Metagenome / Metatranscriptome Family F099724

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099724
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	106 residues
Representative Sequence	VIVGGGLEAVVVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
Number of Associated Samples	95
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	45.63 %
% of genes near scaffold ends (potentially truncated)	71.84 %
% of genes from short scaffolds (< 2000 bps)	92.23 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.330 % of family members)
Environment Ontology (ENVO)	Unclassified (42.718 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.515 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.87% β-sheet: 31.16% Coil/Unstructured: 57.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF16661	Lactamase_B_6	3.88
PF01244	Peptidase_M19	1.94
PF01345	DUF11	1.94
PF00753	Lactamase_B	1.94
PF12706	Lactamase_B_2	0.97
PF02866	Ldh_1_C	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG0039	Malate/lactate dehydrogenase	Energy production and conversion [C]	0.97

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.52 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	8.74 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	66.02 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8.74 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	5.83 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	51.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	8.74 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	5.83 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	51.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	8.74 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	5.83 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	51.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	8.74 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	5.83 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	51.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	8.74 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	5.83 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	51.46 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	8.74 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	5.83 %
Unclassified	root	N/A	1.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459023\|GZGNO2B01EO602	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	514	Open in IMG/M
3300000890\|JGI11643J12802_11189746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300004114\|Ga0062593_103171035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300004156\|Ga0062589_102231610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300004479\|Ga0062595_101034025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	710	Open in IMG/M
3300004798\|Ga0058859_11549306	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300005343\|Ga0070687_100797346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	669	Open in IMG/M
3300005437\|Ga0070710_11067098	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300005548\|Ga0070665_100128042	All Organisms → cellular organisms → Bacteria	2541	Open in IMG/M
3300005764\|Ga0066903_108902451	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	509	Open in IMG/M
3300006046\|Ga0066652_101581769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300006173\|Ga0070716_101288422	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300006237\|Ga0097621_102346242	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300009098\|Ga0105245_11126877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	831	Open in IMG/M
3300009100\|Ga0075418_13153660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300009137\|Ga0066709_100283231	All Organisms → cellular organisms → Bacteria	2240	Open in IMG/M
3300009148\|Ga0105243_11164650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	782	Open in IMG/M
3300009148\|Ga0105243_12527300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300009553\|Ga0105249_10861268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	972	Open in IMG/M
3300009553\|Ga0105249_12147989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	631	Open in IMG/M
3300010043\|Ga0126380_11499765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	597	Open in IMG/M
3300010333\|Ga0134080_10511580	Not Available	572	Open in IMG/M
3300010366\|Ga0126379_12838463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300010373\|Ga0134128_11275984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	810	Open in IMG/M
3300010376\|Ga0126381_100772085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1378	Open in IMG/M
3300012198\|Ga0137364_10320551	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1153	Open in IMG/M
3300012198\|Ga0137364_10500782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300012199\|Ga0137383_10380434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1034	Open in IMG/M
3300012203\|Ga0137399_10247432	All Organisms → cellular organisms → Bacteria	1461	Open in IMG/M
3300012203\|Ga0137399_11066983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	680	Open in IMG/M
3300012205\|Ga0137362_10018653	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5297	Open in IMG/M
3300012207\|Ga0137381_11451800	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300012211\|Ga0137377_10695434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	951	Open in IMG/M
3300012285\|Ga0137370_10138812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1398	Open in IMG/M
3300012353\|Ga0137367_10057021	All Organisms → cellular organisms → Bacteria	2924	Open in IMG/M
3300012354\|Ga0137366_11068907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	557	Open in IMG/M
3300012361\|Ga0137360_10207757	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1588	Open in IMG/M
3300012469\|Ga0150984_109065210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	836	Open in IMG/M
3300012895\|Ga0157309_10073717	All Organisms → cellular organisms → Bacteria → Acidobacteria	896	Open in IMG/M
3300012907\|Ga0157283_10410467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	506	Open in IMG/M
3300012923\|Ga0137359_11532417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	554	Open in IMG/M
3300012985\|Ga0164308_10815202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	815	Open in IMG/M
3300012988\|Ga0164306_10135962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1656	Open in IMG/M
3300013096\|Ga0157307_1177478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300013306\|Ga0163162_13139347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	530	Open in IMG/M
3300013770\|Ga0120123_1124272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	601	Open in IMG/M
3300014968\|Ga0157379_11500557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	656	Open in IMG/M
3300014969\|Ga0157376_11380339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	736	Open in IMG/M
3300015077\|Ga0173483_10303431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	783	Open in IMG/M
3300015241\|Ga0137418_10269963	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300015357\|Ga0134072_10370668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	556	Open in IMG/M
3300015373\|Ga0132257_100284881	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1981	Open in IMG/M
3300015373\|Ga0132257_100535519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1441	Open in IMG/M
3300015374\|Ga0132255_101969886	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	889	Open in IMG/M
3300017792\|Ga0163161_12012463	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	514	Open in IMG/M
3300018051\|Ga0184620_10328710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	517	Open in IMG/M
3300018061\|Ga0184619_10002845	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6319	Open in IMG/M
3300018075\|Ga0184632_10352168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	629	Open in IMG/M
3300018076\|Ga0184609_10546357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	523	Open in IMG/M
3300018081\|Ga0184625_10075583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1717	Open in IMG/M
3300018081\|Ga0184625_10425763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	682	Open in IMG/M
3300018465\|Ga0190269_11761202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	526	Open in IMG/M
3300018482\|Ga0066669_11637204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	589	Open in IMG/M
3300019868\|Ga0193720_1000272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6349	Open in IMG/M
3300019869\|Ga0193705_1054884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	814	Open in IMG/M
3300019872\|Ga0193754_1010803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	951	Open in IMG/M
3300019879\|Ga0193723_1108573	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300019883\|Ga0193725_1113586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	626	Open in IMG/M
3300019886\|Ga0193727_1021861	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2279	Open in IMG/M
3300019886\|Ga0193727_1107513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	814	Open in IMG/M
3300019997\|Ga0193711_1029645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	686	Open in IMG/M
3300019998\|Ga0193710_1031283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	537	Open in IMG/M
3300020002\|Ga0193730_1153970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	605	Open in IMG/M
3300020004\|Ga0193755_1004019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4691	Open in IMG/M
3300020015\|Ga0193734_1050247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	767	Open in IMG/M
3300021344\|Ga0193719_10410864	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300022534\|Ga0224452_1167633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300022694\|Ga0222623_10410175	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	514	Open in IMG/M
3300025271\|Ga0207666_1072405	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300025901\|Ga0207688_10543845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	729	Open in IMG/M
3300025904\|Ga0207647_10225205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1080	Open in IMG/M
3300025912\|Ga0207707_10428597	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300025918\|Ga0207662_10355186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	985	Open in IMG/M
3300025918\|Ga0207662_11283407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	520	Open in IMG/M
3300025921\|Ga0207652_10907336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	778	Open in IMG/M
3300025925\|Ga0207650_11519851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300025927\|Ga0207687_11304732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	624	Open in IMG/M
3300025928\|Ga0207700_11685338	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300025930\|Ga0207701_11299284	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	596	Open in IMG/M
3300025938\|Ga0207704_10674947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	853	Open in IMG/M
3300025941\|Ga0207711_11529101	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300025944\|Ga0207661_11926798	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	537	Open in IMG/M
3300025961\|Ga0207712_11877142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	537	Open in IMG/M
3300026075\|Ga0207708_10626457	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300028784\|Ga0307282_10287060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	793	Open in IMG/M
3300028799\|Ga0307284_10273639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	675	Open in IMG/M
3300030945\|Ga0075373_11628092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	669	Open in IMG/M
3300030966\|Ga0075383_10706185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300031114\|Ga0308187_10436512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	525	Open in IMG/M
3300031231\|Ga0170824_115537033	Not Available	548	Open in IMG/M
3300031469\|Ga0170819_14828794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300031854\|Ga0310904_11321730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300034115\|Ga0364945_0115168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	794	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.70%
Host-Associated	Host-Associated	23.30%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.93%
Plants	Host-Associated → Plants	22.33%
Aquatic	Environmental → Aquatic	7.77%
Human	Host-Associated → Human	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.59%
Sediment	Environmental → Aquatic → Sediment	7.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.77%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%
Digestive System	Host-Associated → Human → Digestive System	0.97%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.28%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030966	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA3_00004900	2170459023	Grass Soil	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
JGI11643J12802_111897461	3300000890	Soil	GGLEAAVVAVAELLLVSGSGVKELTVAVLLIAVPSATEQFTLATRVMVSDWPEVRVANVTVRLLPKPPQTPPPVEEHETKVVSAGRSSVTVTDCAVTGPLFVTSIV*
Ga0062593_1031710351	3300004114	Soil	TVTFTILWFGGQRVDGSAVAPVIVGGGLEAVAVAVAELLFGSGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLLVTVTV*
Ga0062589_1022316101	3300004156	Soil	VTFTILWFGGQRVDGSAVALAMVGGGLEAVVVSVAELLDVSGSGVKELTEAVLLMAVPSATEQFTLATKVMVSDCPEVSNGNVTLRLFPEPPQTPPPVEAHETKVVSEGRLSVTVTDVAASGPLLVTVTV*
Ga0062595_1010340252	3300004479	Soil	LTILWFGGHRLDGSAIASVMVGGGLEAVVVAVAELLAKSGSGVKELTVAVLLIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHETKVVSGGRLSVTVTDVAAS
Ga0058859_115493062	3300004798	Host-Associated	VIVGGGLEAVAVAVAELLFGSGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDARSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLLVT
Ga0070687_1007973462	3300005343	Switchgrass Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQIPLPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV*
Ga0070710_110670981	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VMVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV*
Ga0070665_1001280421	3300005548	Switchgrass Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDVAGSGPLL
Ga0066903_1089024511	3300005764	Tropical Forest Soil	MPVITGGGLDAVVVAVAELLVVSGSGVKEVTVAVLLIVVPSATEQFTLATRVMVSDWPDARDANVTVRSLFEPPQTPPPVEEHDTKVVSAGRVSVTVTDVAASGPLFVTVSV*
Ga0066652_1015817691	3300006046	Soil	MDGSVVALVIIGAGLETVVVAVAESLVVSGSGVKELTVAVLFITVPSGTEQFTLATKVMVSDWPDARDANVTIGLLPDPLQTPPPVEEHETKVVSAGRLS
Ga0070716_1012884221	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	HKLDGSAVALVIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVGRLSVTVTEVAVSGPLLVTVTV
Ga0097621_1023462421	3300006237	Miscanthus Rhizosphere	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVGR
Ga0105245_111268771	3300009098	Miscanthus Rhizosphere	MAGGGLEAVVVAVAELLAKSGSGVKELTVAVLLIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEEHETNVVSGGRLSVTVTDVAASGPLLVTVTV*
Ga0075418_131536601	3300009100	Populus Rhizosphere	IVGGGLDAVVVAVDELLFKSGSGVKELTVAVLLISVPSATEQFTLATKVMVSDCPDARDANVTVRLLFEPLQTPPPVEEHETKVVSAGRLSVTLIDVAASGPLFVTVTV*
Ga0066709_1002832315	3300009137	Grasslands Soil	MGGGLEAVVVVVAESLVVLGSRLEALTVAVLLITVPSTTEQFTLATRVMVSVSPDASDANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVK
Ga0105243_111646501	3300009148	Miscanthus Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQLTLATKVMVSDAPDGRSANVTVRLLPDPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV*
Ga0105243_125273001	3300009148	Miscanthus Rhizosphere	TFTILWFGGQRVDGSAVAPVIVGGGLEAVAVAVAELLFGSGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLLVTVTV*
Ga0105249_108612682	3300009553	Switchgrass Rhizosphere	MVGGGLDAVVVAVAELLVGSGSGVKELTVAVLLISVPSATEQFTLATNVMVSDWPEASDANVTVRLLFEPLQTPPPVEEHDTKVVSAGRLSVTATDVAASGPLFVTVSV*
Ga0105249_121479891	3300009553	Switchgrass Rhizosphere	VIVGGGLDAVVVADAELLARSGSGVKELTVAVLLISVPSATEQFTLATNVMVSDWPDARDANVTVRLLFEPLQTPPPVEEQDTKVV
Ga0126380_114997651	3300010043	Tropical Forest Soil	VIVGGELDAVVVAVAELLFRSGSGVKEVTVAVLLIAVPSATAQFTLATKVMVSDCPDARDANVTVRLLFEPIQTPPPVEEHETKVVSAGRLSVTLTDVAASGPLFVTVTV*
Ga0134080_105115802	3300010333	Grasslands Soil	MTGGGFETVTFAVAELLFVPGSGVDELIDAVLLIVAPFATVQFTLATRVMLADALDASEAKVTVRLLPVPPQTPPPVEEHETKV
Ga0126379_128384631	3300010366	Tropical Forest Soil	IVGAGLETVVVAVAESLVVSGSGVKELTVAVLFIVVPSATEQLTFATRVIVSDWPDARDANVTIWLLPEPLHTPPPVEEHETKVVSAGRLSVTVTEVAVSGPLLVTVTV*
Ga0134128_112759841	3300010373	Terrestrial Soil	MVGGGLEAVVVAVAELLAKSGSGVKELTVAVLLIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHETKVVSGGRLSVTVTDVAAS
Ga0126381_1007720853	3300010376	Tropical Forest Soil	VIVGGGLEAVVVAVLESLFELGSGVEELTVAVLLIIVPSATEQFTLATKVMVSDSPELSSGNVTVRLFPEPAQTPSPVEEHETKVVSAGRLSVTTTDVAGSGPLL
Ga0137364_103205512	3300012198	Vadose Zone Soil	VIVGGGFEAVAVAVAELLFELGSGVEEFTVAVLLITVPSATEQFTVATKVMVSDSPAAKDANVTVRLFPEPLQTPPPVEKHETKVVSAGRLSVTVTDVAVAGPLLVTVTV*
Ga0137364_105007821	3300012198	Vadose Zone Soil	LTVTSTSLWFGGHSTDGFADAPLIVGGGLDAVVVAVAELLFELGSGVEELTVAVLLITVPSATEQFTVATKVMISDSPAARDANVTVRLFPEPLQTPPPVEKHETKVVSAGRLSV
Ga0137383_103804342	3300012199	Vadose Zone Soil	VIVGGGLEAVVVAVAELLVVSGSGVKELTVAVLLITVPSATEQFTVATKVMVSDSPDAKDANVTVRLFPEPPQTPPPVEEHETKVVSAGRLSVTVTDCAGSGPLLVTV
Ga0137399_102474321	3300012203	Vadose Zone Soil	MRLWLGGHNVVVATLHVTNGGGLEAVTAFVEELLLESLSGVDELMVAVLLIIVPLATEQSTVATRVIVSDAPEASEEKVTVRLLPDPPHTPLPVEAHETK
Ga0137399_110669831	3300012203	Vadose Zone Soil	MAGGGLDAVVVAVAESLVVSGSGVEELTVAVLLITVPSATEQFTLATKVMVSVSPDARDANVTVRLFPEPPQTPPPVEEQETKAVSAGRLSVTVTDIAVSGPLLVTVTVYVRLFPTVTGSGESVLVMERS
Ga0137362_100186537	3300012205	Vadose Zone Soil	VITGGGLEAVVVVVAELLVVLGSSVAEFTVAVLFITVPSTTEQFTLATRVMVSVSADASDANVIVRLLPEPPQTPPPVDQQETKVVSAGR*
Ga0137381_114518001	3300012207	Vadose Zone Soil	VIVGGGLETVVVAVAELLFVLGSDVEELTFAVLLITVPSVTEQFTVATKVMVSDPPDARDANVTVRLLHESPQTPPPVEEHETKVVSAGRLSVTVTDCAVTGPLFVTSIV*
Ga0137377_106954341	3300012211	Vadose Zone Soil	VIVGGGLEAVVVAVIELLFELGSGIEELTVAVLLITVPSATEQFTEATKVMVSDPPDARDANVTVRLFPEPLQTPPPVEEHETKVVEAGRLSVTVTDVAVFGPLLVTVTV*
Ga0137370_101388123	3300012285	Vadose Zone Soil	VIVGGGFEAVAVAVAELLFELGSGVEEFTVAVLLITVPSATEQFTVATKVMVSDSPAAKDANVTVRLFPEPLQTPPPVEKHETKVVSAGRLSVTVTDVAVFGPLLVTV
Ga0137367_100570214	3300012353	Vadose Zone Soil	VITGGGLEAVVVAVEELLLGSGSGVEESTVAVLLMTVPSATEQFTLATKVMVSDSPDVRDANVTVRLFPEPPQTPPPVEEHETKVVSAGRLSVTI
Ga0137366_110689071	3300012354	Vadose Zone Soil	PVIVGGGLEAVVVAVAELLFESGSSVEELTVAVLLITVPSATEQFTVATKVMVSDSPAVRDANVTVRLLPEPPQTPPPVEEHETKVVSAGRLSVTVTDVAVFGPLLVTVTV*
Ga0137360_102077572	3300012361	Vadose Zone Soil	VITGGGLEAVVVVVAELLVVLGSNVEEFTVAVLLITVPSTTEQFTLATRVMVSVSADASDANVIVRLLPEPPQTPPPVDQQETKVVSAGR*
Ga0150984_1090652103	3300012469	Avena Fatua Rhizosphere	MIGGGLEAVAVAVAELLLGSGSGVEELAVAVLLITVPSATEQLTLATKVIVPDAPDGRSANVTVRLLPEPPQTPPPVEEHETKVVSSGRLSVTVTDVAGSGPLL
Ga0157309_100737173	3300012895	Soil	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVG
Ga0157283_104104672	3300012907	Soil	MVGGGLEAVVVAVAELLFELGSGVEELAVAVLLITVPSATEQFTVATKVMVSDSPDARDANVTVWLLAEAPQSSPPVEEHETKVVLAGRLSVTVTDAAV
Ga0137359_115324171	3300012923	Vadose Zone Soil	MVGGGLEAVAVAVAELLIGSGSEVEELTVAVLLITVPPATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDVAGS
Ga0164308_108152021	3300012985	Soil	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV*
Ga0164306_101359621	3300012988	Soil	MVGGGLEAVVVVVEELLVVSGSNVRELTVAVLLITVPSATEQFTFATKVMVSDWPDARDANVTVWLLPEPPQTPPPVEEQETKVVSGGRLSVT
Ga0157307_11774781	3300013096	Soil	ASVMVGGGLEAVVVAVAELLAKSGSGVKELTVAVLLIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHETKVVSGGRLSVTVTDVAASGPLFVTVTV*
Ga0163162_131393471	3300013306	Switchgrass Rhizosphere	MVGGGLEAVVVAVAELLAKSGSGVKELTVAVLLIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHETKVVSGGRLSVTVTDVAASGPL
Ga0120123_11242721	3300013770	Permafrost	VIVGGGLDAVVVAVAELLAGSGSGVKELTVAVLLISVPSATEQFTLATKVMVSDWPDARDANVTVRLLFEPLQTPPPVEEQDTKVVSAGRLSVTVTDVAASGPLFVTVTV*
Ga0157379_115005572	3300014968	Switchgrass Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVT
Ga0157376_113803392	3300014969	Miscanthus Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQLTLATKVMVSDAPDGRSANVTVRLLPDPPQNPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV*
Ga0173483_103034311	3300015077	Soil	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQDTKVVSVGRLSVTVTEVAVSGPLLVTVTV*
Ga0137418_102699633	3300015241	Vadose Zone Soil	MVGGGLEAVVVAVAELLVVLGSGVEELTVAVLLITVPLATEQFTVATKDMVSDSPDARDANVTVRSLPEPPQTPPPVEEHETKVVSAGRLSVTVTCLLRRPLSHALRQGEESET
Ga0134072_103706682	3300015357	Grasslands Soil	MGGGLEAVVVVVAESLVVLGSRLEALTVAVLLITVPSTTEQFTLATRVMVSVSPDASDANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVKITDVAGYGPLFVTITV*
Ga0132257_1002848811	3300015373	Arabidopsis Rhizosphere	VIVGGGLEAVAVAVAELLFGPGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLL
Ga0132257_1005355192	3300015373	Arabidopsis Rhizosphere	VIVGGGLEAVVVVVEELLVGSGSNVKALTVAVLLITVPSATEQFTEATKVMVSDPPEVRDANVTVRLFPEPPQTPPPVEAHETKVVSAGRLSVTITDVAVSGPLLVTVTV*
Ga0132255_1019698861	3300015374	Arabidopsis Rhizosphere	VIVGGGLEAVVVVVEELLVGSGSNVKALTVAVLLITVPSATEQFTEATKVMVSDPPEVRDANVTVRLFPEPPQTPPPVEAHETKVVSAGRLSVTITDVAVS
Ga0163161_120124632	3300017792	Switchgrass Rhizosphere	PVIVGGGLEAVAVAVAELLFGSGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLLVTVTV
Ga0184620_103287102	3300018051	Groundwater Sediment	VIVGGGLEAVVVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDVAG
Ga0184619_100028458	3300018061	Groundwater Sediment	VIVGGGLEAVVVAVAELLARSGSGVKELTVAVLLIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHETKVVS
Ga0184632_103521682	3300018075	Groundwater Sediment	VIVGGGLEAVVVAVAELLAKSGSGVKELTVAVLIIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHET
Ga0184609_105463571	3300018076	Groundwater Sediment	LTATFTSLWFGGHSTDGFANAPVIVGGGLDAVVVAVAELLFKLGSNVKVLTVAVLLITVPSATEQFTVATKVMVSDPPEVRDANVTVRLLPEPPQIPPPVEEHETKVVSAGRLSVTVTDVAGSGPLLVTVTV
Ga0184625_100755831	3300018081	Groundwater Sediment	VVVAVAELLLRSGSNVKALTVAVLLIAVPSATEQFTLATKVMVSDSPDVRDANVTVRLFPDPPQTPPPVEEHETKVVSVGRFSVTITDVAGSGPLLVTVTV
Ga0184625_104257631	3300018081	Groundwater Sediment	VIVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLL
Ga0190269_117612021	3300018465	Soil	VIVGGGLEAVVVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGR
Ga0066669_116372041	3300018482	Grasslands Soil	VTSYLTVTFTILWFGGHRTDGSAAVPVIMGGGLEAVVVVVAESLVVLGSRLEALTVAVLLITVPSTTEQFTLATRVMVSVSPDASDANVTVRLLPEPPQTPPPVEEQE
Ga0193720_10002722	3300019868	Soil	MVGGELEAVVVAVAELLAKSGSGVKELTVAVLLIAVPSATEQFTLATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHETKVVSGGRLSVTVTDVAASGPLFVTVTV
Ga0193705_10548841	3300019869	Soil	VIVGGGLEAVVVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
Ga0193754_10108032	3300019872	Soil	VTVGGGLEAVAVAVLESLFGLGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGR
Ga0193723_11085731	3300019879	Soil	MYDHFRGQELVHCCGHRTDGSAAAPVIVGGGLDAVEVAVAELLVGSGSSAQELTVAVLLITVPSATEQFTVATKVMVSDSPDVRDANVTVRLFPEPPQTPPPVEEHETKVVSAGRLSVTITDVAGSGPLFITVTV
Ga0193725_11135862	3300019883	Soil	MVGGGLDAVAVAVAELLIGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGG
Ga0193727_10218611	3300019886	Soil	VIAGGGLEAVVVVVEELLVVSGSNVRELTVAVLLITVPSATAQLTLATKVMVSDWPDARDANVTIWLLPEPPQTPPPVEEQETKVVSAGRLSVTVTEVAVSGP
Ga0193727_11075132	3300019886	Soil	VTVGGGLEAVAVAVLESLFGLGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDV
Ga0193711_10296452	3300019997	Soil	VIVGGGLEAVVVVVEELLVVSGSNVRELTVAVLLITVPSATEQLTLATKVMVSDWPDARDANVTIWLLPEPPQTPPPVEEHETKVVSAGRLSVTVTEVAVSGPLLVTVTV
Ga0193710_10312831	3300019998	Soil	DGFAVAPVIVGGGLEAVVVVVEELLVVSGSNVRELTVAVLLITVPSATEQLTLATKVMVSDWPDARDANVTIWLLPEPPQTPPPVEEHETKVVSAGRLSVTVTEVAVSGPLLVTVTV
Ga0193730_11539702	3300020002	Soil	VIVGGGLEAVVVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPL
Ga0193755_10040195	3300020004	Soil	VIVGGGLEAVVVVVEELLVVSGSNVRELTVAVLLITVPSATEQLTLATKVMVSDWPDARDANVTIWLLPEPPQTPPPVEEHETKVVSAGRLSVTVTDVAVSGPLLVTVTV
Ga0193734_10502472	3300020015	Soil	VARDSYGFAVAPVIVGGGLEAVVVVVEELLVVSGSNVRELTVAVLLITVPSATEQLTLATKVMVSDWPDARDANVTIWLLPEPPQTPPPVEEHETKVVSAGRLSVTVTDVAVSGPLLVTVTV
Ga0193719_104108641	3300021344	Soil	LWFGGHSTDGFADTPVIVGGGLEAVVVAVAELLFKLGSNVKALTVAVLLITVPSATEQFTVATKVMVSDSPDARDANVTVWLFPEPLQSPLPVEKQETKVVSGGRSSVTVTDVAGSGPLLVTVTV
Ga0224452_11676331	3300022534	Groundwater Sediment	VITGGALEAVVVAVAELLAVSGSGVKELTVAVLLITVPSATEQFTVATKVMLSDSPDARDANVTVRLLPEPPQTPPPVEEHETKVVS
Ga0222623_104101751	3300022694	Groundwater Sediment	ILWFGGQRLDGSAVALVIVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
Ga0207666_10724051	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVGRLSVTVTEV
Ga0207688_105438451	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VAPVIVGGGLEAVAVAVAELLFGSGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLL
Ga0207647_102252052	3300025904	Corn Rhizosphere	TDGSAVALVMVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLLVTVTV
Ga0207707_104285973	3300025912	Corn Rhizosphere	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVGRLSV
Ga0207662_103551862	3300025918	Switchgrass Rhizosphere	VIVGGGLEAVAVAVAELLFGSGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLLVTVTV
Ga0207662_112834071	3300025918	Switchgrass Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQIPLPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
Ga0207652_109073362	3300025921	Corn Rhizosphere	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVGRLSVTVTEVAVSGPL
Ga0207650_115198511	3300025925	Switchgrass Rhizosphere	TFTILWFGGHKLDGSAVALVIVGGGLETVVGAVEELLLVSGSGVIEFTVAVLFIIVPSAIEQFTLATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVGRLSVTVTEVAVSGPLLVTVTV
Ga0207687_113047322	3300025927	Miscanthus Rhizosphere	MVGGGLEAVAVAVAELLFGSGSGVEELAVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVAGSGPLLV
Ga0207700_116853381	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETK
Ga0207701_112992841	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDV
Ga0207704_106749473	3300025938	Miscanthus Rhizosphere	MVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQLTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSAGRLSVTVTDVA
Ga0207711_115291011	3300025941	Switchgrass Rhizosphere	VIVGGGLETVVGAVAELLLVSGSGVIEFTVAVLFITVPSAIEQFTVATKVIVSDWPEARDANVTIWLLPEPPQTPPPVEEQETKVVSVGRLSVTVTEVAVSGPLLVTVTV
Ga0207661_119267981	3300025944	Corn Rhizosphere	MVGGGLEAVVVAVAELLAKSGSGVKELTVAVLLIAVPSATEQFTFATKVMVSDCPEVSNGNVTVRLLPEPPQTPPPVEAHETKVVSGGRLSVTVTDVAASGPLFVT
Ga0207712_118771421	3300025961	Switchgrass Rhizosphere	GGQRTDGSAVASVIVGGGLDAVVVADAELLARSGSGVKELTVAVLLISVPSATEQFTLATNVMVSDWPDAREANVTVRLLFEPLQTPPPVEEQDTKVVSAGRLSVTVTDVAASGPLFVTVTV
Ga0207708_106264572	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	DGSAVALVMVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQIPLPVEEQETKVVSGGRLSVTETDVAGSGPLLVTVTV
Ga0307282_102870602	3300028784	Soil	VIVGGGLEAVVVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSG
Ga0307284_102736391	3300028799	Soil	VIVGGGLEAVVVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVT
Ga0075373_116280922	3300030945	Soil	VIVGGGLETVVGAVAESLVVSGSGVKEFTVAVLLITVPSETEQLTLATKVMVSDWPDARDANVTIWLLPEPPQTPPPVEEHETKVVSAGRLSVTVTDVAASGPLLVT
Ga0075383_107061851	3300030966	Soil	VMVGGGLEAVAVAVAELLIGSGSGVEELTVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
Ga0308187_104365121	3300031114	Soil	VIVGGGLEAVVVVVEELLVVSGSNVRELTVAVLLITVPSATEQFTEATKVMVSDSPDVRDANVTVRLFPEPPQTPPPVEEQETKVVSAGRSSVRVTDVDGSGPLF
Ga0170824_1155370331	3300031231	Forest Soil	HPQQHQLAGVHVRIAVVGLVRVDAVVVAVAESLFGSGSDVEELTVAVLLIAVPSTTEQFTLATKVMLSDSPAARAANVTVRLLSEPSQTPPPVDEQETKVVSAGRLSVTVTDVAVSGPLLVIVSV
Ga0170819_148287941	3300031469	Forest Soil	ASPVMVGGGLEAVAVAVAELLIGSGSGVEELTVAVLLITVPSATEQFTLATKVMVPDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
Ga0310904_113217302	3300031854	Soil	ALVIVGGGLEAVAVAVLESLFGSGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPLPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV
Ga0364945_0115168_411_752	3300034115	Sediment	VAFVIVGGGLEAVAVAVLESLIGLGSGVEELTVAVLLITVPSATEQFTLATKVMVSDAPDGRSANVTVRLLPEPPQTPPPVEEQETKVVSGGRLSVTVTDVAGSGPLLVTVTV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099724

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences