NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F100056

Metagenome Family F100056

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100056
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 51 residues
Representative Sequence INGSSAYQATIAGGVIAWTATITGNGGVAITADPTLRKWPPAVHLTQ
Number of Associated Samples 87
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 4.85 %
% of genes from short scaffolds (< 2000 bps) 3.88 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (95.146 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(25.243 % of family members)
Environment Ontology (ENVO) Unclassified
(35.922 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.340 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 26.67%    Coil/Unstructured: 73.33%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00437T2SSE 93.20
PF00248Aldo_ket_red 0.97
PF07883Cupin_2 0.97
PF00441Acyl-CoA_dh_1 0.97
PF00132Hexapep 0.97
PF00266Aminotran_5 0.97
PF00082Peptidase_S8 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.97


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A95.15 %
All OrganismsrootAll Organisms4.85 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004479|Ga0062595_100350424All Organisms → cellular organisms → Bacteria1028Open in IMG/M
3300007076|Ga0075435_100167064All Organisms → cellular organisms → Bacteria1855Open in IMG/M
3300014829|Ga0120104_1050097All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300027875|Ga0209283_10033483All Organisms → cellular organisms → Bacteria3216Open in IMG/M
3300027882|Ga0209590_10836927All Organisms → cellular organisms → Bacteria583Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil25.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil21.36%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil10.68%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost8.74%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.91%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.94%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.94%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.97%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.97%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.97%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.97%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.97%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001333Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001334Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001359Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-35cm)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001535Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001538Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006864Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193EnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012008Permafrost microbial communities from Nunavut, Canada - A39_80cm_12MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013772Permafrost microbial communities from Nunavut, Canada - A10_80_0.25MEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014829Permafrost microbial communities from Nunavut, Canada - A10_35cm_6MEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019999Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1EnvironmentalOpen in IMG/M
3300020018Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2EnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026273Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
A21PFW6_114781823300001333PermafrostSQYLATIAGGVISYTATIRGNGGVSISVDPSLRTWPSAVRLTQ*
A2165W6_117355723300001334PermafrostYLSTIAGGVIAWTATLNGNGSVSIVGDPSLGTWPPAVHLTQ*
A3035W6_108940813300001359PermafrostINGSSAYQATIAGGVIAWTATITGNGGVAITADPTLRKWPPAVHLTQ*
A3PFW1_1065689113300001535PermafrostVFYLPGAGMTIAGNSSYFATIAGGLISWTATIKGSGGVSITADHSLEFPGAVQLVQ*
A10PFW1_1018207113300001538PermafrostGGVIAWTATLNGNGSVSIVGDPSLGTWPPAVHLTQ*
A10PFW1_1173569213300001538PermafrostYYAPAADVAITGNSQYLATIAGGVISYTATIRGNGGVSISVDPSLRTWPSAVRLTQ*
JGI25389J43894_108137313300002916Grasslands SoilIVGNSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ*
Ga0062595_10035042413300004479SoilGHGITSLTGIFYTPAASMTIIGSSSYLATIAGGVIAWSATVKGNGGVSIMADPTLRTWPSAVRLTQ*
Ga0066395_1067602013300004633Tropical Forest SoilSLIGVFYMPAASVTINGNSAYQATIAGGVVAWTATVTGTGDVAITADPTLRSWPPAVRLTQ*
Ga0066672_1046383913300005167SoilYQATIAGGVVAWTAAITGTGGVAITADPTLPTFPSTVRLIQ*
Ga0066677_1042736313300005171SoilLGIFYLPAASITITGSSGYLASIAGGLIAYTATINGNGSVSIVGDPSLRTWPPSVRLTQ*
Ga0066677_1046105913300005171SoilQATIAGGVIAWTATITGNGNLAIIADASLRAWPSAVRLIQ*
Ga0066683_1023668613300005172SoilAGHGVTSLLGIFYMPAASVTITGSSGYLSTIAGGVICWTATINGNGSVSIVGDPSLGTWPPAVHLTQ*
Ga0066676_1015549723300005186SoilPAANVTIVGNSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ*
Ga0070714_10024852833300005435Agricultural SoilSLIGIFYVPAANVTIIGNSSYLATIAGGVIAWTASVKGNGGVSISADPTLRTWPPSVNLTQ*
Ga0070705_10042827213300005440Corn, Switchgrass And Miscanthus RhizosphereTIVGSSSYLATIAGGLISWTATIKGNGGVSIMADPTLRTFPSAVRLIQ*
Ga0066687_1022255413300005454SoilPAATVTINGGSVYQATIAGGVIAWTATITGNGNLAILADPSLRAWPSAVRLIQ*
Ga0070706_10055345313300005467Corn, Switchgrass And Miscanthus RhizosphereLIGVFYMPAASVTINGNSAYQATIAGGVIAWIASVVGTGNVAITADPTLRKWPPAVNLTQ
Ga0070706_10126609113300005467Corn, Switchgrass And Miscanthus RhizosphereASVTINGNSAYQATIAGGVIAWTATIIGNGTVAITADPTLRSWPSTVRLVQ*
Ga0070707_10116611123300005468Corn, Switchgrass And Miscanthus RhizosphereQATIAGGVVAWTAAIIGTGNVAITADPTLRTWPPSVNLTQ*
Ga0070697_10131826313300005536Corn, Switchgrass And Miscanthus RhizosphereVAGHGVTSMLGIFYLPAASITITGGSGYLATIAGGLIAWTATINGNGSVSIVGDPSLMTWPPSVHLTQ*
Ga0066692_1090454213300005555SoilGGSQYQATIAGGVIAWTATITGNGNLAIIADASLRAWPSAVRLIQ*
Ga0066699_1019442023300005561SoilSNTYQATIAGGVIAWTATITGAGGVAITADPTLRTWPSAVRLTQ*
Ga0066699_1037411723300005561SoilATIAGGVIAWTATITGNGNLAILADPSLRAWPSAVRLIQ*
Ga0066708_1077097123300005576SoilATVTINGGSQYQATIAGGVIAWTATITGNGNLAILADPSLRAWPSAVRLIQ*
Ga0066706_1000382013300005598SoilIAGGVIAWTATITGNGNLAIIADASLRAWPSAVRLIQ*
Ga0066706_1023573713300005598SoilIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ*
Ga0066706_1072544713300005598SoilGGVIAWTASIIGTGNVAITADPTLRTWPPSVHLTQ*
Ga0066696_1003654753300006032SoilAGGVIAWTATITGNGNLAILADPSLRAWPSAVRLIQ*
Ga0066696_1079335713300006032SoilATIAGGVIAWTATIKGNGGVSILADPTLRTWPPSVTLTQ*
Ga0079220_1086068823300006806Agricultural SoilVTINGNSAYQATIAGGVIAWTATIIGNGTVAITADPTLRSWPSTVRLVQ*
Ga0066797_124090113300006864SoilLLGIFYMPAADVTITGSSGYLSTIAGGVIAWTVTINGNGSVSITGDPNLGSWPPAVHLTQ
Ga0075424_10162489213300006904Populus RhizosphereTIIGSSSYLATIAGGVIAWSATVKGNGGVSIMADPTLRTWPSAVRLTQ*
Ga0075435_10016706413300007076Populus RhizosphereHGITSLVGIFYMPAADVTIIGNSSYLATIAGGVISWTATIKGSGGVSIMADPTLRTFPSAVRLVQ*
Ga0099793_1036320713300007258Vadose Zone SoilNTCANTIAGHGVTSLLGIFYLPAASVTITGSSGYMATIAGGVIAWTATINGNGSVSIVGDPSLLTWPPSVHLTQ*
Ga0099794_1053246623300007265Vadose Zone SoilGSVIAWTASAIGTGNVAILADPTLRTWPPAVNLTQ*
Ga0066710_10332755513300009012Grasslands SoilIFYTPAASVTIIGSSNYLATIAGGVIAWSATVKGNGGVSIMADPTLRTWPSAVRLTQ
Ga0066710_10436712013300009012Grasslands SoilLIGIFYLPAASVTIIGSSNYLATVAGGVIAWTATVKGNGGVSIMADPTLRTWPSAVRLTQ
Ga0066793_1026224923300009029Prmafrost SoilVTSLLGIFYMPAADVTITGSSGYLSTIAGGVIAWPVTINGNGSVSITGDPNLGSWPPAVHLTQ*
Ga0099829_1160011623300009038Vadose Zone SoilLIGIFYMPAAGVTINGNSAYRATIAGGVIAWTAGVIGTGNVAITADPTLRTWPPAVNLTQ
Ga0099830_1018772723300009088Vadose Zone SoilIGIFYMPAAGVTINGNSAYRATIAGGVIAWTAGVIGTGNVAITADPTLRTWPPAVNLTQ*
Ga0099828_1107991023300009089Vadose Zone SoilVDGHGVTSFLGIFYLPAASITITGSSGYVASIAGGLIAYTATINGNGSVSIVGDPSLRTWPPGVHLTQ*
Ga0066709_10324392713300009137Grasslands SoilVPAANVTIVGNSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ*
Ga0134109_1041584013300010320Grasslands SoilSLIGIFYVPAANVTIVGNSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ*
Ga0126370_1265213413300010358Tropical Forest SoilVTINGNSAYQATIAGGVVAWTATVTGTGDVAITADPTLRSWPPAVRLTQ*
Ga0137392_1003689713300011269Vadose Zone SoilIFYMPAAAATINGNSAYQATIAGGVIAWTDRVIGTGNVAITADPTLRTWPPSVSLTQ*
Ga0120174_108378823300012008PermafrostMTIAGNSSYFATIAGGLISWTATIKGSGGVSITADHSLEFPGAVQLVQ*
Ga0137389_1132649113300012096Vadose Zone SoilGSSGYLASIAGGLIAYTATINGNGSVSIVGDPSLRTWPPSVRLTQ*
Ga0137389_1171615413300012096Vadose Zone SoilPAAGVTINGNSAYRATIAGGVIAWIAAVIGTGNVAITADPTLRTWPPAVNLTQ*
Ga0137383_1037846213300012199Vadose Zone SoilNVQINGSNSYQATIAGGVIAWTATITGNGAVSITADPTLRAFPSAVRLIQ*
Ga0137363_1168178913300012202Vadose Zone SoilTSLIGIFYVPAASVTIVGSSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPSAVRLTQ*
Ga0137380_1068629213300012206Vadose Zone SoilGGNTYRATIAGGVIAWTVTITGNGGVSISADPTLRKWPPTVHLTQ*
Ga0137379_1064904313300012209Vadose Zone SoilVTINGNSAYRATIAGGVIAWTAGVIGTGNVAITADPTLRTWPPAVNLTQ*
Ga0137377_1060098213300012211Vadose Zone SoilSLLGIFYMPAASVTITGSSGYLSTIAGGVICWTATINGNGSVSIVGDPSLGTWPPAVHLTQ*
Ga0137385_1045262813300012359Vadose Zone SoilIGSSNYLATIAGGVIAWSATVKGNGGVSIMADPTLRTWPSAVRLTQ*
Ga0137360_1059010023300012361Vadose Zone SoilGIFYLPAASITITGSSGYLASIAGGLIAYTATINGNGSVSIVGDPSLRTWPPSVRLTQ*
Ga0137390_1176425623300012363Vadose Zone SoilNGNSAYQATIAGGVIAWTASVIGTGNVAIIADPTLRTWPPAVNLTQ*
Ga0137394_1034862823300012922Vadose Zone SoilRATIAGGLVAWTATVLGSENLAITADPSLRAWPSTVRLTQ*
Ga0137419_1052580113300012925Vadose Zone SoilSSGYMATIAGGVIAWTATINGNGSVSIVGDPSLLTFPPSVHLTQ*
Ga0120158_1032630713300013772PermafrostNVTITGSSGYLSTIAGGVIAWTVTINGNGSVSITGDPNLGTWPPAVHLTQ*
Ga0134078_1046205523300014157Grasslands SoilGITSLIGIIYTPAADVTIIGSSSYLATIAGGVISWTATVKGNGGVSIMADPTLRTFPSAVRLIQ*
Ga0134079_1073572023300014166Grasslands SoilGGVVAWTAAITGTGGVAITADPTLPTFPSTVRLIQ*
Ga0120104_105009723300014829PermafrostPEQTPPPNTISNSIAGHGVTSLLGIFYMPAADVTITGSSGYLSTIAGGVIAWTVTINGNGSVSITGDPNLGTWPPAVHLTQ*
Ga0137412_1081207623300015242Vadose Zone SoilIFYLPAASITITGSSGYLATIAGGVIAWTATINGNGSVSIVGDPSLMTWPPSVHLTQ*
Ga0134069_104127713300017654Grasslands SoilTYQATIAGGVVAWTAAITGTGGVAITADPTLPTFPSTVRLIQ
Ga0066667_1124345213300018433Grasslands SoilVPAASVTIIGSSSYLATIAGGVIAWAATVKGNGGVSIMADPTLRTWPSAVHLTQ
Ga0066662_1024089833300018468Grasslands SoilGITSLIGIFYVPAASVTIIGSSSYLATIAGGVIAWSATVKGNGGVSIMADPTLRTWPSAVHLTQ
Ga0066662_1262261913300018468Grasslands SoilINGTSSYQATIAGGVIAWTATIQGNENLAIKADASLRAWPSTVRLTQ
Ga0066669_1209656923300018482Grasslands SoilSVTMIGSSNYLAPIAGGVIAWTATVKGNGGVSIMADPTLRTWPSAVRLTQ
Ga0193718_102744013300019999SoilMPAASVTITGSSGYLSTIAGGVIAWTATINGNGSVSITGDPSLGSWPSAVHLTQ
Ga0193721_113781313300020018SoilSGYLSTIAGGVIAWTATINGNGSVSIVGDPSLGTWPPAVHLTQ
Ga0215015_1036292313300021046SoilMCIRDSFYMPAAGVTINGNSAYQATIAGGVIAWTAGVIGTGNVAITADPTLRTWPPSVHLTQ
Ga0210382_1008688313300021080Groundwater SedimentYLSTIAGGVIAWTATINGNGSVSIVGDPSLGTWPPAVHLTQ
Ga0207684_1101209523300025910Corn, Switchgrass And Miscanthus RhizosphereLIGILYMPTASVTINGNSAYQATIAGGVIAWTATIIGNGTVAITADPTLRSWPSTVRLVQ
Ga0207707_1051222013300025912Corn RhizosphereYAPAADTTIVGSSSYLATIAGGLISWTATIKGNGGVSIMADPTLRTFPSAVRLIQ
Ga0209881_101830613300026273SoilQATIAGGVISWTASVIGTGNVAITADPTLRKWPPSVSLTQ
Ga0209234_119248823300026295Grasslands SoilLIGIFYTPAASVTIIGSSNYLATIAGGVIAWSATVKGNGGVSIMADPTLRTWPSAVRLTQ
Ga0209235_114895923300026296Grasslands SoilAYQATIAGGVIAWTASIIGTGNVAITADATLRTWPPAVNLTQ
Ga0209238_118673213300026301Grasslands SoilTIVGNSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ
Ga0209686_105469433300026315SoilIAGGVIAWTATITGNGNLAIIADASLRAWPSAVRLIQ
Ga0209690_121051313300026524SoilSVTINGNSAYQATIAGGVIAWTASIIGTGNVAITADPTLRTWPPSVHLTQ
Ga0209058_104036813300026536SoilAANVTIVGNSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ
Ga0209056_1072091313300026538SoilSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ
Ga0209376_130394723300026540SoilGSQYQATIAGGVIAWTATITGNGNLAIIADASLRAWPSAVRLIQ
Ga0209805_118423713300026542SoilATIAGGVIAWTATITGNGNLAILADPSLRAWPSAVRLIQ
Ga0209805_140182413300026542SoilSNTYQATIAGGVIAWTATITGAGGVAITADPTLRTWPSAVRLTQ
Ga0209161_1057756423300026548SoilGNSAYQATIAGGVIAWTASIIGTGNVAITADPTLRTWPPSVHLTQ
Ga0209577_1076440723300026552SoilASVTINGNNTYQATIAGGVVAWTAAITGTGGVAITADPTLPTFPSTVRLIQ
Ga0209076_119802023300027643Vadose Zone SoilVPAANVTIVGNSSYLATIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ
Ga0209689_128773023300027748SoilTSRVRATIAGGLVAWTATVLGSENLAISADPSLRAWPSTVRLTQ
Ga0209180_1021496023300027846Vadose Zone SoilITGSSGYLASIAGGLIAYTATINGNGSVSIVGDPSLRTWPPSVRLTQ
Ga0209283_1003348333300027875Vadose Zone SoilGNGFTSLIGIFYMPAAGVTINGNSAYRATIAGGVIAWTAGVIGTGNVAITADPTLRTWPPAVNLTQ
Ga0209283_1057588323300027875Vadose Zone SoilGHGVTSFLGIFYLPAASITITGSSGYVASIAGGLIAYTATINGNGSVSIVGDPSLRTWPPGVHLTQ
Ga0209590_1083692723300027882Vadose Zone SoilGFTSLIGVFYMPAASVTINGNSAYQATIAGGVIAWTVTIIGTGNVAISADPTLRTWPPSVHLTQ
Ga0137415_1059541013300028536Vadose Zone SoilSVTINGNSAYQATIAGGVIAWTASVIGTGNVAITADPTLRKWPPSVTLTQ
Ga0137415_1083633823300028536Vadose Zone SoilGYMATIAGGVIAWTATINGNGSVSIVGDPSLLTFPPSVHLTQ
Ga0307477_1086923613300031753Hardwood Forest SoilYVASIAGGLIAYTATINGNGSVSIVGDPSLRTWPPGVHLTQ
Ga0307477_1087243413300031753Hardwood Forest SoilIFYVPASNVTIIGNSSYLATIAGGVIAWTASIKGNGGVSISADPTLRTWPPSVNLTQ
Ga0307473_1064379313300031820Hardwood Forest SoilIAGGVIAWTASVKGNGGVSILADPTLRTWPPSVTLTQ
Ga0307473_1087233013300031820Hardwood Forest SoilMPTASVTINGNSAYQATIAGGVIAWTATIIGNGTVAITADPTLRSWPSAVRLVQ
Ga0307479_1163556223300031962Hardwood Forest SoilIGNSSYLATIAGGVIAWTATVKGNGGVSISADPSLRTWPSAVRLIQ
Ga0307479_1183348613300031962Hardwood Forest SoilIAGGLIAYTATINGNGSVSIVGDPSLRTWPPGVHLTQ
Ga0307472_10127291823300032205Hardwood Forest SoilGIVYTPAASVQINGSNSYQATIAGGVIAWTATITGNGAVAIIADPTLRTFPSAVRLIQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.