Metagenome / Metatranscriptome Family F099733

Basic Information
Family ID	F099733
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	63 residues
Representative Sequence	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	45.54 %
% of genes near scaffold ends (potentially truncated)	52.43 %
% of genes from short scaffolds (< 2000 bps)	90.29 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (67.961 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.417 % of family members)
Environment Ontology (ENVO)	Unclassified (43.689 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.136 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF07369	DUF1488	20.39
PF02586	SRAP	5.83
PF04120	Iron_permease	1.94
PF13561	adh_short_C2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	5.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
All Organisms	root	All Organisms	32.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
cellular organisms	root	All Organisms → cellular organisms	32.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.13 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.13 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28.16 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	23.30 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.94 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	23.30 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.97 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	23.30 %
Kitasatospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Kitasatospora	0.97 %
Methyloceanibacter stevinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter stevinii	0.97 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	23.30 %
Kitasatospora cheerisanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Kitasatospora → Kitasatospora cheerisanensis	0.97 %
Methyloceanibacter stevinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter stevinii	0.97 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16504896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1125	Open in IMG/M
2170459015\|G14TP7Y02FTI0L	Not Available	715	Open in IMG/M
3300000890\|JGI11643J12802_10780504	Not Available	1066	Open in IMG/M
3300000956\|JGI10216J12902_105378502	Not Available	510	Open in IMG/M
3300001990\|JGI24737J22298_10017203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2331	Open in IMG/M
3300002075\|JGI24738J21930_10144125	Not Available	527	Open in IMG/M
3300002076\|JGI24749J21850_1033914	Not Available	738	Open in IMG/M
3300004156\|Ga0062589_101064278	Not Available	762	Open in IMG/M
3300004156\|Ga0062589_101365323	Not Available	689	Open in IMG/M
3300004157\|Ga0062590_102043001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	596	Open in IMG/M
3300004643\|Ga0062591_101470334	Not Available	680	Open in IMG/M
3300004801\|Ga0058860_11969171	Not Available	709	Open in IMG/M
3300005294\|Ga0065705_10954366	Not Available	560	Open in IMG/M
3300005328\|Ga0070676_10048964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2472	Open in IMG/M
3300005336\|Ga0070680_101015810	Not Available	716	Open in IMG/M
3300005354\|Ga0070675_102076511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter stevinii	524	Open in IMG/M
3300005364\|Ga0070673_100252641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1537	Open in IMG/M
3300005365\|Ga0070688_100573367	Not Available	860	Open in IMG/M
3300005406\|Ga0070703_10067270	Not Available	1187	Open in IMG/M
3300005441\|Ga0070700_100320355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1139	Open in IMG/M
3300005444\|Ga0070694_100206907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1465	Open in IMG/M
3300005457\|Ga0070662_100116479	All Organisms → cellular organisms → Bacteria	2042	Open in IMG/M
3300005535\|Ga0070684_100132924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2245	Open in IMG/M
3300005543\|Ga0070672_101487688	Not Available	607	Open in IMG/M
3300005546\|Ga0070696_100814187	Not Available	769	Open in IMG/M
3300005616\|Ga0068852_100624179	Not Available	1084	Open in IMG/M
3300005719\|Ga0068861_100490257	Not Available	1109	Open in IMG/M
3300006049\|Ga0075417_10236011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	874	Open in IMG/M
3300006173\|Ga0070716_101007502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Kitasatospora → Kitasatospora cheerisanensis	659	Open in IMG/M
3300006194\|Ga0075427_10042517	Not Available	769	Open in IMG/M
3300006196\|Ga0075422_10206003	Not Available	810	Open in IMG/M
3300006755\|Ga0079222_10963482	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300006804\|Ga0079221_10254343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1000	Open in IMG/M
3300006845\|Ga0075421_102156138	Not Available	589	Open in IMG/M
3300006846\|Ga0075430_100327627	Not Available	1266	Open in IMG/M
3300006847\|Ga0075431_100686181	Not Available	1002	Open in IMG/M
3300006847\|Ga0075431_101682496	Not Available	591	Open in IMG/M
3300006847\|Ga0075431_102121163	Not Available	517	Open in IMG/M
3300006852\|Ga0075433_10526742	Not Available	1040	Open in IMG/M
3300006854\|Ga0075425_101964513	Not Available	655	Open in IMG/M
3300006854\|Ga0075425_102270750	Not Available	603	Open in IMG/M
3300006903\|Ga0075426_11163706	Not Available	584	Open in IMG/M
3300006904\|Ga0075424_100187552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2194	Open in IMG/M
3300006904\|Ga0075424_101082110	Not Available	854	Open in IMG/M
3300006954\|Ga0079219_12475011	Not Available	505	Open in IMG/M
3300006969\|Ga0075419_10632080	Not Available	754	Open in IMG/M
3300007076\|Ga0075435_100227726	Not Available	1583	Open in IMG/M
3300009156\|Ga0111538_10709876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1274	Open in IMG/M
3300009156\|Ga0111538_13071212	Not Available	582	Open in IMG/M
3300009162\|Ga0075423_12507646	Not Available	563	Open in IMG/M
3300010371\|Ga0134125_10243820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1997	Open in IMG/M
3300010371\|Ga0134125_11320096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	787	Open in IMG/M
3300010375\|Ga0105239_11086248	Not Available	921	Open in IMG/M
3300010375\|Ga0105239_11201095	Not Available	874	Open in IMG/M
3300010396\|Ga0134126_10841416	Not Available	1035	Open in IMG/M
3300010397\|Ga0134124_12100017	Not Available	603	Open in IMG/M
3300010399\|Ga0134127_13655903	Not Available	505	Open in IMG/M
3300010400\|Ga0134122_10787567	Not Available	906	Open in IMG/M
3300012898\|Ga0157293_10077569	Not Available	807	Open in IMG/M
3300012902\|Ga0157291_10086563	Not Available	825	Open in IMG/M
3300012904\|Ga0157282_10083285	Not Available	861	Open in IMG/M
3300012907\|Ga0157283_10022314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1215	Open in IMG/M
3300012912\|Ga0157306_10014283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1604	Open in IMG/M
3300012961\|Ga0164302_10624746	Not Available	785	Open in IMG/M
3300013100\|Ga0157373_10563737	Not Available	827	Open in IMG/M
3300013296\|Ga0157374_12456062	Not Available	549	Open in IMG/M
3300015200\|Ga0173480_10995857	Not Available	552	Open in IMG/M
3300015201\|Ga0173478_10227132	Not Available	801	Open in IMG/M
3300015371\|Ga0132258_13049783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1159	Open in IMG/M
3300015373\|Ga0132257_102542324	Not Available	665	Open in IMG/M
3300017792\|Ga0163161_10184419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1601	Open in IMG/M
3300019356\|Ga0173481_10049097	Not Available	1444	Open in IMG/M
3300019356\|Ga0173481_10704716	Not Available	546	Open in IMG/M
3300019361\|Ga0173482_10023549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1780	Open in IMG/M
3300019361\|Ga0173482_10487140	Not Available	595	Open in IMG/M
3300019362\|Ga0173479_10397465	Not Available	664	Open in IMG/M
3300020080\|Ga0206350_10460050	Not Available	813	Open in IMG/M
3300020082\|Ga0206353_10040874	Not Available	890	Open in IMG/M
3300022915\|Ga0247790_10054307	Not Available	927	Open in IMG/M
3300023064\|Ga0247801_1012464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1075	Open in IMG/M
3300023064\|Ga0247801_1077449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	539	Open in IMG/M
3300025885\|Ga0207653_10363245	Not Available	566	Open in IMG/M
3300025893\|Ga0207682_10154916	Not Available	1035	Open in IMG/M
3300025898\|Ga0207692_10192003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1196	Open in IMG/M
3300025900\|Ga0207710_10009476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4096	Open in IMG/M
3300025906\|Ga0207699_10210834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1321	Open in IMG/M
3300025908\|Ga0207643_10588595	Not Available	716	Open in IMG/M
3300025912\|Ga0207707_10207951	Not Available	1705	Open in IMG/M
3300025914\|Ga0207671_10476495	Not Available	995	Open in IMG/M
3300025921\|Ga0207652_10603477	Not Available	984	Open in IMG/M
3300025986\|Ga0207658_10058206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2875	Open in IMG/M
3300026035\|Ga0207703_10454209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1197	Open in IMG/M
3300026075\|Ga0207708_10422650	Not Available	1105	Open in IMG/M
3300026078\|Ga0207702_10758062	Not Available	958	Open in IMG/M
3300026088\|Ga0207641_10072286	Not Available	2970	Open in IMG/M
3300027907\|Ga0207428_10280870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1236	Open in IMG/M
3300031716\|Ga0310813_10405415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1174	Open in IMG/M
3300031716\|Ga0310813_11222176	Not Available	693	Open in IMG/M
3300032075\|Ga0310890_10435994	Not Available	981	Open in IMG/M
3300032179\|Ga0310889_10168732	Not Available	992	Open in IMG/M
3300032211\|Ga0310896_10050708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.37%
Host-Associated	Host-Associated	44.66%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.37%
Plants	Host-Associated → Plants	43.69%
Human	Host-Associated → Human	0.97%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.65%
Digestive System	Host-Associated → Human → Digestive System	0.97%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.24%
Loam	Environmental → Terrestrial → Soil → Loam	14.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.97%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.97%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02225090	2088090014	Soil	MNLPKENLPSSPRKNRKLALILGGITILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
4PV_00746770	2170459015	Switchgrass, Maize And Mischanthus Litter	KSDMNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAKP
JGI11643J12802_107805042	3300000890	Soil	MNLPKENLPSSPRKNRKLALILGGITILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
JGI10216J12902_1053785021	3300000956	Soil	IVMGNLRDDAANPEVKNRKLVWILGGMAILGMMALIALVLFSSFPGPPQGSLDKSEAPPEDVSKAKP*
JGI24737J22298_100172034	3300001990	Corn Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAXKSEAPPEDVSKAKP*
JGI24738J21930_101441252	3300002075	Corn Rhizosphere	NLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP*
JGI24749J21850_10339141	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	LPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP*
Ga0062589_1010642783	3300004156	Soil	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAKP*
Ga0062589_1013653231	3300004156	Soil	MNLPKENLPSSPRKNRKLVLILGGITILGMVTLIGFVLLSTFPGPTQGSADKSEAPPEDVGKAKP*
Ga0062590_1020430011	3300004157	Soil	MDALRDDPETPEGKGHKLTLIVGGMAILGMLALIALVLFSSFPGPPQGSSDKSEAPPEDVSKAKP*
Ga0062591_1014703341	3300004643	Soil	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPDKTEAPPEDVSKAKP*
Ga0058860_119691713	3300004801	Host-Associated	SRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAKP*
Ga0065705_109543662	3300005294	Switchgrass Rhizosphere	KNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0070676_100489645	3300005328	Miscanthus Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP*
Ga0070680_1010158101	3300005336	Corn Rhizosphere	SRPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0070675_1020765111	3300005354	Miscanthus Rhizosphere	EGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPDKTEAPPEDVSKAKP*
Ga0070673_1002526414	3300005364	Switchgrass Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNLAGPTQGSADKSEAPPEDVSKAKP*
Ga0070688_1005733673	3300005365	Switchgrass Rhizosphere	PRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP*
Ga0070703_100672702	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAEP*
Ga0070714_1012838812	3300005435	Agricultural Soil	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADK
Ga0070700_1003203554	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SGMNLPKENLPSSPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0070694_1002069071	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0070662_1001164796	3300005457	Corn Rhizosphere	RKSNMNLPKENLPSRPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0070684_1001329243	3300005535	Corn Rhizosphere	MNLPKENLPSRPRKSRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAKP*
Ga0070672_1014876882	3300005543	Miscanthus Rhizosphere	KENLTSSPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAKP*
Ga0070696_1008141872	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0068852_1006241794	3300005616	Corn Rhizosphere	PSPSALHACQQRKSGMNLPKENLPSSPHKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0068861_1004902571	3300005719	Switchgrass Rhizosphere	MNLPKENLPSRPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0075417_102360111	3300006049	Populus Rhizosphere	MNLPKENLPSSPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0070716_1010075021	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNLPKENLPSRPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEATPEDVSKAKP*
Ga0075427_100425172	3300006194	Populus Rhizosphere	MNLPKENLPSSPRKNRKVALILGGMTILGMLALIGLVLRSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0075422_102060032	3300006196	Populus Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLVLIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0079222_109634821	3300006755	Agricultural Soil	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALVALVLYSNFPGPPPGSPDKTEAPPEDVSKAKP*
Ga0079221_102543431	3300006804	Agricultural Soil	MNLPKENLPSSPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAK
Ga0075421_1021561381	3300006845	Populus Rhizosphere	KSGMNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0075430_1003276271	3300006846	Populus Rhizosphere	PRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0075431_1006861811	3300006847	Populus Rhizosphere	PSPSALHACQQRKSGMNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0075431_1016824962	3300006847	Populus Rhizosphere	ENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSSFPGPTQGSADKSEAPPEDVSKAKP
Ga0075431_1021211631	3300006847	Populus Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMVALIGLVLLSNFPGPMQGSAHKS
Ga0075433_105267422	3300006852	Populus Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKVKP*
Ga0075425_1019645132	3300006854	Populus Rhizosphere	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALILYSSFPGPPHGSPDKTEAPPEDVSKAKP*
Ga0075425_1022707501	3300006854	Populus Rhizosphere	HACQQRKSGMNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0075426_111637061	3300006903	Populus Rhizosphere	ENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0075424_1001875526	3300006904	Populus Rhizosphere	MNLPKENLPSRPRKSRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP*
Ga0075424_1010821102	3300006904	Populus Rhizosphere	MSLPKENLPSSPRKNRKLALILGGMTILGMLVLIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0079219_124750112	3300006954	Agricultural Soil	MNLSKENLPSSPRKNRKLALILGVMTILGMLVLIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0075419_106320802	3300006969	Populus Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVGKAKP*
Ga0075435_1002277262	3300007076	Populus Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKMKP*
Ga0111538_107098761	3300009156	Populus Rhizosphere	RKSGMNLPKENLPSSPRKNRKFALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKMKP*
Ga0111538_130712121	3300009156	Populus Rhizosphere	MSLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEGSPKHPAPSTTS*
Ga0075423_125076461	3300009162	Populus Rhizosphere	KSGMNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKMKP*
Ga0134125_102438201	3300010371	Terrestrial Soil	PRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0134125_104433083	3300010371	Terrestrial Soil	MNLPKENLPSRPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADK
Ga0134125_113200962	3300010371	Terrestrial Soil	MNLPKGNLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVIKV
Ga0105239_110862482	3300010375	Corn Rhizosphere	MNLPKENLPSRPRKNRKVALILGGMTILGMLVLIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0105239_112010953	3300010375	Corn Rhizosphere	SSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0134126_108414161	3300010396	Terrestrial Soil	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPDKTEAPPEDLSKAKP*
Ga0134124_121000172	3300010397	Terrestrial Soil	SSPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSAEKSEAPPEDVSKAKP*
Ga0134127_136559031	3300010399	Terrestrial Soil	MNLPKENLPSSPRKNRKLALILGGMTILGMLVLIGLVLLSNFPGPTQGSLDKSEAPPEDVSKAKP*
Ga0134122_107875672	3300010400	Terrestrial Soil	MNLPKENLPSRPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPRQGSADKSEAPPEDVSKAKP*
Ga0157293_100775692	3300012898	Soil	GMNLPKENLPSSPLKNRKLAPILGGMTILGMLALIGLVLLSNFPAQRRAAQTNPKPHRKTLVRRSPKHPAPSTTS*
Ga0157291_100865633	3300012902	Soil	GLLANKEAKMDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPDKTEAPPEDVSKAKP*
Ga0157282_100832851	3300012904	Soil	LPSSPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP*
Ga0157283_100223142	3300012907	Soil	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPNKTEDPPEDVSKAKP*
Ga0157306_100142832	3300012912	Soil	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPTQGSLDKSEAPPEDVGKAKP*
Ga0164302_106247461	3300012961	Soil	RKSDMNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP*
Ga0157373_105637373	3300013100	Corn Rhizosphere	PRKNRRLALILGGMTILGMLALIRLVLLSNFPGPTQGSADKSGAPPEDVSKAKP*
Ga0157374_124560622	3300013296	Miscanthus Rhizosphere	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPDKTEAPPEDVSKTKP*
Ga0173480_109958571	3300015200	Soil	MNLPKENLPSSPRKNRKLALILGGTTIRHAGTDRSGLTQQLPGPTQGSADKSEAPPED
Ga0173478_102271322	3300015201	Soil	MDALRDEPETPEGKGHKLTFIVGGMAILGMLAFIALVLYSSFPGPPHGSPDKTEAPPEDVSKAKR*
Ga0132258_130497831	3300015371	Arabidopsis Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLVLIGLVLLSNFPGPTQGSADKSEAPPEDVSKVKP*
Ga0132257_1025423241	3300015373	Arabidopsis Rhizosphere	ENLPSSPRKNRKLALILGGMTILGMLVLIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0163161_101844193	3300017792	Switchgrass Rhizosphere	MNLPKENLPSRPRKNRKLVLMLGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAKP
Ga0173481_100490971	3300019356	Soil	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPDKTEAPPEDVSKAKP
Ga0173481_107047162	3300019356	Soil	MNLSKENLPSSPRKNRKLVLILGGITILGMVTLIGFVLLSTFPGPTQGSADKSEAPPEDVGKAKP
Ga0173482_100235493	3300019361	Soil	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP
Ga0173482_104871402	3300019361	Soil	TPEGKGHKLTLIVGGMAILGMLALIALVLFSSFPGPPQGSSDKSEAPPEDVSKAKP
Ga0173479_103974652	3300019362	Soil	MDALRDEPETPEGKGHKLTLIVGGMAILGVLALIALVLYSSFPGPPHGSPDKTEAPPEDVSKAKR
Ga0206350_104600501	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	KSGMSLPKENLPSSPRKNRKLALILGGMPILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0206353_100408741	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	KENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAK
Ga0247790_100543072	3300022915	Soil	MNLPKENLPSSPRKNRKLVLILGGITILGMVTLIGFVLLSTFPGPTQGSADKSEAPPEDVGKAKP
Ga0247801_10124641	3300023064	Soil	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAP
Ga0247801_10774492	3300023064	Soil	LANKEAKMDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSSFPGPPHGSPDKTEAPPEDVSKAKP
Ga0207653_103632452	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	PPRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAEP
Ga0207682_101549162	3300025893	Miscanthus Rhizosphere	NLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP
Ga0207692_101920032	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MNLPKENLPSRPRKSRKLVLILGGITILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0207710_100094764	3300025900	Switchgrass Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHK
Ga0207699_102108341	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPE
Ga0207643_105885951	3300025908	Miscanthus Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEA
Ga0207707_102079511	3300025912	Corn Rhizosphere	ENLPPRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSADKSEAPPEDVSKAKP
Ga0207671_104764952	3300025914	Corn Rhizosphere	PSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP
Ga0207652_106034772	3300025921	Corn Rhizosphere	MNLPKENLPSRPRKSRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP
Ga0207658_100582065	3300025986	Switchgrass Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0207703_104542093	3300026035	Switchgrass Rhizosphere	MNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAP
Ga0207708_104226502	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MNLPKENLPSSPRKNRKVALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0207702_107580621	3300026078	Corn Rhizosphere	LPKENLPSRPRKSRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP
Ga0207641_100722861	3300026088	Switchgrass Rhizosphere	RKSDMNLPKENLPSRPRKNRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP
Ga0207428_102808702	3300027907	Populus Rhizosphere	MNLPKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKVKP
Ga0310813_104054151	3300031716	Soil	PTRKSDMNLPKENLPSRPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0310813_112221762	3300031716	Soil	MDALRDEPETPEGKGHKLTFIVGGMAILGMLALIALVLYSNFPGPPHGSPDKTEAPPEDVSKAKP
Ga0310890_104359941	3300032075	Soil	RKSRKLVLILGGITILGMLALIGLVLLSNFPGPMQGSAHKSEAPPEDVSKAKP
Ga0310889_101687322	3300032179	Soil	PKENLPSSPRKNRKLALILGGMTILGMLALIGLVLLSNFPGPTQGSADKSEAPPEDVSKAKP
Ga0310896_100507084	3300032211	Soil	MNLPKENLPSRPRKNRKLVLILGGITILGILALIGLVLLSNFPGPMQGSADKSEAPP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099733

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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