NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100011

Metagenome / Metatranscriptome Family F100011

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100011
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 42 residues
Representative Sequence MPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATLR
Number of Associated Samples 59
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 99.03 %
% of genes from short scaffolds (< 2000 bps) 99.03 %
Associated GOLD sequencing projects 57
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.340 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds
(30.097 % of family members)
Environment Ontology (ENVO) Unclassified
(40.777 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(52.427 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.90%    β-sheet: 0.00%    Coil/Unstructured: 83.10%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A55.34 %
All OrganismsrootAll Organisms44.66 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001448|JGI20219J14954_1009396Not Available592Open in IMG/M
3300001804|JGI20219J20330_103534All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila808Open in IMG/M
3300001806|JGI20216J20342_1005278Not Available716Open in IMG/M
3300001806|JGI20216J20342_1009910Not Available501Open in IMG/M
3300002862|Ga0004695J43176_100324All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila810Open in IMG/M
3300003938|Ga0063230_11915736Not Available510Open in IMG/M
3300007327|Ga0075016_1076203All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila812Open in IMG/M
3300007327|Ga0075016_1077486All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila601Open in IMG/M
3300007327|Ga0075016_1088021All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila788Open in IMG/M
3300008787|Ga0103640_1002834Not Available556Open in IMG/M
3300009580|Ga0115596_1000218All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila747Open in IMG/M
3300009581|Ga0115600_1178625Not Available675Open in IMG/M
3300009581|Ga0115600_1191244Not Available614Open in IMG/M
3300009583|Ga0115598_1088022Not Available559Open in IMG/M
3300009587|Ga0115602_1225518All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila820Open in IMG/M
3300010138|Ga0115595_1196620All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila577Open in IMG/M
3300010143|Ga0126322_1088874Not Available652Open in IMG/M
3300011057|Ga0138544_1081303All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila736Open in IMG/M
3300011087|Ga0138570_1214258All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila781Open in IMG/M
3300011090|Ga0138579_1050587All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila518Open in IMG/M
3300011282|Ga0138293_141413Not Available607Open in IMG/M
3300011340|Ga0151652_10241021Not Available520Open in IMG/M
3300011340|Ga0151652_12084603All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei628Open in IMG/M
3300011340|Ga0151652_13388358Not Available516Open in IMG/M
3300012411|Ga0153880_1041042Not Available698Open in IMG/M
3300012411|Ga0153880_1322846All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila589Open in IMG/M
3300012774|Ga0138283_1199975Not Available506Open in IMG/M
3300013295|Ga0170791_10620251Not Available544Open in IMG/M
3300014490|Ga0182010_10238205All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila963Open in IMG/M
3300016750|Ga0181505_10325151All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila805Open in IMG/M
3300019199|Ga0187789_1226807Not Available730Open in IMG/M
3300019199|Ga0187789_1258714All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila604Open in IMG/M
3300019211|Ga0187799_1260148Not Available754Open in IMG/M
3300019234|Ga0172288_1252355Not Available512Open in IMG/M
3300019234|Ga0172288_1412962Not Available598Open in IMG/M
3300019241|Ga0187793_1087235Not Available779Open in IMG/M
3300019241|Ga0187793_1117045Not Available503Open in IMG/M
3300019241|Ga0187793_1169719Not Available502Open in IMG/M
3300019241|Ga0187793_1283392Not Available554Open in IMG/M
3300019244|Ga0180111_1423554Not Available721Open in IMG/M
3300019245|Ga0187791_1009060Not Available502Open in IMG/M
3300019245|Ga0187791_1023442Not Available775Open in IMG/M
3300019245|Ga0187791_1059370Not Available543Open in IMG/M
3300019245|Ga0187791_1084848All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila609Open in IMG/M
3300019245|Ga0187791_1182750All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila578Open in IMG/M
3300019246|Ga0172287_1388397All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila751Open in IMG/M
3300019246|Ga0172287_1440634Not Available541Open in IMG/M
3300019250|Ga0187790_1210833Not Available561Open in IMG/M
3300019250|Ga0187790_1417116All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila608Open in IMG/M
3300019251|Ga0187795_1125814All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila752Open in IMG/M
3300019251|Ga0187795_1359536Not Available501Open in IMG/M
3300019251|Ga0187795_1514808Not Available502Open in IMG/M
3300019252|Ga0172286_1114131Not Available593Open in IMG/M
3300019264|Ga0187796_1184837All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila582Open in IMG/M
3300019264|Ga0187796_1252495All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila729Open in IMG/M
3300019264|Ga0187796_1268810All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila768Open in IMG/M
3300019264|Ga0187796_1328353All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila592Open in IMG/M
3300019264|Ga0187796_1489997Not Available501Open in IMG/M
3300019265|Ga0187792_1265693All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila602Open in IMG/M
3300019273|Ga0187794_1609589All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila666Open in IMG/M
3300019275|Ga0187798_1090130Not Available784Open in IMG/M
3300019278|Ga0187800_1210166Not Available793Open in IMG/M
3300019284|Ga0187797_1451708Not Available510Open in IMG/M
3300019284|Ga0187797_1452103Not Available508Open in IMG/M
3300021273|Ga0210340_1103057All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila575Open in IMG/M
3300021855|Ga0213854_1113363All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila806Open in IMG/M
3300021855|Ga0213854_1249157All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila646Open in IMG/M
3300021855|Ga0213854_1397358All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila579Open in IMG/M
3300021856|Ga0213850_1171067All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila806Open in IMG/M
3300021856|Ga0213850_1323376All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila576Open in IMG/M
3300021857|Ga0213849_1013638Not Available657Open in IMG/M
3300021858|Ga0213852_1089118All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila805Open in IMG/M
3300021858|Ga0213852_1090189Not Available633Open in IMG/M
3300021858|Ga0213852_1090981Not Available577Open in IMG/M
3300021858|Ga0213852_1357753All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila608Open in IMG/M
3300021860|Ga0213851_1170451Not Available500Open in IMG/M
3300021860|Ga0213851_1715153Not Available648Open in IMG/M
3300021860|Ga0213851_1732336Not Available715Open in IMG/M
3300021860|Ga0213851_1855165Not Available511Open in IMG/M
3300021860|Ga0213851_1901196Not Available611Open in IMG/M
3300021861|Ga0213853_10098854All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila672Open in IMG/M
3300021861|Ga0213853_10309567Not Available519Open in IMG/M
3300021861|Ga0213853_10460842All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila596Open in IMG/M
3300021861|Ga0213853_10461759All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila608Open in IMG/M
3300021861|Ga0213853_10624919Not Available638Open in IMG/M
3300021861|Ga0213853_10629167All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila601Open in IMG/M
3300021861|Ga0213853_10917335Not Available530Open in IMG/M
3300021909|Ga0213846_1105168All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila780Open in IMG/M
3300021929|Ga0213845_1035180All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila517Open in IMG/M
3300021929|Ga0213845_1062213All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila571Open in IMG/M
3300021929|Ga0213845_1148828All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila634Open in IMG/M
3300022154|Ga0213929_1011430Not Available793Open in IMG/M
3300022154|Ga0213929_1011919All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila781Open in IMG/M
3300022161|Ga0213931_1038998Not Available569Open in IMG/M
3300022166|Ga0213932_1070124Not Available520Open in IMG/M
3300022171|Ga0213857_1013044Not Available827Open in IMG/M
3300022185|Ga0079039_1142440Not Available592Open in IMG/M
3300023691|Ga0228704_123010Not Available516Open in IMG/M
3300023703|Ga0228708_1079176Not Available500Open in IMG/M
3300028558|Ga0265326_10096905All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila837Open in IMG/M
3300033433|Ga0326726_12477158Not Available503Open in IMG/M
3300033821|Ga0334818_021642All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila865Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds30.10%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland27.18%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland10.68%
WetlandEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland7.77%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater5.83%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.91%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.94%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.94%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.97%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.97%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.97%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.97%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.97%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.97%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.97%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.97%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.97%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.97%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.97%
Wetland SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001448Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk MetatranscriptomeEnvironmentalOpen in IMG/M
3300001804Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300001806Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300002862Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations RNA 2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300003938Wetland microbial communities from Twitchell Island in the Sacramento Delta, California, USA - surface sediment Aug2011 Site C1 Bulk Metatranscriptome (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300007327Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300008787Microbial communities from wetland soil in Czech Republic - R3_cDNAEnvironmentalOpen in IMG/M
3300009580Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009581Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009583Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_B (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009587Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010138Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_B (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010143Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300011057Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 25 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011087Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011090Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011282Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011340Combined Assembly of Wetland MetatranscriptomesEnvironmentalOpen in IMG/M
3300012411Freshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012774Freshwater microbial communities from Lake Simoncouche, Canada - S_130109_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300014490Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaGEnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019199Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019211Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019234Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_3 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019241Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019244Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019245Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019246Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019250Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019251Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019252Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019254Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019264Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019265Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019273Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019275Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019278Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019284Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021273Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.386 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021855Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021856Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021857Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021858Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021860Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021861Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021909Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - NH:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021929Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022154Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022161Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022166Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022171Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_45 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022185Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023691Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023703Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028558Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaGHost-AssociatedOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033821Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X0EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20219J14954_100939613300001448WetlandMPVADDCSPSEGDAEPASAFLSPVARDYPSRALRGFFMPGDASTV
JGI20219J20330_10353413300001804WetlandMPVAGDCSPAEGEGEPASTYLSPVARDYPSRALRGFFMPGDAST
JGI20216J20342_100527813300001806WetlandMPVADDCSPSEGDAEPASAFLSPVARDYPSRALRGFFMPGDAST
JGI20216J20342_100991013300001806WetlandMPADDDCSPSEGEAEPASTFLSPVARDYPSRALRGSFHTRSAST
Ga0004695J43176_10032413300002862Arctic Peat SoilMPFIHDCSQTKGQAEPASAYLSPVARDYPNRALRGFFMPTALRL
Ga0063230_1191573623300003938WetlandMPVASDCSLSEGEAEPASAFLSPVTRDYPSRALRGFFMPAA
Ga0075016_107620313300007327WatershedsMPDFRDCSQSEGRAEPASAHLSPVARDYPSRALRRFFMPATL
Ga0075016_107748613300007327WatershedsMPCTRDCSPMKGRAEPASACLSPVARDYPNRALRRFFMPAALR
Ga0075016_108802113300007327WatershedsMPRSRDCSRSEGEVEPASTFLSPVARDYPSRALRRFFMPATL
Ga0103640_100283413300008787Wetland SoilMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPN
Ga0115596_100021813300009580WetlandMPFSRDCSRLKGMAEPASATLSPVARDYPSRALRGFFMPVTPR
Ga0115600_117862513300009581WetlandMPAARDCSQSEGKPEPASVFLSPVARDYPSRALRG
Ga0115600_119124413300009581WetlandMPVADDCSPSEGEAEPASTFLSPVARDYPSRALRGFFMPGDAST
Ga0115598_108802223300009583WetlandMPAVDDCSPSEGEAEPASTFLSPVARDYPSRALRGSFHTR
Ga0115602_122551823300009587WetlandMPADDDCSPSEGEAEPASTFLSPVARDYPSRALRGSFHTRSAS
Ga0115595_119662013300010138WetlandMPAVNDCSPSEGEAEPASTFLSPVARDYPSRALRGLFHARDTST
Ga0126322_108887413300010143SoilMPATRDCSRSEGRAEPASANLSPVARDYPSRALRGFFRPAMPR
Ga0138544_108130313300011057Peatlands SoilMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPSA
Ga0138570_121425823300011087Peatlands SoilMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPSAPRLF
Ga0138579_105058713300011090Peatlands SoilMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPSAPRL
Ga0138293_14141323300011282WatershedsMPVADDCSPSEGEAEPASTFLSPVTRDYPSRALRGFFMPGAAS
Ga0151652_1024102113300011340WetlandMPVASDCSLSEGEAEPASAFLSPVTRDYPSRALRRF
Ga0151652_1208460313300011340WetlandMPFLRDCSRSKGKTEPASVFLSPVARDYPSRAFRKF
Ga0151652_1338835813300011340WetlandMPVFRDYSRSEGEAEPASAFLSPVTRDYPSRALRRF
Ga0153880_104104213300012411Freshwater SedimentMPVFRDYSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATLR
Ga0153880_132284613300012411Freshwater SedimentMPFARDCSLTKGEAEPASAFLSPVARDYPNRALGGVFRPPRCDCS
Ga0138283_119997513300012774Freshwater LakeMPVFRDYSQSEGEAEPASAFLSPVARDYHSRALRRFFMPATL
Ga0170791_1062025113300013295FreshwaterMPVFRDYSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATLRLF
Ga0182010_1023820513300014490FenMPVAGDCSPSEGKAEPASTFLSPVARDYPSRTLRGFFMPGG
Ga0181505_1032515113300016750PeatlandMPFIRDCSPTKGKTEPASAFLSPVARDYPSRAFHRFFMAAVPR
Ga0187789_122680713300019199PeatlandMPFLRDCSRSKGKTEPASVFLSPVARDYPSRAFRKFFMPAAPRL
Ga0187789_125871413300019199PeatlandMPAFRDCSRPEGEAEPASAFLSPVTRDYPSRALRRFFIPATLRL
Ga0187799_126014823300019211PeatlandMPASRDCSRSEGMAEPASTVLSPVARDYPSRALRGFFMPTA
Ga0172288_125235513300019234WetlandMPAVSDCSPSEGEAEPASTFLSPVARDYPSRALRG
Ga0172288_141296213300019234WetlandMPASRDCSRSEGKTEPASAHLSPVARDYPSRALRGFFMPATPRLF
Ga0187793_108723523300019241PeatlandMPPFRDCSLQEGQTEPASACLSPVARDYPSRALRRFFM
Ga0187793_111704523300019241PeatlandMPVACDCSQSEGKPEPASVFLSPVARDYPSRDLRGFFMPTA
Ga0187793_116971913300019241PeatlandVTYASARDCSLLEGEAEPASTFLSPVAREYPSRAFRRFFMPAALRL
Ga0187793_128339213300019241PeatlandMPATGDFSPLQGKAEPASTVLSPVARDYPSRTLRGFFMPAAPR
Ga0180111_142355413300019244Groundwater SedimentMPLFRDCSRLEGEAEPASAFLSPVARDYPSRALRRFFMPATLRLF
Ga0187791_100906013300019245PeatlandVIYASFHDCSCLEGEGEPASTFLSPVAREYPSRAFHRFFMPAALRLF
Ga0187791_102344213300019245PeatlandMPFLRDCSRSKGKTEPASVFLSPVARDYPSRAFRKFFMPAA
Ga0187791_105937013300019245PeatlandMPVACDCSPAKGMVEPASATLSPVARDYPSRALRGFFRPATPRL
Ga0187791_108484813300019245PeatlandMPAFRDCSRPEGEAEPASAFLSPVTRDYPSRALRRFFIPATLRLF
Ga0187791_118275013300019245PeatlandMPFIRDCSQTKGKTEPASAFLSPVARDYPSHALRRFFMPAAL
Ga0172287_138839713300019246WetlandMPVFDDCSPSEGKAEPASTFLSPVARDYPSRTLSGFFIPAAPRLF
Ga0172287_144063413300019246WetlandMPADDDCSPSEGEAEPASTFLSPVARDYPSRALRGSFHTRSASTV
Ga0187790_121083313300019250PeatlandMPFLRDCSRPKGMAEPASFTLSPVARDYPSRALRRFFMPGGAS
Ga0187790_141711613300019250PeatlandMPAFRDCSRPEGEAEPASAFLSPVTRDYPSRALRGFFMPAAP
Ga0187795_112581423300019251PeatlandMPASRDCSRSEGRTEPASVFLSPVARDYPSRALRGFFMPA
Ga0187795_135953613300019251PeatlandVIYASFHDCSCLEGEGEPASTFLSPVAREYPSRAFRRFFMPAAL
Ga0187795_151480813300019251PeatlandVTYASARDCSLLEGEAEPASTFLSPVAREYPSRAFRRFFMPAAL
Ga0172286_111413113300019252WetlandMPAARDCSQSEGKPEPASVFLSPVARDYPSRALRGFFMPAALRL
Ga0184641_108736613300019254Groundwater SedimentMSACRGDCSCAEGMAEPASAALSPVARDYPSPRFRLFFNSRCAWLF
Ga0187796_118483723300019264PeatlandMPVFRDCSRSEGEAEPASAFLSPVARDYPSRALRRFFMPATLRLF
Ga0187796_125249513300019264PeatlandMPFLRDCSRPKGKAEPASAFLSPVTRDYPSRAYRRFFM
Ga0187796_126881013300019264PeatlandMPFISDCSPTKGETEPASAFLSPVARDYPSRARHRFFMPEALRL
Ga0187796_132835313300019264PeatlandMPIIRDCSPMKGRVEPASAFLSPVARDYPSRALRWFFMPAAPRL
Ga0187796_148999723300019264PeatlandVIYASFHDCSCLEGEGEPASTFLSPVAREYPSRAFRRFFMPAALRLF
Ga0187792_126569313300019265PeatlandMPASHDCSRSEGRAEPASANLSPVARDYPSRALRGFFMPATPRL
Ga0187794_160958923300019273PeatlandMPCASDCSPAEGEAEPASACLSPVARDYPSRALRRFFMPAT
Ga0187798_109013013300019275PeatlandMPVAGDCSPTEGNAEPASTFLSPVARDYPSRALHGFFMPGGAS
Ga0187800_121016623300019278PeatlandMPFIRDCSPTKGKTEPASAFLSPVARDYPSRALHRFFMPAAPRLF
Ga0187797_145170813300019284PeatlandMPFIRDCSPTKGKTEPASAFLSPVARDYPSRALHRFFMPAAPRL
Ga0187797_145210313300019284PeatlandMPGIRDCSPIQGKAEPASAVLSPVARDYPSRAFHRFFMPAAHR
Ga0210340_110305723300021273EstuarineMPVFHDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATLRLF
Ga0213854_111336313300021855WatershedsMPAADDCSPPEGKAEPASVFLSPVTRDYPSRALRGFFMPAAPR
Ga0213854_124915713300021855WatershedsMPRSRDCSRSEGEVEPASTFLSPVARDYPSRALRRFFMPAT
Ga0213854_139735823300021855WatershedsMPDFRDCSQSEGRAEPASAHLSPVARDYPSRALRRFFMPATLR
Ga0213850_117106713300021856WatershedsMPLIRDCSPTKGKTEPASAVLSPVARDYPSRALHRFFMPAALR
Ga0213850_132337613300021856WatershedsMPVDRDCSPSEGRAEPASAFLSPVARDYPSRTLRGFFIPTATRL
Ga0213849_101363813300021857WatershedsMPVVRDCSQSEGKPEPASVFLSPVARDYPSRALRGFFIPATLRLF
Ga0213852_108911813300021858WatershedsMPRSRDCSRSEGEVEPASTFLSPVARDYPSRALRRFFM
Ga0213852_109018923300021858WatershedsMPRPHDCSRLEGEAEPASAFLSPVARDYPSRALRRFFM
Ga0213852_109098123300021858WatershedsMPRAGDCSPSEGKAEPASTILSPVARDYPSRALRGFFM
Ga0213852_135775313300021858WatershedsMPWIGDCSPTKGQTEPASACLSPVARDYPNRALRRFFMPAALRLF
Ga0213851_117045113300021860WatershedsMPASRDCSRSEGKTEPASANLSPVARDYPSRALRGFFMPAT
Ga0213851_171515313300021860WatershedsMPRPHDCSQLEGEAEPASAFLSPVARDYPSRALRRF
Ga0213851_173233613300021860WatershedsVIYASACDCSLLEGEAEPASTFLSPVARDYPSRAFHRFFMPAALRLF
Ga0213851_185516513300021860WatershedsMPLIRDCSPTKGKTEPASAVLSPVARDYPSRALHRFFMPAALRLF
Ga0213851_190119623300021860WatershedsMPRSRDCSRSEGEVEPASTFLSPVARDYPSRALRRFFMPATLRLF
Ga0213853_1009885413300021861WatershedsMPDFRDCSQSEGRAEPASAHLSPVARDYPSRALRRFFMPATLRLF
Ga0213853_1030956713300021861WatershedsMPVFRDCSRSEGEAEPASAFLSPVARDYPSRALRRFFMPA
Ga0213853_1046084213300021861WatershedsMPWIGDCSPTKGQTEPASACLSPVARDYPNRALRRFFMPAA
Ga0213853_1046175913300021861WatershedsMPCTRDCSPMKGRAEPASACLSPVARDYPNRALRRFFMPAALRLF
Ga0213853_1062491923300021861WatershedsMPVVRDCSQSEGKPEPASVFLSPVARDYPSRALRGFFIP
Ga0213853_1062916713300021861WatershedsMPWIGDCSPTKGRAEPASAVLSPVARDYPNRALRRFFMPAA
Ga0213853_1091733513300021861WatershedsMPVVRDCSPTEGKAEPAPAYLSPVARDYPSRALLRFFMPETLRL
Ga0213846_110516813300021909WatershedsMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATLRL
Ga0213845_103518013300021929WatershedsMPVFRDCSRSEGEAEPASAFLSPVTRDYPSRALRRFFMPATLRL
Ga0213845_106221323300021929WatershedsMPVAGDCSPSEGKAEPASTFLSPVARDYPSRALRGFFMPGGASTVP
Ga0213845_114882813300021929WatershedsMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATLR
Ga0213929_101143013300022154FreshwaterMPTARDCSQSEGKPEPASVFLSPVARDYPSRALRGFF
Ga0213929_101191913300022154FreshwaterMPASRDCSRSEGMAEPASTVLSPVARDYPSRALRGFFMPTTL
Ga0213931_103899813300022161FreshwaterMPVSCDCSQSEGEAEPASAYLSPVARDYPSRALRRFFMPATLR
Ga0213932_107012413300022166FreshwaterMPAARDCSQSEGKPEPASVFLSPVARDYPSRALRGFFMPATLRL
Ga0213857_101304423300022171WatershedsMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATLRLF
Ga0079039_114244013300022185Freshwater WetlandsMPASRDCSQSEGKTEPASANLSPVARDYPSRALRGFFMPATPR
Ga0228704_12301023300023691FreshwaterVIYASACDCSLLEGEAEPASTFLSPVARDYPSRAFRRFFMPAALRLF
Ga0228708_107917613300023703FreshwaterMPASRDCSRSEGKAEPASANLSPVARDYPSRALRGFFMPATPR
Ga0265326_1009690523300028558RhizosphereMPVADDCSPSEGKAEPASTFLSPVTRDYPSRTLRGFFMPGG
Ga0326726_1247715813300033433Peat SoilMPAARDCSQSEGKPEPASVFLSPVARDYPSRALRGFFMPA
Ga0334818_021642_1_1263300033821SoilMPVFRDCSQSEGEAEPASAFLSPVARDYPSRALRRFFMPATL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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