGRGGSPGFRFFLYAVFAVVIMYLDQRARYLEHV
JGI12627J18819_103986362	3300001867	Forest Soil	VAAFGTGAGRPLGGRGGSPGFRFTLYALLSVIMMYLD
JGIcombinedJ26739_1013963562	3300002245	Forest Soil	VAAFGTVGRPLGRGGSPGFRFTLFAILSVVAMYLDQRQHYLERVRYVLGA
JGIcombinedJ26739_1016271521	3300002245	Forest Soil	MAFGTGASSARGGSPGFRFALYAILSIVIMFLDQRW
Ga0066671_104987802	3300005184	Soil	VAAFGTPAGRPWQGRGGSAGFRYTLYAAVAVVVMYLDQRQHYLEQV
Ga0070735_106122772	3300005534	Surface Soil	LAAFGTGARQLQGRGGSPGFRFTIYALLSIVIMFLDERSHWLENAR
Ga0070731_108119321	3300005538	Surface Soil	VAAFGTAAGRPLTGRGGSPGFRFTLYALLAVVVMYLDQRQHYL
Ga0070733_103392861	3300005541	Surface Soil	VAAFGTVPGRPLQGRGGSPGFRFTVYALLSVVGMYLDQR
Ga0070732_109991811	3300005542	Surface Soil	MAAFGTGASRQLSGRGSAPGFRFTIYAALSIVVMFMDKRGEYFERVHYV
Ga0068857_1016410312	3300005577	Corn Rhizosphere	VAAFGTGASSRSLQGRGGSAGFRFTLYAILSVVVMFLDQRQGW
Ga0066903_1042209321	3300005764	Tropical Forest Soil	VAAFGTGAGRPPSGRGGSPGFRFTLYALLSVILMYLDQRAHYLEQ
Ga0066903_1055478191	3300005764	Tropical Forest Soil	VAAFGTGAGRPLQGRGGSGFRFTLYALLAVVVMYFDQRGHYLEQVRYALQAAAYPI
Ga0066903_1090489732	3300005764	Tropical Forest Soil	VAAFGTGASRQLQGRGGSPGFRFTIYAVLSIVVMFLDERSHWLESARYVLQAAAY
Ga0066656_102416042	3300006034	Soil	VAAFGTAAGRPLQGRDGAAGFRFTVYAALAVVIMYLDQRQHYLERLRYVL
Ga0079219_118198572	3300006954	Agricultural Soil	MAFGTGASSARGGSPGFRFTVYATLSIVIMFLDQRGEYLEQ
Ga0105249_117076562	3300009553	Switchgrass Rhizosphere	MAFGTGASSARGGSPGFRFTLYAILSIVIMFLDQKGEYLE
Ga0126373_120598571	3300010048	Tropical Forest Soil	VAAFGTGAGRPLSGRGGSPGFRFTLFAVLSVVIMYLDQRGHYLERV
Ga0123356_121799751	3300010049	Termite Gut	VAAFGTGAPRPLPGRGGTGSPGFRFTLYALLSVVVMYLDQRQHYLEQLR
Ga0126376_109719411	3300010359	Tropical Forest Soil	VAAFGTAAGRPLTGRGGSPGFRFTLFALLAVVVMYLDQRQHYLEQVRY
Ga0134125_118285342	3300010371	Terrestrial Soil	VAAFGTGASRQLQGRGGSPGFRFTLYALLSIVVMFLDERSHWLENARYVLQA
Ga0134128_122818931	3300010373	Terrestrial Soil	VAAFGTGAGRPLSGRGGSPGFRFTLYALLSVILMYLDQRAHYLEQL
Ga0126381_1033789451	3300010376	Tropical Forest Soil	VAAFGTGAGRPLGGRGGSAGFRFTLYALLSVIMMYLDQR
Ga0150983_127085261	3300011120	Forest Soil	VTAFGTAAGRPLQGRGGSPGFRFTLYGAVAVVIMYLDQRAHYLE
Ga0150983_132298322	3300011120	Forest Soil	VAAFGTGAGRPSGRGGSPGFRFTLFAVLSVITMYLDQRQHYLEQVRYVLQAA
Ga0150983_134211761	3300011120	Forest Soil	VAAFGTAAGRPLGRGGSPGFRFTLYAAVAVVVMYLDQRQHYLEQLRYVLQ
