Metagenome / Metatranscriptome Family F100058

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100058
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	42 residues
Representative Sequence	MLLSFAYLAFSAVLRLLVRRRRSEFAKDVELLVLRHQLM
Number of Associated Samples	74
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.23 %
% of genes near scaffold ends (potentially truncated)	85.44 %
% of genes from short scaffolds (< 2000 bps)	95.15 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.107 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.010 % of family members)
Environment Ontology (ENVO)	Unclassified (41.748 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.311 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.73% β-sheet: 0.00% Coil/Unstructured: 46.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF03551	PadR	1.94
PF00583	Acetyltransf_1	1.94
PF00665	rve	1.94
PF13683	rve_3	1.94
PF13649	Methyltransf_25	1.94
PF00072	Response_reg	0.97
PF13088	BNR_2	0.97
PF13458	Peripla_BP_6	0.97
PF02567	PhzC-PhzF	0.97
PF00534	Glycos_transf_1	0.97
PF00078	RVT_1	0.97
PF13276	HTH_21	0.97
PF13462	Thioredoxin_4	0.97
PF04024	PspC	0.97
PF01223	Endonuclease_NS	0.97
PF04134	DCC1-like	0.97
PF05671	GETHR	0.97
PF02371	Transposase_20	0.97
PF05147	LANC_like	0.97
PF03176	MMPL	0.97
PF02142	MGS	0.97
PF09922	DUF2154	0.97
PF08125	Mannitol_dh_C	0.97
PF00532	Peripla_BP_1	0.97
PF13508	Acetyltransf_7	0.97
PF10282	Lactonase	0.97
PF00484	Pro_CA	0.97
PF12850	Metallophos_2	0.97
PF08241	Methyltransf_11	0.97
PF07730	HisKA_3	0.97
PF07690	MFS_1	0.97
PF01544	CorA	0.97
PF06778	Chlor_dismutase	0.97
PF01810	LysE	0.97
PF07920	DUF1684	0.97
PF13490	zf-HC2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.94
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.94
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.94
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.94
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.94
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.94
COG0246	Mannitol-1-phosphate/altronate dehydrogenases	Carbohydrate transport and metabolism [G]	0.97
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.97
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.97
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.97
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.97
COG1864	DNA/RNA endonuclease G, NUC1	Nucleotide transport and metabolism [F]	0.97
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.97
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.97
COG3253	Coproheme decarboxylase/chlorite dismutase	Coenzyme transport and metabolism [H]	0.97
COG3358	Uncharacterized conserved protein, DUF1684 family	Function unknown [S]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.97
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.97
COG4403	Lantibiotic modifying enzyme	Defense mechanisms [V]	0.97
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.97
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	46.60 %
Unclassified	root	N/A	36.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40.78 %
Unclassified	root	N/A	36.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.04 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.91 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.97 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	16.50 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	4.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.91 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.50 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	4.85 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.94 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.97 %
Bogoriellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae	0.97 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.50 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	2.91 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.94 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	0.97 %
Georgenia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia	0.97 %
Salinispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora	0.97 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.50 %
Micromonospora purpureochromogenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora purpureochromogenes	1.94 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.94 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.97 %
Georgenia satyanarayanai	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia satyanarayanai	0.97 %
Salinispora tropica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora tropica	0.97 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig920111	Not Available	514	Open in IMG/M
2170459012\|GOYVCMS01B6753	Not Available	502	Open in IMG/M
2170459018\|G1P06HT01CAUM3	Not Available	585	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101604591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1054	Open in IMG/M
3300000955\|JGI1027J12803_109184662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1550	Open in IMG/M
3300000956\|JGI10216J12902_101763577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1007	Open in IMG/M
3300000956\|JGI10216J12902_102618111	Not Available	664	Open in IMG/M
3300000956\|JGI10216J12902_102788004	Not Available	945	Open in IMG/M
3300000956\|JGI10216J12902_102908042	Not Available	772	Open in IMG/M
3300000956\|JGI10216J12902_117508310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300004463\|Ga0063356_102135052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	851	Open in IMG/M
3300005177\|Ga0066690_10586103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	745	Open in IMG/M
3300005179\|Ga0066684_10173154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1383	Open in IMG/M
3300005187\|Ga0066675_11089831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300005468\|Ga0070707_100501454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1175	Open in IMG/M
3300005552\|Ga0066701_10977470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300005553\|Ga0066695_10765744	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300005598\|Ga0066706_10173684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1639	Open in IMG/M
3300006046\|Ga0066652_101869571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	540	Open in IMG/M
3300009012\|Ga0066710_101222333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1164	Open in IMG/M
3300009012\|Ga0066710_103598706	Not Available	584	Open in IMG/M
3300009137\|Ga0066709_100186202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2709	Open in IMG/M
3300009137\|Ga0066709_101059769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1190	Open in IMG/M
3300009137\|Ga0066709_102596086	Not Available	679	Open in IMG/M
3300009137\|Ga0066709_103729787	Not Available	553	Open in IMG/M
3300010036\|Ga0126305_10211834	Not Available	1232	Open in IMG/M
3300010038\|Ga0126315_10799623	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300010041\|Ga0126312_11382990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300010042\|Ga0126314_11273449	Not Available	550	Open in IMG/M
3300010045\|Ga0126311_11908776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300010047\|Ga0126382_12126617	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010166\|Ga0126306_11561397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora tropica	549	Open in IMG/M
3300010323\|Ga0134086_10310349	Not Available	614	Open in IMG/M
3300010323\|Ga0134086_10353334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300011269\|Ga0137392_10456709	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300011992\|Ga0120146_1081030	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012022\|Ga0120191_10028007	All Organisms → cellular organisms → Bacteria → Terrabacteria group	857	Open in IMG/M
3300012092\|Ga0136621_1230671	All Organisms → cellular organisms → Bacteria → Terrabacteria group	727	Open in IMG/M
3300012096\|Ga0137389_10514919	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300012189\|Ga0137388_10535740	Not Available	1088	Open in IMG/M
3300012189\|Ga0137388_11696494	Not Available	566	Open in IMG/M
3300012198\|Ga0137364_10651685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	794	Open in IMG/M
3300012201\|Ga0137365_10070029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2646	Open in IMG/M
3300012201\|Ga0137365_10395089	Not Available	1020	Open in IMG/M
3300012204\|Ga0137374_10205664	All Organisms → cellular organisms → Bacteria	1691	Open in IMG/M
3300012204\|Ga0137374_10883125	Not Available	658	Open in IMG/M
3300012206\|Ga0137380_10203616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1794	Open in IMG/M
3300012206\|Ga0137380_11019823	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300012207\|Ga0137381_10446959	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300012208\|Ga0137376_11506441	Not Available	564	Open in IMG/M
3300012209\|Ga0137379_11267039	Not Available	644	Open in IMG/M
3300012209\|Ga0137379_11573713	Not Available	557	Open in IMG/M
3300012209\|Ga0137379_11604236	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012210\|Ga0137378_11661405	Not Available	546	Open in IMG/M
3300012353\|Ga0137367_10453389	Not Available	906	Open in IMG/M
3300012353\|Ga0137367_10701699	All Organisms → cellular organisms → Bacteria → Terrabacteria group	705	Open in IMG/M
3300012354\|Ga0137366_10224869	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300012354\|Ga0137366_11105633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300012355\|Ga0137369_10231413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1409	Open in IMG/M
3300012355\|Ga0137369_10448652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	921	Open in IMG/M
3300012356\|Ga0137371_11364007	Not Available	522	Open in IMG/M
3300012358\|Ga0137368_10332556	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300012360\|Ga0137375_10007171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13246	Open in IMG/M
3300012360\|Ga0137375_10409381	Not Available	1182	Open in IMG/M
3300012360\|Ga0137375_10776231	Not Available	774	Open in IMG/M
3300012360\|Ga0137375_10889858	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300012360\|Ga0137375_11473342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300012532\|Ga0137373_11084163	Not Available	574	Open in IMG/M
3300012532\|Ga0137373_11099796	Not Available	568	Open in IMG/M
3300012930\|Ga0137407_12042926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora purpureochromogenes	547	Open in IMG/M
3300012948\|Ga0126375_12038880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora purpureochromogenes	508	Open in IMG/M
3300012957\|Ga0164303_11105211	Not Available	573	Open in IMG/M
3300012960\|Ga0164301_11106282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300012971\|Ga0126369_11928713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	679	Open in IMG/M
3300013764\|Ga0120111_1102312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	675	Open in IMG/M
3300013770\|Ga0120123_1014932	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300013772\|Ga0120158_10312185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	755	Open in IMG/M
3300013772\|Ga0120158_10343333	Not Available	705	Open in IMG/M
3300014823\|Ga0120170_1071713	Not Available	732	Open in IMG/M
3300014827\|Ga0120171_1057714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1138	Open in IMG/M
3300015371\|Ga0132258_13900424	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1014	Open in IMG/M
3300015373\|Ga0132257_103248317	Not Available	592	Open in IMG/M
3300017657\|Ga0134074_1276852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300018071\|Ga0184618_10367190	Not Available	612	Open in IMG/M
3300018482\|Ga0066669_10243106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1416	Open in IMG/M
3300018482\|Ga0066669_10429852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1128	Open in IMG/M
3300018482\|Ga0066669_12395684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia satyanarayanai	506	Open in IMG/M
3300019255\|Ga0184643_1340189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875	Open in IMG/M
3300019887\|Ga0193729_1000018	All Organisms → cellular organisms → Bacteria	79607	Open in IMG/M
3300021073\|Ga0210378_10307158	Not Available	595	Open in IMG/M
3300022756\|Ga0222622_10228271	Not Available	1250	Open in IMG/M
3300026309\|Ga0209055_1139123	Not Available	870	Open in IMG/M
3300026326\|Ga0209801_1106799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1208	Open in IMG/M
3300026523\|Ga0209808_1195956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	680	Open in IMG/M
3300027882\|Ga0209590_10837323	Not Available	583	Open in IMG/M
3300028778\|Ga0307288_10073658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1211	Open in IMG/M
3300028878\|Ga0307278_10006371	All Organisms → cellular organisms → Bacteria	5623	Open in IMG/M
3300028878\|Ga0307278_10062748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1678	Open in IMG/M
3300028878\|Ga0307278_10125025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1155	Open in IMG/M
3300028878\|Ga0307278_10501848	Not Available	530	Open in IMG/M
3300028884\|Ga0307308_10180732	Not Available	1010	Open in IMG/M
3300031681\|Ga0318572_10435930	All Organisms → cellular organisms → Bacteria → Terrabacteria group	780	Open in IMG/M
3300031740\|Ga0307468_102463937	Not Available	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.12%
Host-Associated	Host-Associated	2.91%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.26%
Aquatic	Environmental → Aquatic	4.85%
Plants	Host-Associated → Plants	2.91%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.26%
Freshwater	Environmental → Aquatic → Freshwater	2.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.91%
Sediment	Environmental → Aquatic → Sediment	1.94%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.29%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Ice	Environmental → Aquatic → Freshwater → Ice	0.97%
Loam	Environmental → Terrestrial → Soil → Loam	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.97%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.37%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.18%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.80%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_15335670	2124908045	Soil	MFLSFAYLAFCAVLKLLVGRRRTEFAKDVELMVLRHQLM
N56_00450750	2170459012	Grass Soil	MLLSFAYLGFSALLRLLVGRRRSAFVKDVELLVLRHQLAV
2MG_02767660	2170459018	Switchgrass, Maize And Mischanthus Litter	MLLSFAYLAFSAILRLLVGRSAKHVGEGVELLVLRHQLAVLVGN
INPhiseqgaiiFebDRAFT_1016045912	3300000364	Soil	MLLPFAYLAFAAVLKLLVRGRRAEFAKDVELVLLRHQLSVLARQQQ
JGI1027J12803_1091846621	3300000955	Soil	MLLSFAYLAFSAVLRMLVRDRRSEFAKGVELLVLRHQLVVLR
JGI10216J12902_1017635771	3300000956	Soil	MLISFAYLAFSAVLRLVVSGRSSEFAKDVELLVLRHQLVVLGRRQRHP
JGI10216J12902_1026181112	3300000956	Soil	MLSFAYLAFAAVLKLLARSRRAEFTKDVELVLLRHQLSVLARQHQS
JGI10216J12902_1027880042	3300000956	Soil	MLLPFAYLAFAAVLRLLVRGRRAEFAKDVELVLLRHQL
JGI10216J12902_1029080423	3300000956	Soil	MILSFGYLAFSALLRLVTRRPRTERAKDVELGGLIHQYHRAAA*
JGI10216J12902_1175083102	3300000956	Soil	MLLSFAYLAFSAVLRLLIRHRSSEFAKDVELLVWRHQ
Ga0063356_1021350521	3300004463	Arabidopsis Thaliana Rhizosphere	MLPSFAYLAFSAVLQLLLGRRRSEFAKDVELLVLRHQLAVLGRQEMRAPL
Ga0066690_105861031	3300005177	Soil	MLLSFVYLAFSALLQLLMGSRRSEFAKDVELLVLRHQLLVLRRQ
Ga0066684_101731541	3300005179	Soil	MLLSFAYLAFAAVLRLLVRGRRAEFAKDVELVLLRHQLSVLARQH*
Ga0066675_110898311	3300005187	Soil	MLLSFAYLTFAAFLRLLVRGRRAEFAKDVELVLLRHQLSVLTRQHRPHRLRPADRAFFAA
Ga0070707_1005014541	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLLSFAYFAFGAILRLLVGGRRGEFDKDIELIVLRHQLTVLRRRGERSK
Ga0066701_109774701	3300005552	Soil	MLLSFAYLAFVAVLRLLVRGRRAEFSKDVELVLLRHQLARQ
Ga0066695_107657441	3300005553	Soil	MLVSFAHLAFSAMLRLLVGRRRSSFANEIELLVLR
Ga0066706_101736841	3300005598	Soil	MLLSFAYLAFSAVLRLLVGRRGSEFAKDVELLVLR
Ga0066652_1018695712	3300006046	Soil	MLLSFAYLAFAAILRPLVRGRRAEFAKDVELVLLRHQLSVLARQQ
Ga0066710_1012223331	3300009012	Grasslands Soil	MLLSFAYLAFSALLKLLVGRRRNEFANDVELMVLRHQLDVLGRQAARPSLRPA
Ga0066710_1035987062	3300009012	Grasslands Soil	MLLSFAYLAFSAVLRLLVRDRRSEFAKDLELLVLRHQLAVLG
Ga0066709_1001862023	3300009137	Grasslands Soil	MLLSFAYLAFSAVLRLLVGRRGSEFAKDVELLVLRH
Ga0066709_1010597691	3300009137	Grasslands Soil	MLLSFAYLAFSALLKLLVRSRRTEFAKDVELVLLRHQLS
Ga0066709_1025960861	3300009137	Grasslands Soil	MLLSFAYLAFASLLRLLAARRRDEFAKDGHVSSV*
Ga0066709_1037297871	3300009137	Grasslands Soil	MLLSFAYFAFSAVLRLVVGRRRSEFAKDLELLVLRHQLIVLGR
Ga0126305_102118341	3300010036	Serpentine Soil	MLLSFAYLAFSAVLRLLVRNRQTELAKDVELLVLRHQLAVLTR
Ga0126315_107996232	3300010038	Serpentine Soil	MFLSFAYLAFSPVLRLLVGGRSSEFAKDVELLVLRHQLAVL
Ga0126312_113829901	3300010041	Serpentine Soil	MLLSFAYLAFSAVLRLLVRGRRSEFAKDLELLVLRHQLAVL
Ga0126314_112734491	3300010042	Serpentine Soil	MLLSFAYLMFSAVLSLLVRRRQPEFATDLELIVLRHQLSVLSRRHQRR
Ga0126311_119087762	3300010045	Serpentine Soil	DEHRPMFLSFAYLAFLAVLRLLVRGRRREFAKDLELLV*
Ga0126382_121266172	3300010047	Tropical Forest Soil	MLLSFAYLAFSTLLRLLVQGRRSEFAKDVELLVLRH*
Ga0126306_115613971	3300010166	Serpentine Soil	MLLSFAYLAFAAFLRLLFRGRRAEFANDVELVLLRHQLSVLTRQHRPHRLRPADRAFI
Ga0134086_103103491	3300010323	Grasslands Soil	MLLSFAYLAFSALLRLLVGGRRSELAKEIELLVLRHQLV
Ga0134086_103533341	3300010323	Grasslands Soil	MLLSFAYFAFGAILRLLVGGRRGEFDKDIELIVLRHQLTVLRRRGERPKLK
Ga0137392_104567091	3300011269	Vadose Zone Soil	MLLSFAYFAFGAILRLLVGGRRGEFDKDIELIVLRHQL
Ga0120146_10810301	3300011992	Permafrost	MLLSFAYLAFSAVLRLLVRPRSSELAKDVELLVLLDRQQ*
Ga0120191_100280071	3300012022	Terrestrial	MLLSFAYLAFAAVLRLLVRGRRAEFAKDVALVLLPHHLSVLAPP
Ga0136621_12306712	3300012092	Polar Desert Sand	MLLSFAYLAFSTLLRLLVRGRRSEFTKDVELLVCARGVH*
Ga0137389_105149192	3300012096	Vadose Zone Soil	MLLSFAYLAFAAVLRLLVRGRRPEFAKDVELVLLRHQLSILTRQQQ
Ga0137388_105357403	3300012189	Vadose Zone Soil	MLLSFVYRAFSAVLRLLVRGRRDEFARDGELLGLRHQLVVLG*
Ga0137388_116964942	3300012189	Vadose Zone Soil	MLLSFAYFAFGAILRLLVGGRRGEFDKDIELIVLRHQLTVLR
Ga0137364_106516853	3300012198	Vadose Zone Soil	FAYLAFSALLRLLLSGPRSGLAKDLELLVLRHQLAVLGRQERTSS*
Ga0137365_100700291	3300012201	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVRRRSSEFAKDVELLVLRHQLVVLSRQQPR
Ga0137365_103950891	3300012201	Vadose Zone Soil	VFFSFAYLAFSAVLRLLIGGRRSEFAKDVELLLLRHQ
Ga0137374_102056641	3300012204	Vadose Zone Soil	MLISFAYLAFSALLRLLVRSRQSEFAKDVELVLLRHQLSVLARD*
Ga0137374_108831251	3300012204	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVRRRRSEFAKDVELLVLRHQLM
Ga0137380_102036161	3300012206	Vadose Zone Soil	MLLSFAYLAFSALLRLLVGGRRSEFAKDIELVVL*
Ga0137380_110198232	3300012206	Vadose Zone Soil	MLLSSVYLAFSVVLRLLVGNRRGELAKDVERLVLRHQQ
Ga0137381_104469591	3300012207	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVRGRRSEFAKDVELLVLRH
Ga0137376_115064412	3300012208	Vadose Zone Soil	MLLSFVYLAFSALLQLLMGGRRSEFTKDVELLVLRHQLLLLRRQQ
Ga0137379_112670392	3300012209	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVSGRSSEVAKDVELLVLRHQLVVLG
Ga0137379_115737131	3300012209	Vadose Zone Soil	MFLSFVYLAFSVVLRLLVTDRRSEFDKVVELLVLRHQLAVL
Ga0137379_116042362	3300012209	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVRTRSSELVKDVELLVLRHQLVVLNRHERR
Ga0137378_116614052	3300012210	Vadose Zone Soil	MLLSFAYLAFSALLRLLVSGRGSEFAKDVELLVLRHQLLVLSRQDGLR*
Ga0137367_104533891	3300012353	Vadose Zone Soil	MLLTFAYLAFAAVLRLLVRGRRAEFAKDVELVLLRH
Ga0137367_107016991	3300012353	Vadose Zone Soil	MVFSFAYLAFSAVLRLLVSGRSSEFAKDVELLVLRHQ
Ga0137366_102248691	3300012354	Vadose Zone Soil	MVLSLVYLVFVALLRLVAGGRRSELAKDVELLVLRHELAVL
Ga0137366_111056332	3300012354	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVRGRRSEFAKDLELLVLRHQLAVLG
Ga0137369_102314131	3300012355	Vadose Zone Soil	MFLSFAYLAFSAVLKLLLGRRRGEFAKDVELKVLRHQLVVRGRQACRP
Ga0137369_104486521	3300012355	Vadose Zone Soil	MLLSFAYLAFSALLRLLVSGRSSEFAKDVELLVLRHQLVV
Ga0137371_113640072	3300012356	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVRDRRSEFAKDLELLVLR
Ga0137368_103325561	3300012358	Vadose Zone Soil	MLLSFAYLAFSTVLRLLVRGRRSEFTKDLELLVLRHQ
Ga0137375_1000717116	3300012360	Vadose Zone Soil	MLLSFAYLAFSAVLRLLVTNRRSEFAKDVELLVLRVGLQTRRGF
Ga0137375_104093813	3300012360	Vadose Zone Soil	MCLSFAYLAFSAVLKLLVGRRRNEFAKEVELLVLRH
Ga0137375_107762311	3300012360	Vadose Zone Soil	AYLAFSAVLRLLVGGRRSEFSKDVELLVLRHQLVVLGRQRGA*
Ga0137375_108898581	3300012360	Vadose Zone Soil	MLLSFAYLAFSAVLRLLAGRWRSEFAKDVEPLVLRHQLVVLA*
Ga0137375_114733421	3300012360	Vadose Zone Soil	MLLSFAYLAFSTLLRLLVRGRRSEFAKDVELLVLRH
Ga0137373_110841631	3300012532	Vadose Zone Soil	MLLSFAYLAFSALLRLLVRRRRSEFAKDVELLVLRH
Ga0137373_110997961	3300012532	Vadose Zone Soil	MVLSFAYRAFSAVLRLLVRRRSSEFAKDVELLVVRHQLVVLSRQQPRPS
Ga0137407_120429261	3300012930	Vadose Zone Soil	MLLSFAYLAFAAFLRLLARDRRAEFAKDVELVLLRHQLSVLARQHQRPRLRPA
Ga0126375_120388801	3300012948	Tropical Forest Soil	MLLSFASLAFSAVLRLLVGGRSSEFAKDVELLVLRHQLAVLGRQRRRPS
Ga0164303_111052112	3300012957	Soil	MFLSFAYLAFCAVLKLLVGRRRNEFAKDVELMVLRHQLVVL
Ga0164301_111062822	3300012960	Soil	MLFSFAYLALSAVLRLLVQSRGSELAKDVELLVLRHQLVVLR*
Ga0126369_119287132	3300012971	Tropical Forest Soil	MFFSFLYLAFSGVLRLVAGGRRSEFAKDVELLVLRHQLAVLR
Ga0120111_11023121	3300013764	Permafrost	MLLSVAYLAFSAVLRLLVGRRSSELAKDVELLVVRHQLVVLGR*
Ga0120123_10149324	3300013770	Permafrost	MLLSFAYLAFSAVLRLLVRSRQTELAKDVELLVLRHQLSVN*
Ga0120158_103121853	3300013772	Permafrost	MFLSFAYLAFSAVLRLLVRSWSSELAKDVELLVSRHQ
Ga0120158_103433332	3300013772	Permafrost	MLLSFAYLAFSAVLRLLVRTRSSELAKDVELLVLRHQL
Ga0120170_10717133	3300014823	Permafrost	MLFSFAYLAFSAVLRLLVRGRRAEFANDVEVVLLRHQLSVLA
Ga0120171_10577141	3300014827	Permafrost	MLLSFAYLAFSAVLRLLVGRRRSEVAKDVQLLVWRHQLA
Ga0132258_139004242	3300015371	Arabidopsis Rhizosphere	MLLSFAYLAFSAVLRLLVSGRSSEFAKDVELLVLRHQL
Ga0132257_1032483171	3300015373	Arabidopsis Rhizosphere	VYLAFSTLLRCSCEDRRSEFAKDLELLVLRHQLHVLGRSYLWRVV*
Ga0134074_12768522	3300017657	Grasslands Soil	VGLAFLAVLRLLVGGRSSEFAKDVELPVLRHQLVVLER
Ga0184618_103671902	3300018071	Groundwater Sediment	MLLSFAYLAFSALLRLLLSGPRSELAKGLELLVLRHQLAVLGRQERTSS
Ga0066669_102431062	3300018482	Grasslands Soil	MLLSLAYLAFSALLRLLIRDRRTEFAKDVELMLLRHQLSVMTRQRQR
Ga0066669_104298522	3300018482	Grasslands Soil	MLLSFAYVAFVAVLRLLVCGRRTAFAKDVELVLLRH
Ga0066669_123956841	3300018482	Grasslands Soil	MLLSFAYLAFSALLRLLVSRRGSELAKDVGLLVLRHQLIVLRRQQR
Ga0184643_13401891	3300019255	Groundwater Sediment	MLLSFAYLAFSAVLRLLVGRRGSEFAKDVELLVLRHQLAVLGRQA
Ga0193729_100001827	3300019887	Soil	MLLSFVYLAFSAVLRLLVRGRRSEFAKDVELLVRR
Ga0210378_103071583	3300021073	Groundwater Sediment	MLLSFAYLAFAAVLRLLVRDRRTEFAKDVELMLLRHQLSVLARQHQRPRLRP
Ga0222622_102282712	3300022756	Groundwater Sediment	MLLSFAYLGFSTVLRLLVRGRRAEFAKDVELVLLRHQL
Ga0209055_11391232	3300026309	Soil	MLLSFAYLAFSAVLRLLVRRQRSEFAKDVELLVLRHQLVVFSRQQ
Ga0209801_11067992	3300026326	Soil	VRGPLGLRASFAYFAFSAVLRLVVGRRRSEFAKDLELLVLRHQLI
Ga0209808_11959562	3300026523	Soil	MLLSFAYLAFSAVLRLLVRRQRSEVAKDVELLVLRHQLVVL
Ga0209590_108373232	3300027882	Vadose Zone Soil	MLLSFAYLAFAAVLRLLVRGRRPEFAKDVELVLLRHQLSVL
Ga0307288_100736582	3300028778	Soil	MLLSFAYLAFSAVLRLLVGRRGSEFAKDVELLVLRHQLAVL
Ga0307278_100063711	3300028878	Soil	MLLSFAYLAFSAVLRLLVRSRSSEFAKDVELLVLRHQ
Ga0307278_100627482	3300028878	Soil	MLLSFAYLAFAAVLRLLVRGRRAEFAKDVELVLLRHQLSVLARQ
Ga0307278_101250251	3300028878	Soil	LLWKHRRMLLSFAYLAFSAVLRLLAGRWRSEFAKDVELLV
Ga0307278_105018482	3300028878	Soil	MLLSFAYLAFSAVLRLLVRGRRAEFANDVEVVLLRHQLSVLARQHQRPKLRPADS
Ga0307308_101807321	3300028884	Soil	MSQFRWVWEDRSMLLSFAYLAFAAVLRLLVRGRRPEFAKDVE
Ga0318572_104359302	3300031681	Soil	MFFSFLYLAFSGVLRLRAGGRRSEFAKSVELLVLRHQLT
Ga0307468_1024639372	3300031740	Hardwood Forest Soil	MLLSFVYLAFAALLRLLVGCRRSEFAKDVELLVLRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100058

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences