NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100454

Metagenome / Metatranscriptome Family F100454

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100454
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 41 residues
Representative Sequence MVFQLDKNTTIEGSLKVGANADVTYRQEKGANIAISVRVTP
Number of Associated Samples 84
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 12.90 %
% of genes near scaffold ends (potentially truncated) 72.55 %
% of genes from short scaffolds (< 2000 bps) 75.49 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (76.471 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(35.294 % of family members)
Environment Ontology (ENVO) Unclassified
(35.294 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.980 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 31.88%    Coil/Unstructured: 68.12%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF06718DUF1203 6.86
PF07366SnoaL 6.86
PF00196GerE 3.92
PF00072Response_reg 1.96
PF02163Peptidase_M50 1.96
PF00266Aminotran_5 1.96
PF00154RecA 1.96
PF09957VapB_antitoxin 0.98
PF13561adh_short_C2 0.98
PF03795YCII 0.98
PF08281Sigma70_r4_2 0.98
PF01475FUR 0.98
PF11154DUF2934 0.98
PF00589Phage_integrase 0.98
PF00180Iso_dh 0.98
PF01619Pro_dh 0.98
PF06348DUF1059 0.98
PF07731Cu-oxidase_2 0.98
PF01261AP_endonuc_2 0.98
PF13007LZ_Tnp_IS66 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0468RecA/RadA recombinaseReplication, recombination and repair [L] 1.96
COG0506Proline dehydrogenaseAmino acid transport and metabolism [E] 0.98
COG0735Fe2+ or Zn2+ uptake regulation protein Fur/ZurInorganic ion transport and metabolism [P] 0.98
COG2132Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)Cell cycle control, cell division, chromosome partitioning [D] 0.98
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms76.47 %
UnclassifiedrootN/A23.53 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004092|Ga0062389_101378165All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300004631|Ga0058899_10188567All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300005175|Ga0066673_10824765All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21530Open in IMG/M
3300005180|Ga0066685_10954976All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300005468|Ga0070707_101874706All Organisms → cellular organisms → Bacteria → Acidobacteria567Open in IMG/M
3300005554|Ga0066661_10260432All Organisms → cellular organisms → Bacteria → Acidobacteria1072Open in IMG/M
3300005555|Ga0066692_10032306All Organisms → cellular organisms → Bacteria2784Open in IMG/M
3300005586|Ga0066691_10540508All Organisms → cellular organisms → Bacteria → Acidobacteria695Open in IMG/M
3300005921|Ga0070766_10665800All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300005921|Ga0070766_11231684Not Available518Open in IMG/M
3300007265|Ga0099794_10106053All Organisms → cellular organisms → Bacteria → Acidobacteria1405Open in IMG/M
3300009038|Ga0099829_10041685All Organisms → cellular organisms → Bacteria → Acidobacteria3347Open in IMG/M
3300009090|Ga0099827_10901280All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium766Open in IMG/M
3300009137|Ga0066709_100019588All Organisms → cellular organisms → Bacteria6735Open in IMG/M
3300009137|Ga0066709_104285435Not Available520Open in IMG/M
3300009143|Ga0099792_10919833All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300009143|Ga0099792_11276101All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300009792|Ga0126374_10549313Not Available843Open in IMG/M
3300010065|Ga0127435_143439All Organisms → cellular organisms → Bacteria → Acidobacteria702Open in IMG/M
3300010109|Ga0127497_1106049Not Available518Open in IMG/M
3300010122|Ga0127488_1007535All Organisms → cellular organisms → Bacteria → Acidobacteria535Open in IMG/M
3300010303|Ga0134082_10434993All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300010359|Ga0126376_12951190Not Available525Open in IMG/M
3300010376|Ga0126381_102518276All Organisms → cellular organisms → Bacteria → Acidobacteria737Open in IMG/M
3300010376|Ga0126381_103662544Not Available602Open in IMG/M
3300010398|Ga0126383_11205232All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium847Open in IMG/M
3300011120|Ga0150983_10482701All Organisms → cellular organisms → Bacteria1561Open in IMG/M
3300011120|Ga0150983_11818833Not Available513Open in IMG/M
3300011120|Ga0150983_16242753Not Available511Open in IMG/M
3300011269|Ga0137392_10056690All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2968Open in IMG/M
3300011269|Ga0137392_11549154Not Available521Open in IMG/M
3300011270|Ga0137391_10195968All Organisms → cellular organisms → Bacteria → Acidobacteria1758Open in IMG/M
3300012096|Ga0137389_11296568All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium622Open in IMG/M
3300012189|Ga0137388_11165622All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium708Open in IMG/M
3300012198|Ga0137364_11425491All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
3300012200|Ga0137382_10013154All Organisms → cellular organisms → Bacteria → Acidobacteria4506Open in IMG/M
3300012200|Ga0137382_10630996All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium766Open in IMG/M
3300012202|Ga0137363_10048502All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3032Open in IMG/M
3300012203|Ga0137399_11797381All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300012205|Ga0137362_10757102All Organisms → cellular organisms → Bacteria → Acidobacteria833Open in IMG/M
3300012206|Ga0137380_10167009All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2005Open in IMG/M
3300012211|Ga0137377_10716935All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium934Open in IMG/M
3300012285|Ga0137370_10085354All Organisms → cellular organisms → Bacteria1758Open in IMG/M
3300012349|Ga0137387_10202132All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1427Open in IMG/M
3300012356|Ga0137371_11204648All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300012362|Ga0137361_10740137All Organisms → cellular organisms → Bacteria → Acidobacteria897Open in IMG/M
3300012362|Ga0137361_10871622All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium817Open in IMG/M
3300012683|Ga0137398_10272634All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1132Open in IMG/M
3300012971|Ga0126369_10263320All Organisms → cellular organisms → Bacteria1704Open in IMG/M
3300012977|Ga0134087_10808839All Organisms → cellular organisms → Bacteria → Acidobacteria508Open in IMG/M
3300015241|Ga0137418_10228214All Organisms → cellular organisms → Bacteria → Acidobacteria1593Open in IMG/M
3300015241|Ga0137418_11094879All Organisms → cellular organisms → Bacteria → Acidobacteria568Open in IMG/M
3300018433|Ga0066667_11197007All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium661Open in IMG/M
3300019789|Ga0137408_1364751Not Available1038Open in IMG/M
3300020582|Ga0210395_10000564All Organisms → cellular organisms → Bacteria28718Open in IMG/M
3300021168|Ga0210406_10051680All Organisms → cellular organisms → Bacteria → Acidobacteria3595Open in IMG/M
3300021168|Ga0210406_10183126All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1744Open in IMG/M
3300021168|Ga0210406_10687166All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium790Open in IMG/M
3300021432|Ga0210384_10053442All Organisms → cellular organisms → Bacteria → Acidobacteria3661Open in IMG/M
3300021474|Ga0210390_10284466All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300021560|Ga0126371_12094297All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium682Open in IMG/M
3300021560|Ga0126371_13567451Not Available525Open in IMG/M
3300022709|Ga0222756_1012602All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium992Open in IMG/M
3300024219|Ga0247665_1004633All Organisms → cellular organisms → Bacteria → Acidobacteria1444Open in IMG/M
3300024271|Ga0224564_1044513All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium858Open in IMG/M
3300024287|Ga0247690_1008291All Organisms → cellular organisms → Bacteria → Acidobacteria1201Open in IMG/M
3300026323|Ga0209472_1077146All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1363Open in IMG/M
3300026481|Ga0257155_1044403All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium686Open in IMG/M
3300026524|Ga0209690_1252627All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300026555|Ga0179593_1049969All Organisms → cellular organisms → Bacteria → Acidobacteria2651Open in IMG/M
3300026555|Ga0179593_1152197All Organisms → cellular organisms → Bacteria → Acidobacteria2036Open in IMG/M
3300027725|Ga0209178_1222144All Organisms → cellular organisms → Bacteria → Acidobacteria675Open in IMG/M
3300027842|Ga0209580_10082623Not Available1538Open in IMG/M
3300027882|Ga0209590_10660960All Organisms → cellular organisms → Bacteria → Acidobacteria670Open in IMG/M
3300027884|Ga0209275_10024108All Organisms → cellular organisms → Bacteria2750Open in IMG/M
3300027884|Ga0209275_10428226Not Available749Open in IMG/M
3300028536|Ga0137415_10405343All Organisms → cellular organisms → Bacteria1168Open in IMG/M
3300030743|Ga0265461_13572295Not Available527Open in IMG/M
3300031057|Ga0170834_102885959All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1021Open in IMG/M
3300031546|Ga0318538_10100180All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1495Open in IMG/M
3300031590|Ga0307483_1031911All Organisms → cellular organisms → Bacteria → Acidobacteria557Open in IMG/M
3300031590|Ga0307483_1033250All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300031708|Ga0310686_118522110All Organisms → cellular organisms → Bacteria → Acidobacteria3541Open in IMG/M
3300031754|Ga0307475_10981422All Organisms → cellular organisms → Bacteria → Acidobacteria665Open in IMG/M
3300031771|Ga0318546_11232844All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis525Open in IMG/M
3300031941|Ga0310912_10954770All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis658Open in IMG/M
3300032076|Ga0306924_10005275All Organisms → cellular organisms → Bacteria → Acidobacteria12716Open in IMG/M
3300032094|Ga0318540_10088763All Organisms → cellular organisms → Bacteria → Acidobacteria1443Open in IMG/M
3300032205|Ga0307472_100612519All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium963Open in IMG/M
3300032261|Ga0306920_100023616All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium8637Open in IMG/M
3300032515|Ga0348332_11519508All Organisms → cellular organisms → Bacteria → Acidobacteria643Open in IMG/M
3300032805|Ga0335078_11257140All Organisms → cellular organisms → Bacteria → Acidobacteria849Open in IMG/M
3300033289|Ga0310914_10517132Not Available1079Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil35.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil16.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.86%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.90%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.96%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.98%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.98%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004631Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010065Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010109Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010122Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024219Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06EnvironmentalOpen in IMG/M
3300024271Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5EnvironmentalOpen in IMG/M
3300024287Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026481Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-AEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300030743Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assemblyEnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031590Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062389_10137816513300004092Bog Forest SoilSFTIDKNTTVDGKLKVGSSADVTYRTDNGANVAISVHVTP*
Ga0058899_1018856713300004631Forest SoilTMSFAIDKNTTIDGKLKVGSSADVTYRQDNGANIAVSVHVTP*
Ga0066673_1082476523300005175SoilASPKTMTFLIDKNTAIEGSLKVDANADVTYRQEKGANVAISVRVAP*
Ga0066685_1095497613300005180SoilPGTPKTMTFLLDKNTTIEGSLRVGANADVTYRQEKGSNVAISVHVAS*
Ga0070707_10187470613300005468Corn, Switchgrass And Miscanthus RhizospherePKTMSFTIDKNTTVEGSLKVGSNADVTYREDNGVNVAISVRVTS*
Ga0066661_1026043213300005554SoilKNTTIDGSLKVGASADVTYRQEKGSNVAISVRVTS*
Ga0066661_1051817713300005554SoilKSMTFQIDKNTTVDGKLKVGASADVTYREESGNLVAISVRVS*
Ga0066692_1003230643300005555SoilQIDKNTAIEGSLKVGASADVTYRQEKGANIAISVHVTP*
Ga0066691_1054050813300005586SoilNTPKTMTFMVDKNTTIDGSLKVGANADVTYRQEKGSNVAISVRVAP*
Ga0070766_1066580013300005921SoilFTIDKNTTVDGKLKVGSSADVTYRQDNGANIAISVHVTP*
Ga0070766_1123168413300005921SoilMSFTIDKNTTVDGKLKVGSSADVTYRQDNGANVAISVHVTP*
Ga0099794_1010605313300007265Vadose Zone SoilIDKNTTVDGKLQVGANADVTYREEEGKFVAINVRVS*
Ga0099829_1004168533300009038Vadose Zone SoilMTFLLDKNTTIEGSLRVGANAEVTYRQEKGANVAISVHVTP*
Ga0099827_1090128013300009090Vadose Zone SoilTMSFKIDKSTTIDGSLKVGANADVTYRQEKSENIAISVRVTP*
Ga0066709_10001958873300009137Grasslands SoilMKFQIDKNTGIEGSLKVGASADVTYRQEKGANIAISVHVTP*
Ga0066709_10428543513300009137Grasslands SoilLLDKNTTTEGSLRVSATADVTYRQEKRANMAISVRVTQ*
Ga0099792_1091983313300009143Vadose Zone SoilDPASPKTMSFMLDKNTTIEGSLKVGATADVTYRQEKGSNVAISVRVTP*
Ga0099792_1127610113300009143Vadose Zone SoilKNTTIEGSLKVGASADVTYRQEKGANIAISVHVTP*
Ga0126374_1054931323300009792Tropical Forest SoilMTFDIDANTTIDGKLKVGANADVTYRQEGAKNIAISVRVS*
Ga0127435_14343913300010065Grasslands SoilMTFLIDKNTAIEGSLKVDASADVTYRQEKGANVAISVRVAP*
Ga0127497_110604913300010109Grasslands SoilIDKNTTVDGKLKVGANADVTYRQESGNNIAISVHVVQ*
Ga0127488_100753523300010122Grasslands SoilMTFLIDKNTAIEGSLKVDAIADVTYRQEKGANVAISVRVAP*
Ga0134082_1043499313300010303Grasslands SoilFLIDKNTAIEGSLKVDANADVTYRQEKGANVAISVRVAP*
Ga0126376_1295119013300010359Tropical Forest SoilMTFQIDKNTTVDGQLQVGANADVTYRQDHGTNIAISVHVSS*
Ga0126381_10251827613300010376Tropical Forest SoilMVFLIDKNTTIDGKLRVGANADVTYREENGANIAINVRAGT
Ga0126381_10366254413300010376Tropical Forest SoilMTFLVDNNTTIDGKLQVGANADVTYREEGGSNIAISVRVTP*
Ga0126383_1120523213300010398Tropical Forest SoilLIDKNTTVDGQLQVGANADVTYRTEGSNNIAISVHVS*
Ga0150983_1048270133300011120Forest SoilSSTMSFTIDKNTTVDGKLKVGSSADVTYRQDNGANVAISVHVTP*
Ga0150983_1181883313300011120Forest SoilQPSASSTMSFTIDKNTTVDGKLKVGSSADVTYRQDNGANVAISVHVTP*
Ga0150983_1624275323300011120Forest SoilMAFTIDKNTTVDGKLKVGSPADVHYRQDNGANVAIS
Ga0137392_1005669013300011269Vadose Zone SoilKSTTIDGSLKVGANADVTYRQEKGENIAISVRVTP*
Ga0137392_1154915413300011269Vadose Zone SoilDKNTTIEGSLRVGANADVTYRQEKSTNVAISVHVAP*
Ga0137391_1019596823300011270Vadose Zone SoilMTFLLDKNTTIEGSLRVGADAEVTYRQEKGANVAISVHVTP*
Ga0137389_1129656813300012096Vadose Zone SoilKTMAFTIDKNTTVEGILKVGFNADVTYRQDNGVNVAISVHVTS*
Ga0137388_1116562223300012189Vadose Zone SoilKIDKNTTIEGSLRVGANADVTYRQEKGANIAISVRVTP*
Ga0137364_1142549113300012198Vadose Zone SoilKNTAIEGSLKVDASADVTYRQEKGANVAISVRVAP*
Ga0137382_1001315453300012200Vadose Zone SoilMKFQIDKNTAIEGSLKVGASADVTYRQEKGANIAISVHVTP*
Ga0137382_1063099623300012200Vadose Zone SoilPKTMTFLIDKNTAIEGSLKVDASADVTYRQEKGANVAISVRVAP*
Ga0137363_1004850263300012202Vadose Zone SoilMSFKLDKTTTIDGSLKVGANADVTYRQEKGENIAISVRVTP*
Ga0137399_1179738113300012203Vadose Zone SoilMLDKNTTIEGSLKVGATADVTYRQEKGSNVAISVRVTP*
Ga0137362_1075710213300012205Vadose Zone SoilVLQDSASPKTMVFQLDKNTAIEGSLKVGASADVTYRQEKGTNIAISVRVTP*
Ga0137380_1016700913300012206Vadose Zone SoilMVFQLDKNTTIEGSLKVGANADVTYRQEKGANIAISVRVTP*
Ga0137377_1071693513300012211Vadose Zone SoilDPASPKTMTFLIDKNTAIEGSLKVDASADVTYRQEKGANVAISVRVAP*
Ga0137370_1008535413300012285Vadose Zone SoilQQDPSTPKTMTFMIDKNTTIDGSLKVGASADVTYRQEKGSNVAISVRVTS*
Ga0137387_1020213243300012349Vadose Zone SoilLQDPPTPKTMAFQINKNTTIEGSLRVGANADVTYRQEKGANIAISVRVAP*
Ga0137371_1120464813300012356Vadose Zone SoilMTFLLDKNTTIEGSLRVGANADVTYRQEKGANVAISVHVAS*
Ga0137360_1027265633300012361Vadose Zone SoilFQIDKNTTVDGKLQVGANADVTYREEEGKFVAINVRVS*
Ga0137361_1074013713300012362Vadose Zone SoilMTFLLDKNTTIEGSLRVGANDEVTYRQEKGANVAISVHVTP*
Ga0137361_1087162213300012362Vadose Zone SoilQSAAKTMNFLVDKNTTIDGKLKVGATADVTYREDSGQNVAISVHIAP*
Ga0137358_1051902613300012582Vadose Zone SoilQRSMTFQIDKNTTVDGKLQVGANADVTYREEEGKFVAINVRVS*
Ga0137398_1027263433300012683Vadose Zone SoilSPKTMVFQLDKNTAIEGSLKVGASADVTYRQEKGTNIAISVRVTP*
Ga0137359_1004457313300012923Vadose Zone SoilSMTFQIDKNTTVDGKLQVGANADVTYREEEGKFVAINVRVS*
Ga0137404_1016378533300012929Vadose Zone SoilMTFQIDKNTTVDGKLQVGAKAYVTYREESGKWVAISVRCS*
Ga0126369_1026332033300012971Tropical Forest SoilAPSSMTFAIDKNTTVDGKLKVGSTADVTYRQDNGANVAISIHVS*
Ga0134087_1080883913300012977Grasslands SoilFLIDKNTAIEGSLKVDANADVTYREEKGANVAISVRVAP*
Ga0137418_1022821443300015241Vadose Zone SoilFQIDKNTTVEGQLQVGANADVTYRQDNGSNIAISVRVS*
Ga0137418_1109487913300015241Vadose Zone SoilKNTTIEGSLKVGVNADVTYRQEKGANIAISVRVTP*
Ga0066667_1119700713300018433Grasslands SoilSPATPKSMKFQIDKNTAIERSLKVGASADVTYRQEKGANIAISVHVTP
Ga0137408_136475123300019789Vadose Zone SoilMTFQIDKNTTVDGQLQVGANADVTYRQESGNNIAISVHVS
Ga0179592_1052460223300020199Vadose Zone SoilRSMTFQIDKNTTVDGKLQVGANADVTYREEEGKFVAINVRVS
Ga0210395_10000564263300020582SoilMSFTIDKNTTVDGKLKVGSSADVTYRQDNGANVAISVHVTP
Ga0210406_1005168053300021168SoilKNTTVDGKLKVGSSADVTYRQDNGANVAISVHVTP
Ga0210406_1018312613300021168SoilASSTMSFTIDKNTTVDGKLKVGSSADVTYRQDNGANVAISVHVTP
Ga0210406_1068716623300021168SoilEPASPKTMNFMLDKNTTIQGSLKVGATADVIYRQEKGANLAISVRVTP
Ga0210388_1067005213300021181SoilDKNTTVDGKLQVGANADVTYREDGGKLVAISVRVS
Ga0210384_1005344233300021432SoilDKNTTIDGKLKVGSNADVTYRQDNGNNVAVSVTVTP
Ga0210390_1028446623300021474SoilIDKNTTIDGKLKVGSSADVTYRQDNGANIAVSVHVTP
Ga0126371_1209429713300021560Tropical Forest SoilMTFLVDNNTTIDGKIQVGANADVTYREEGGNNIAISVRVAP
Ga0126371_1356745113300021560Tropical Forest SoilFQIDKNTTVDGQLQVGANADVTYRQDKGTNIAISVHVVS
Ga0222756_101260223300022709SoilMSFTIDKNTTVDGKLKVGSSADVTYRQDNGANIAISVHVTP
Ga0247665_100463333300024219SoilMIDKNTTVEGSLKVGSNADVTYRQDNGANIAISVRVTP
Ga0224564_104451323300024271SoilFTIDKNTTMDGKLKVGSSAEVTYRQDNGTNIAISVHVTP
Ga0247690_100829133300024287SoilPQPRPSKTMSFMIDKNTTVEGSLKVGSNADVTYRQDNGANIAISVRVTP
Ga0209472_107714633300026323SoilPKTMKFQIDKNTAIEGSLKVGASADVTYRQEKGANIAISVHVTP
Ga0257155_104440313300026481SoilFMLDKNTTIEGSLKVGATADVTYRQEKGSNVAISVRVTP
Ga0209690_125262713300026524SoilKTMTFMIDKNTTIDGSLKVGASADVTYRQEKGSNVAISVRVTS
Ga0179593_104996953300026555Vadose Zone SoilKTMSFQIDKNTTVEGQLQVGANADVTYRQDNGSNIAISVRVS
Ga0179593_115219763300026555Vadose Zone SoilMTFQIDKNTTVDGKLQVGANADVTYREEEGKFVAIN
Ga0209178_122214423300027725Agricultural SoilMSFMIDQNTTIEGKLKVGSSADVTYRQANGNNVAVSVRVTP
Ga0209580_1008262313300027842Surface SoilLIDKNTTVEGKLKVDAMADVTYRSENGQNVAISVRVTP
Ga0209579_1021711033300027869Surface SoilQTPSSASTMSFTIDKNTTVDGKLKVGSTADVTYRTDNGANVAISVHVTP
Ga0209590_1066096023300027882Vadose Zone SoilTMSFKIDKSTTIDGSLKVGANADVTYRQEKSENIAISVRVTP
Ga0209275_1002410813300027884SoilPTPSAATTMAFTIDKNTTVDGKLKVGSSADVTYRSDNGSNVAISVHVTP
Ga0209275_1042822613300027884SoilIDQNTTVEGKLKVGANADVTYRQDNGANVAISVHVAP
Ga0137415_1040534333300028536Vadose Zone SoilKTMTFQLDKNTTIEGSLKVDAIADVTYRQEKGANVAISVRVAP
Ga0265461_1357229513300030743SoilMSFAIDKNTTIDGKLKVGSSADVTYRQDNGANIAVSVHVTP
Ga0170834_10288595913300031057Forest SoilIDKNTTVDGKLQVGANADVTYREDGGKLMAISVRVS
Ga0318538_1010018023300031546SoilMKFVMDKNTTVDGKLQVGANADVTYREDSGKNLAISVRVTS
Ga0307483_103191113300031590Hardwood Forest SoilPKTMNFTVDQNTTIDGKLQVGASADVTYREDSGKNVAISVRVTP
Ga0307483_103325013300031590Hardwood Forest SoilQIDKNTTIDGKLKVGASADVTYREDNGQNVAISVHVTP
Ga0310686_11852211013300031708SoilMAFSIDKNTTVDGKLKVGSSADVTYRQDNGANVAISVHVTP
Ga0307475_1098142213300031754Hardwood Forest SoilQDAASPKTMAFQLDKNTTIEGSLRVGASADVTYRQEKGANVAISVHVTP
Ga0318546_1123284413300031771SoilMTFTIDKNTTIDGKLKVGASADVTYRQEGGNNIAISVRVGS
Ga0310912_1095477023300031941SoilDKNTTIDGKLKVGASADVTYRQEGGNNIAISVRVGS
Ga0306924_1000527513300032076SoilPEPTTPTNCSKTMKFVMDKNTTVDGKLQVGANADVTYREDSGKNLAISVRVTS
Ga0318540_1008876323300032094SoilMKFVMDKNTTVDGKLQVGANADVTYREDSGKNLAISVHVAP
Ga0307472_10061251913300032205Hardwood Forest SoilDKNTAIEGSLKVDANADVTYRQEKGANVAISVRVAP
Ga0307472_10227308213300032205Hardwood Forest SoilTMTFEIDKNTTVDGKMQVGAKADVTYREENGKLVAINVRVS
Ga0306920_100023616133300032261SoilMKFVIDKNTTVDGKLQVGASADVTYREDSGKNFAISVHVAP
Ga0348332_1151950823300032515Plant LitterPTSATTMSFVIDKNTTVEGKLKVGSAADVTYRQDNGANVAISVRVAP
Ga0335078_1125714023300032805SoilTMTFLINQNTTVDGKLAVGANADVTYRQDNGNNVAISVRVAK
Ga0310914_1051713223300033289SoilTIDKNTTIDGKLKVGASADVTYRQEGGNNIAISVRVGS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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