Ga0157372_112872101	3300013307	Corn Rhizosphere	LAAFGTGARQLQGRGGSPGFRFFLYALLSIVVMFLDERSHWL
Ga0181519_103965291	3300014658	Bog	VAAFGTGAGRPLYGRGGSPGFKFTIYAVLSVVAMYLDQRQHYLEH
Ga0137414_10032042	3300015051	Vadose Zone Soil	MAFGTGASSARGGSPGFRFALYAILSIVIMFLDQKG
Ga0137420_12627561	3300015054	Vadose Zone Soil	VAAFGTAAGRPLQGRGGAAGFGFRFALYAALAVVVMYLDQRQHYLERVRYVLQA
Ga0182037_108944451	3300016404	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIVVYLDQRAHYLEQ
Ga0182038_118414451	3300016445	Soil	VAAFGTGAGRPLGGRGGSPGFRFTLYALLSVIMMYLDQRAHYLEQ
Ga0187822_101327182	3300017994	Freshwater Sediment	VAFGTAAGRPLQGRGGSPGFRFTLYAVLSVVVMYL
Ga0187767_101681431	3300017999	Tropical Peatland	VTAFGTAASRPLQGRGGSPGFRFTLYAVLAVVVMYLD
Ga0206356_111338892	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VAAFGTGSRSLQGRGGSAGFRFTLYAVLSVVVMFLDQR
Ga0206353_111412862	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VAAFGTGARQLQGRGGSPGFRFTLYALLSIVIMFLDERSHWLE
Ga0179594_102916052	3300020170	Vadose Zone Soil	VAAFGTPAGRPWQGRGGSAGLRFTLYAAVAVVVMYLDQRQHYLEQL
Ga0210408_112139961	3300021178	Soil	VAAFGTAASRPLQGRGGSSGFHFTLYATLAVVAMYLD
Ga0210387_116816901	3300021405	Soil	VAAFGTGGSRSVSRGPSPGFRFTLYAILSFVVMFLDQRHGWM
Ga0210386_112680051	3300021406	Soil	VAAFGTAAGRPLQGRGGSPGFRFTLYGAVAVVIMYLDQRAHYLEP
Ga0213878_103356451	3300021444	Bulk Soil	VAAFGTAGGRALGRGSPGFRFTLFALLSVIAMYLDQR
Ga0210398_115018702	3300021477	Soil	VAFGTPGSRSQVRGPSPGFRFTLYAFLSFVIMFLDQRHGW
Ga0210402_109650221	3300021478	Soil	MAFGTGASSARGGSPGFRFTIYAILSIVIMFLDQRGAYL
Ga0210410_116989492	3300021479	Soil	MAFGTGASSARGGSPGFRFAIYAILSIVIMFLDQRGSWLE
Ga0126371_109566411	3300021560	Tropical Forest Soil	VAAFGTGAGRPLGGRGGSAGFRFTLYALLSVIVMYLDQRAHYLEQV
Ga0247776_103623322	3300023275	Plant Litter	MAFGTGASSARGGSPGFRFTLYAIISIVIMFLDQK
Ga0179589_102040092	3300024288	Vadose Zone Soil	MAFGTGASSARGGSPGFQFTLYAILSVVIMFLDQK
Ga0207696_10295601	3300025711	Switchgrass Rhizosphere	MAFGTGASSARGGSPGFRFTLYAALSIIIMFLDQR
Ga0207692_102552771	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VAAFGTGASRHLQGRGGSPGFRFFLYALLSMVVMFLDQ
Ga0207707_100240231	3300025912	Corn Rhizosphere	VAAFGTGARQLQGRGGSPGFRFTLYALLSIVIMFLDERSHWLENARYF
Ga0207700_116843232	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VAFGTGAGRPLQGRGGSPGFRFTLYAVLSVVVMYLDQRQHYLE
Ga0207700_118164412	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VAAFGTGGSRSQVRGPSLGFRFTLYAILSMVVMFLDQ
Ga0207639_102261163	3300026041	Corn Rhizosphere	VAAFGTGARQLQGRGGSPGFRFTLYALLSIVIMFLDERSHWLENARYFLQAAAYP
Ga0207698_112966511	3300026142	Corn Rhizosphere	VAGFATGAGRPLQGRGGSPGFRFALYAILSIAFMVLDQRFDWLERAHSVMQA
Ga0209687_11782641	3300026322	Soil	VAAFGTAAGRPLQGRGGSPGFRFTLYAVLSIVVMFLD
Ga0209687_12096032	3300026322	Soil	VAAFGTPAGRPWQARGGSAGFRFTLYAAVAVVVMYLDQRQHY
Ga0208365_10296951	3300027070	Forest Soil	VAAFGTAAGRPLGRGGSPGLRFTLYAALAVVAMYLDQRQ
Ga0209215_10335912	3300027266	Forest Soil	VAAFGTGAGRPLVGRGGSPGFRFTLYALLSVIVMYLDQRAHYLEQVRYVL
Ga0208984_10063321	3300027546	Forest Soil	VAAFGTPAGRPWQGRGGSAGFRFTLYAAVAVVVMYLDQRQHYLEQLRY
Ga0209115_10971231	3300027567	Forest Soil	VAFGTPGSRSQVRGPSPGFRFTLYAFLSFVIMFLDQRHGWME
Ga0209116_10534702	3300027590	Forest Soil	VAAFGTGVGRPLGRGGSAGFRFTFFAILSVVAMYLD
Ga0209106_11440741	3300027616	Forest Soil	VAAFGTPAGRPWQGRGGSAGFRFTLYAAVAVVVMYLDQRQHYLE
Ga0209167_102575461	3300027867	Surface Soil	VAAFGTVPGRPLQGRGGSPGFRFTVYALLSVVAMYLDQRQ
Ga0209579_106369581	3300027869	Surface Soil	VAAFGTAAGRPLTGRGGSPGFRFTLYALLAVVVMYLDQRQH
Ga0209380_108033302	3300027889	Soil	VAAFGTGASRPLQRGGSGFRFTVYAVLAVVCMYFDQRGHYLEQVRYV
Ga0209624_110679721	3300027895	Forest Soil	VAAFGTVGRPLGRGGSPGFRFTLFAILSVVAMYLDQRQHYLER
Ga0209168_106187861	3300027986	Surface Soil	VAGFATGAGRPLEGRRGSPGFRFALYAIVSIAFMILDQR
Ga0265459_136252611	3300030741	Soil	VAAFGTGVGRPLGRGGSAGFRFTFFAILSVVAMYLDQRAHYLEQVRYVLL
Ga0170822_152069712	3300031122	Forest Soil	VAAFGTGGGRPLQARGGSAGFRFTLYAMLAVMVMYLDQR
Ga0170824_1245945441	3300031231	Forest Soil	VAAFGTGASRQLQGRGGSLGFRFTLYALLSMVVMFLDERSHWLESSRYVLQAA
Ga0170818_1015664501	3300031474	Forest Soil	VAAFGTGASRQLQGRGGSLGFRFTLYALLSMVVMF
Ga0318541_105397131	3300031545	Soil	VAAFGTGAGRPLSGRGGSPGFRFTLYALLSVIAMYLDQRAHY
Ga0318542_101340651	3300031668	Soil	VAAFGTGAGRPLGGRGGSAGFRFTLYALLSVIVMYLDQR
Ga0318496_104053642	3300031713	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIVMYLDQRAHYLE
Ga0307476_100158871	3300031715	Hardwood Forest Soil	MAFGTGATSGRGGSPGFRFTLYATVSIIIMFLDQRGEYLE
Ga0307476_112987301	3300031715	Hardwood Forest Soil	MAFGTGASSSRGGSPGFRFALYAILSIVIMFLDQRGNYLEQ
Ga0318493_105962741	3300031723	Soil	VAAFGTGAGRPLGGRGGSAGFRFTLYALLSVIMMY
Ga0318526_100748501	3300031769	Soil	VAAFGTGAGRPLGGRGGSAGFRFTLYALLSVIMMYLDQRAH
Ga0318543_105498221	3300031777	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIAMYLDQRA
Ga0318548_100428954	3300031793	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIAMYLDQRAHYLEQ
Ga0318548_103595352	3300031793	Soil	VAAFGTGAGRLAGRGGSPGFRFTLYALLSVIVMYLDQRAH
Ga0318568_110292131	3300031819	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIAMYLDQRAHY
Ga0307478_104320822	3300031823	Hardwood Forest Soil	VAAFGTAGRPLQGRGGSGFRFTLYALLAVLTMYFDQRGHYLEQVRYVLQAAAYPI
Ga0318499_102605232	3300031832	Soil	VAAFGTGAGRPLGGRGGSPGFRFTLYALLSVIMMYLDQRAHYLEQVR
Ga0318527_103142831	3300031859	Soil	VAAFGTGAGRLAGRGGSPGFRFTLYALLSVIVMYLDQRAHYLE
Ga0318536_105421361	3300031893	Soil	VAAFGTGAGRPLSGRGGSPGFRFTLFAVLSVVIMY
Ga0310912_101500701	3300031941	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIAMYLDQ
Ga0310913_106544192	3300031945	Soil	VAAFGTGAGRPLGGRGGSPGFRFTLYALLSVIAMYLDQRAHYL
Ga0310910_113925212	3300031946	Soil	VAAFGTGADRPLGGRSGSPGFRFTLYALLSVIVMYLDQRAHYLEQVRY
Ga0318530_102516272	3300031959	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIAMYLDQRAHYLEQVRYVL
Ga0318563_105149822	3300032009	Soil	VAAFGTGAGRPLGGRGGSAGFRFTLYALLSLIVMYLDQRAHYLEQV
Ga0318556_101544212	3300032043	Soil	VAAFGTGADRPLGGRGGSPGFRFTLYALLSVIAMY
Ga0318556_105820751	3300032043	Soil	VAAFGTGAGRPLTGRGGSPGFRFTLYALLSVIVMYLDQRAHY
Ga0318570_102770312	3300032054	Soil	VAAFGTGAGRPLSGRGGSPGFRFTLYALLSVIAMYLDQRAHYLEQVRY
Ga0318514_101185492	3300032066	Soil	VAAFGTGADRPLGGRSGSPGFRFTLYALLSVIVMYLDQRAHYLE
Ga0318524_103056222	3300032067	Soil	VAAFGTGAGRPLTGRGGSPGFRFTLYALLSVVAMYLDQRAHYLEQLRY
Ga0306924_119431851	3300032076	Soil	VAAFGTGADRPLGGRSGSPGFRFTLYALLSVIVMYLDQRAHYLEQVR
Ga0307470_110364731	3300032174	Hardwood Forest Soil	VAAFGTGASRPLYGRGGSGFRFTFYALLSVVAMYLDQRGHYLEQVRYVLQG
Ga0335078_112789311	3300032805	Soil	VAAFGTAAGRPLTGRGGSPGFRFTLYALLSVVVMYLDQRQHYLEQVRY
Ga0335081_111291101	3300032892	Soil	VAAFGTGAGRPLQGRGGSPGFRFTLYAVLSVVIMYLDQRQ
Ga0335076_112793911	3300032955	Soil	MAFGTGASSARGGSPGFRFTLYAIVSIVIMFLDQRGEY
Ga0314864_0159837_2_130	3300033805	Peatland	MAAFGTAAGRPLQGRGGSPGFRFTLYGVLAVAIMYLDQRAHYL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100484

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences