Metagenome / Metatranscriptome Family F099682

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099682
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	47 residues
Representative Sequence	GPRAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLYLVGP
Number of Associated Samples	81
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.85 %
% of genes near scaffold ends (potentially truncated)	95.15 %
% of genes from short scaffolds (< 2000 bps)	88.35 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.369 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.155 % of family members)
Environment Ontology (ENVO)	Unclassified (33.981 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.136 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.62% β-sheet: 13.70% Coil/Unstructured: 50.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01569	PAP2	4.85
PF02518	HATPase_c	1.94
PF13281	MAP3K_TRAF_bd	1.94
PF07045	DUF1330	0.97
PF08388	GIIM	0.97
PF03404	Mo-co_dimer	0.97
PF08031	BBE	0.97
PF13484	Fer4_16	0.97
PF01547	SBP_bac_1	0.97
PF01526	DDE_Tnp_Tn3	0.97
PF10012	DUF2255	0.97
PF11848	DUF3368	0.97
PF04955	HupE_UreJ	0.97
PF03466	LysR_substrate	0.97
PF02653	BPD_transp_2	0.97
PF13411	MerR_1	0.97
PF03734	YkuD	0.97
PF00561	Abhydrolase_1	0.97
PF04166	PdxA	0.97
PF01925	TauE	0.97
PF01063	Aminotran_4	0.97
PF00923	TAL_FSA	0.97
PF08751	TrwC	0.97
PF07228	SpoIIE	0.97
PF00174	Oxidored_molyb	0.97
PF13302	Acetyltransf_3	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.94
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	0.97
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.97
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.97
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1995	4-hydroxy-L-threonine phosphate dehydrogenase PdxA	Coenzyme transport and metabolism [H]	0.97
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.97
COG2370	Hydrogenase/urease accessory protein HupE	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.97
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.97
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.97
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.37 %
Unclassified	root	N/A	45.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.37 %
Unclassified	root	N/A	45.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.37 %
Unclassified	root	N/A	45.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	12.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	3.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.97 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3.88 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.94 %
Cellvibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae	0.97 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.97 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.97 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.97 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.97 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	3.88 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.97 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.97 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.97 %
Vibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio	0.97 %
Sessilibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Sessilibacter	0.97 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
Haloferula	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula	0.97 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.97 %
Sessilibacter corallicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Sessilibacter → Sessilibacter corallicola	0.97 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.97 %
Vibrio ezurae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio ezurae	0.97 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.97 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.97 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.97 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.97 %
Haloferula luteola	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula → Haloferula luteola	0.97 %
Rhizobium sullae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	0.97 %
Verrucomicrobium spinosum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	0.97 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.97 %
Sessilibacter corallicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Sessilibacter → Sessilibacter corallicola	0.97 %
Vibrio ezurae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio ezurae	0.97 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.97 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.63 %
Chthoniobacter flavus Ellin428	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	0.97 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.97 %
Haloferula luteola	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula → Haloferula luteola	0.97 %
Rhizobium sullae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	0.97 %
Verrucomicrobium spinosum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	0.97 %
Sessilibacter corallicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Sessilibacter → Sessilibacter corallicola	0.97 %
Vibrio ezurae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio ezurae	0.97 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.97 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459008\|GA8OVOZ02GI7W7	Not Available	527	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101165236	Not Available	612	Open in IMG/M
3300000550\|F24TB_14185627	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300000955\|JGI1027J12803_101613787	Not Available	965	Open in IMG/M
3300003152\|Ga0052254_1171119	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300004092\|Ga0062389_102543749	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300004152\|Ga0062386_100795580	Not Available	779	Open in IMG/M
3300004152\|Ga0062386_101343870	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300004635\|Ga0062388_102468664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	545	Open in IMG/M
3300005332\|Ga0066388_101057568	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M
3300005437\|Ga0070710_10404097	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300005437\|Ga0070710_10640334	Not Available	744	Open in IMG/M
3300005439\|Ga0070711_100981572	Not Available	724	Open in IMG/M
3300006174\|Ga0075014_100730073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio ezurae	579	Open in IMG/M
3300010339\|Ga0074046_10491845	All Organisms → cellular organisms → Bacteria → PVC group	733	Open in IMG/M
3300010366\|Ga0126379_12668963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula → Haloferula luteola	597	Open in IMG/M
3300010376\|Ga0126381_100116782	All Organisms → cellular organisms → Bacteria	3444	Open in IMG/M
3300012199\|Ga0137383_10326109	Not Available	1124	Open in IMG/M
3300012203\|Ga0137399_10036565	All Organisms → cellular organisms → Bacteria	3445	Open in IMG/M
3300012205\|Ga0137362_10658631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	901	Open in IMG/M
3300012211\|Ga0137377_10503382	Not Available	1149	Open in IMG/M
3300012362\|Ga0137361_11807745	Not Available	529	Open in IMG/M
3300012955\|Ga0164298_10658137	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300012958\|Ga0164299_10788742	Not Available	676	Open in IMG/M
3300012989\|Ga0164305_10981088	Not Available	716	Open in IMG/M
3300016270\|Ga0182036_10268263	Not Available	1285	Open in IMG/M
3300016270\|Ga0182036_10444947	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300016270\|Ga0182036_10777467	Not Available	779	Open in IMG/M
3300016294\|Ga0182041_10045713	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	2928	Open in IMG/M
3300016294\|Ga0182041_10498349	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300016294\|Ga0182041_11309747	Not Available	663	Open in IMG/M
3300016294\|Ga0182041_11497901	Not Available	621	Open in IMG/M
3300016319\|Ga0182033_10004992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	7051	Open in IMG/M
3300016341\|Ga0182035_10588943	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300016341\|Ga0182035_11858914	Not Available	546	Open in IMG/M
3300016387\|Ga0182040_10107956	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300016422\|Ga0182039_11601444	Not Available	594	Open in IMG/M
3300016445\|Ga0182038_10735706	Not Available	861	Open in IMG/M
3300017924\|Ga0187820_1246207	All Organisms → cellular organisms → Bacteria → PVC group	572	Open in IMG/M
3300018078\|Ga0184612_10271680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	873	Open in IMG/M
3300019257\|Ga0180115_1321283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	660	Open in IMG/M
3300020579\|Ga0210407_10310024	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300021168\|Ga0210406_11156241	Not Available	566	Open in IMG/M
3300021170\|Ga0210400_11588433	Not Available	516	Open in IMG/M
3300021171\|Ga0210405_10142160	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300021181\|Ga0210388_11217350	Not Available	638	Open in IMG/M
3300021372\|Ga0213877_10001122	All Organisms → cellular organisms → Bacteria	5414	Open in IMG/M
3300021401\|Ga0210393_11110788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300021420\|Ga0210394_10998100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	725	Open in IMG/M
3300021432\|Ga0210384_10332108	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300021439\|Ga0213879_10193367	Not Available	603	Open in IMG/M
3300021475\|Ga0210392_11061886	Not Available	607	Open in IMG/M
3300021478\|Ga0210402_10111848	All Organisms → cellular organisms → Bacteria	2461	Open in IMG/M
3300021478\|Ga0210402_11497504	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	602	Open in IMG/M
3300022557\|Ga0212123_10763608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300025898\|Ga0207692_10764817	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300025898\|Ga0207692_11183737	Not Available	507	Open in IMG/M
3300025910\|Ga0207684_11036622	Not Available	685	Open in IMG/M
3300025916\|Ga0207663_10851755	Not Available	727	Open in IMG/M
3300025922\|Ga0207646_11360890	Not Available	618	Open in IMG/M
3300025972\|Ga0207668_11491321	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300027546\|Ga0208984_1082427	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	695	Open in IMG/M
3300027812\|Ga0209656_10410511	All Organisms → cellular organisms → Bacteria → PVC group	605	Open in IMG/M
3300027824\|Ga0209040_10283303	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300027824\|Ga0209040_10445772	Not Available	590	Open in IMG/M
3300027825\|Ga0209039_10248142	All Organisms → cellular organisms → Bacteria → PVC group	711	Open in IMG/M
3300028592\|Ga0247822_10860151	Not Available	742	Open in IMG/M
3300030058\|Ga0302179_10003544	All Organisms → cellular organisms → Bacteria	8980	Open in IMG/M
3300030618\|Ga0311354_10361799	All Organisms → cellular organisms → Bacteria → Proteobacteria	1478	Open in IMG/M
3300030842\|Ga0075404_11496256	Not Available	569	Open in IMG/M
3300031231\|Ga0170824_118973102	Not Available	606	Open in IMG/M
3300031234\|Ga0302325_10288332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2680	Open in IMG/M
3300031446\|Ga0170820_17072820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	728	Open in IMG/M
3300031708\|Ga0310686_102062279	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	1517	Open in IMG/M
3300031718\|Ga0307474_11162061	Not Available	611	Open in IMG/M
3300031744\|Ga0306918_10981674	Not Available	656	Open in IMG/M
3300031744\|Ga0306918_11461410	Not Available	523	Open in IMG/M
3300031754\|Ga0307475_10526137	Not Available	949	Open in IMG/M
3300031820\|Ga0307473_10040186	All Organisms → cellular organisms → Bacteria	2128	Open in IMG/M
3300031879\|Ga0306919_10701393	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300031890\|Ga0306925_10588882	Not Available	1176	Open in IMG/M
3300031910\|Ga0306923_11178667	Not Available	820	Open in IMG/M
3300031910\|Ga0306923_11795855	Not Available	630	Open in IMG/M
3300031912\|Ga0306921_12157518	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300031942\|Ga0310916_10224889	Not Available	1576	Open in IMG/M
3300031942\|Ga0310916_10710946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Sessilibacter → Sessilibacter corallicola	850	Open in IMG/M
3300031945\|Ga0310913_10547969	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031954\|Ga0306926_10069254	All Organisms → cellular organisms → Bacteria	4266	Open in IMG/M
3300031954\|Ga0306926_10580715	Not Available	1370	Open in IMG/M
3300032076\|Ga0306924_10578046	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300032076\|Ga0306924_11281311	Not Available	788	Open in IMG/M
3300032076\|Ga0306924_11711395	Not Available	659	Open in IMG/M
3300032091\|Ga0318577_10199819	Not Available	956	Open in IMG/M
3300032160\|Ga0311301_12302507	Not Available	613	Open in IMG/M
3300032205\|Ga0307472_100545146	All Organisms → cellular organisms → Bacteria → PVC group	1011	Open in IMG/M
3300032205\|Ga0307472_101730949	Not Available	619	Open in IMG/M
3300032211\|Ga0310896_10852656	Not Available	525	Open in IMG/M
3300032261\|Ga0306920_100182305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	3132	Open in IMG/M
3300032261\|Ga0306920_100431547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1958	Open in IMG/M
3300032261\|Ga0306920_100485071	Not Available	1835	Open in IMG/M
3300032261\|Ga0306920_101232925	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300033289\|Ga0310914_10095844	All Organisms → cellular organisms → Bacteria	2544	Open in IMG/M
3300033289\|Ga0310914_11176392	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Host-Associated	Host-Associated	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.44%
Aquatic	Environmental → Aquatic	13.59%
Plants	Host-Associated → Plants	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.52%
Freshwater	Environmental → Aquatic → Freshwater	10.68%
Peat	Environmental → Terrestrial → Peat	2.91%
Sediment	Environmental → Aquatic → Sediment	1.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.87%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.97%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	52.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.97%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.97%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.94%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.97%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.97%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459008	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003152	Freshwater sediment microbial communities from Loktak Lake, India	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030842	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F48_07597490	2170459008	Grass Soil	YGVANGVMTGIGDPDAFVVYKGKLYLGGNQAALRGFMSEIDSNIDKADTNWRQLTGS
INPhiseqgaiiFebDRAFT_1011652362	3300000364	Soil	AYGVANGITTGTSDPDAFAVYNGKLYICGNQAALKSFKSNIDSNIDKADTNWRRLTGS*
F24TB_141856272	3300000550	Soil	VRWAPNAFAVYKGKLYLGGNQDVLKSFKTNIDSNIEKADTNWRRLTEN*
JGI1027J12803_1016137872	3300000955	Soil	CSYGVANGVITDIEGPEAFAVYNGKLYLCGNQGALKSFKSNIDSNIEKADTN*
Ga0052254_11711192	3300003152	Sediment	AFCAYGVLLGVMADVEGPNAFTVYKGKLYVCGNQTALNGFKSNIDSNIEKADTNWRQLTGP*
Ga0062389_1025437492	3300004092	Bog Forest Soil	TMGVLADLEGPDAFAIYKGRLYLCGNQGALKEFKTDIDSNIVKADTNWRLLAGP*
Ga0062386_1007955802	3300004152	Bog Forest Soil	FAVYRGKLYICGNQEALKAFKSNMDGNIVKADANWRLLAGP*
Ga0062386_1013438702	3300004152	Bog Forest Soil	DGPDAFTVYKGKLYLCGNEGALKVFKSDISSNIEKADTNWLQLAGN*
Ga0062388_1024686641	3300004635	Bog Forest Soil	SYGVANGVLADVDGPDAFAVYKGKLYLCGNEGALKEFKSDIDSNIGKADTNWRKLTGP*
Ga0066388_1010575681	3300005332	Tropical Forest Soil	VYKGKLYLCGDEGALNEFKSDIDSNIVKADTNWLQLVGP*
Ga0070710_104040972	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PNAFTVYKGKLYICGDQSALNGFKSNIDSNIEKADTNWRQLTGP*
Ga0070710_106403341	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLTDPAGLDAFAVYKGKLYLCGSHGALKEFKTNIDSNIEKADTNWRMLAGP*
Ga0070711_1009815721	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	DSFAVYKGKLYLCGDDGALNEFKSDIDSNIEKADKNWLKLVGP*
Ga0075014_1007300731	3300006174	Watersheds	FCAYGVVNGVLSDIGGNPDAFAVYKGKLYLCGNQAALRGFKSNIDSNIEKADTNWRQLTGS*
Ga0074046_104918451	3300010339	Bog Forest Soil	PDAFTVYKGKLYLCGNEGALKVFKSDISSNIEKADTNWLQLPGN*
Ga0126379_126689631	3300010366	Tropical Forest Soil	AFVIHKGKLYLCGNCGNYALKDFKSDIDGNIEKADANWLHLASP*
Ga0126381_1001167821	3300010376	Tropical Forest Soil	ILADIDTASAFAIYKGKLYLCGNEGVLNDFKSDIDSNIEKADANWLHLTGP*
Ga0137383_103261092	3300012199	Vadose Zone Soil	YGVTNGVLADVNGPSAFAVYKGKLYVCGNQASLKSFKSNIDGNIDKADENWRQLVGP*
Ga0137399_100365656	3300012203	Vadose Zone Soil	AFTVYKGKLYVCGNQGGLKGFKNDINGNIDKADENWRRLTGP*
Ga0137362_106586312	3300012205	Vadose Zone Soil	ANIEGPDAFTVYKGKLYFCGNQSALKSFKSDIDSNIEKAGTNWRQLTGP*
Ga0137377_105033822	3300012211	Vadose Zone Soil	AYGVTNGVLADVNGPSAFAVYKGKLYVCGNQASLKSFKSNIDGNIDKADENWRQLVGP*
Ga0137361_118077451	3300012362	Vadose Zone Soil	AVYNGKLYICGNQAALKSFKGNIDSNIEKADTNWRQLTGS*
Ga0164298_106581372	3300012955	Soil	GGFCAYGVVNGILSDVEGNPDACIVYKGKLYLCGNQAALRAFRSNIDSNIEKADTNWRQLTGS*
Ga0164299_107887421	3300012958	Soil	LYICGDQSALNGFKSNIDSNIEKADTNWRQLTGP*
Ga0164305_109810882	3300012989	Soil	PNGVMTGIGDPEAFVVYKGKLYLGGNQAALRGFMSEIDSNIDKADTNWRQLTGS*
Ga0182036_102682631	3300016270	Soil	GPRAFIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0182036_104449473	3300016270	Soil	DLEGPRAFIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0182036_107774673	3300016270	Soil	FIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLNLVGP
Ga0182041_100457131	3300016294	Soil	KGKLYLCGNEGVLNDFKSDIDSNIEKADANWLHLAGP
Ga0182041_104983494	3300016294	Soil	VYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLYLVGP
Ga0182041_113097471	3300016294	Soil	FIIYKGKLYICGNQGALIAFKNGIDGNIDKAEKNWPQLATP
Ga0182041_114979011	3300016294	Soil	DVDGPNAFTVYKGKLYVCGNQTALNGFKSNIDSNIEKADANWRQLTGP
Ga0182033_100049921	3300016319	Soil	TPGAFVLYKGKLYLCGNEGALKAFKSDIDGNIDKADANWERLVAH
Ga0182035_105889431	3300016341	Soil	YKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0182035_118589141	3300016341	Soil	ADLEGPRAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLYLVGP
Ga0182040_101079565	3300016387	Soil	EGPRAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKAYKNWLYLVGP
Ga0182039_116014441	3300016422	Soil	AFIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0182038_107357061	3300016445	Soil	YGVANGVLADLEGPRAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLHLVGP
Ga0187820_12462071	3300017924	Freshwater Sediment	TVYKGKLYLCGNEGALKVFKSDISGNIEKADANWLQLPGN
Ga0184612_102716801	3300018078	Groundwater Sediment	ANGVLANTESPNAFTVYKGKLYLCGNPDALKSFKTNIDSNIGKADTYWRQLTGS
Ga0180115_13212833	3300019257	Groundwater Sediment	DDFEGPGDFIIYKGKLYLCGNQSALEIFKNNIDSNIEKSDTNWRRLTED
Ga0210407_103100241	3300020579	Soil	GVLTDIMGPEAFIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0210406_111562411	3300021168	Soil	LEGPDAFAVYKGRLYLCGNQGALKEFKTNIDSNIVKADTNWRLLAGP
Ga0210400_115884332	3300021170	Soil	PDAFAVYKGRLYLCGNQGALKEFKTNIDSNIVKADTNWRLLAGP
Ga0210405_101421603	3300021171	Soil	FAVYKGKLYLCGNEGALDEFKSDIDGNIEKADTNWLHLVGP
Ga0210388_112173501	3300021181	Soil	FTIYKSKLFLCGNPGALEIFMTNIDSNIDTADANWRQLTGT
Ga0213877_100011221	3300021372	Bulk Soil	YKGKLYVCGNQGALKDFKKDIDSNIDTANANWRQLASQ
Ga0210393_111107881	3300021401	Soil	LNGVLVDAADPGAFAVYKGKLYVCGTQDTMKDFKSNIDANIEKADVNWRQLTAP
Ga0210394_109981001	3300021420	Soil	KGRLYLCGNQAALKEFKTNIDSNIVKADTNWRLLAGP
Ga0210384_103321083	3300021432	Soil	GVLSDPEGPSAFTVYKGKLYVCGNQGGLKSFKNDINGSIDKADENWRRLTGP
Ga0213879_101933671	3300021439	Bulk Soil	PGAFIIYKGKLYVCGNQGALKSFKSELDKNIDSADKNWPQLNGS
Ga0210392_110618861	3300021475	Soil	VEGPDAFAVYKGKLYLCGNEGALDEFKSDIDGNIEKADTNWLHLVGP
Ga0210402_101118481	3300021478	Soil	LASLEEGRPEAFAVYKGKLYLCGNQGALKEFKTNIDSNIEKANANWLVLAGP
Ga0210402_114975041	3300021478	Soil	KAKLYFCGNQTALKSFKSDIDSNIEKADTNWRQLTGP
Ga0212123_107636081	3300022557	Iron-Sulfur Acid Spring	MGVLASLEEGRPEAFAVYKGKLYLCGNQGALKEFKTNIDSNIEKANTNWRVLAGP
Ga0207692_107648172	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PRAFVVYKGKLYLCGDEGALKEFKSDIHSNIEKADKNWLYLVGP
Ga0207692_111837371	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	GPNAFTVYKGKLYICGDQSALNGFKSNIDSNIEKADTNWRQLTGP
Ga0207684_110366222	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MADVDGPNAFTVYKGKLYVCGNQTALNGFKSNIDSNIEKADTNWRQLTGP
Ga0207663_108517551	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	ADLEGPDAFAVYKGRLYLCGNQGALKEFKTNIDSNIEKADANWRLLAGP
Ga0207646_113608902	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LADVDGPSAFAVYKGKLYVCGNQGALKSFKSNIDGNIDKADENWRQLAGP
Ga0207668_114913212	3300025972	Switchgrass Rhizosphere	PDAFAVYKGKLYLCGNQAALRGFRSNIDSNIEKADTNWRQLTGS
Ga0208984_10824273	3300027546	Forest Soil	GVANGVLSDPEGPSAFTVYKGKLYVCANQGGLKSFKNDINGSIDKADENWRRLTGP
Ga0209656_104105111	3300027812	Bog Forest Soil	VLVDTDGPDAFTVYKGKLYLCGNEGALKVFKSDISSNIEKADTNWLQLAGN
Ga0209040_102833032	3300027824	Bog Forest Soil	KLYLCWNQGALKEFKTNIDSNIEKADANWRLLAGP
Ga0209040_104457721	3300027824	Bog Forest Soil	VAMGVLASLEDRPEAFAVYRGKLYICGNQEALKAFKSNMDSNIVKADTNWRLLAVP
Ga0209039_102481421	3300027825	Bog Forest Soil	DAFTVYKGKLYLCGNEGALKVFKSDISSNIEKADTNWLQLPGN
Ga0247822_108601511	3300028592	Soil	KGKLYLCGNQNAVEIFKSNIDSNIAKSDANWRRLTEN
Ga0302179_1000354412	3300030058	Palsa	VTMGVLADLEGPDAFAVYKGRLYLCGNQGALKEFKTNIDSNIEKADTNWRLLAVP
Ga0311354_103617991	3300030618	Palsa	YGVTMGVLADLEGPDAFAVYKGRLYLCGNQGALKEFKTNIDNNIEKADLNWRLLAGP
Ga0075404_114962561	3300030842	Soil	GVLSDLEGGDAFAVYKGKLYLCGNEGVLKEFKTNIDDNIEKADTNWRQLAAP
Ga0170824_1189731021	3300031231	Forest Soil	VMTGIGDPDAFVVYKGKLYLGGNQAALRGFMSEIDSNIDKADTNWRQLTGS
Ga0302325_102883327	3300031234	Palsa	VTMGVLADLEGPDAFAVYKGRLYLCGNQGALKEFKTNIDNNIEKADLNWRLLAGP
Ga0170820_170728201	3300031446	Forest Soil	LCYGVVHGLLSNTEGNPDAFAVYKGKLYLCGSDAALRDFRSNIDSNIEKADTNWRQLTGS
Ga0310686_1020622791	3300031708	Soil	YKGKLYLCGNQGALKEFKTNIDSNIEKADANWRQLAGP
Ga0307474_111620612	3300031718	Hardwood Forest Soil	KLYLCGNQAALKGFKSNIDSNIEKADTNWRQLTGP
Ga0306918_109816741	3300031744	Soil	ADVDGPNAFTVYKGKLYVCGNQTALNGFKSNIDSNIEKADTNWRQLTGP
Ga0306918_114614101	3300031744	Soil	YGVANGVLADLEGPRAFIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0307475_105261371	3300031754	Hardwood Forest Soil	NGKLYVCGNQASLKSFKRNIDSNIDKADTNWRQLTGS
Ga0307473_100401862	3300031820	Hardwood Forest Soil	FGVANGVLTDIMGPEAFIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0306919_107013932	3300031879	Soil	TIYKGKLYLCGNQNALEIFKNNIDTNIDRADTNWRQLTGA
Ga0306925_105888822	3300031890	Soil	MSFIVYKGELYVCGNQGALKSFKSDIDKNIDSADKNWRH
Ga0306923_111786671	3300031910	Soil	NAFTVYKGKLYVCGNQTALNGFKSNIDSNIEKADANWRQLTGP
Ga0306923_117958551	3300031910	Soil	VVYKGKLYLCGNHAALRSFKSNIDSNIDKADTNWRRLTGS
Ga0306921_121575181	3300031912	Soil	VSLGVLADPEGPMSFIVYKGELYVCGNQGALKSFKSDIDKNIDSADKNWRH
Ga0310916_102248891	3300031942	Soil	IVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLHLVGP
Ga0310916_107109462	3300031942	Soil	VSLGVLADPEGPMSFIVYKGKLYVCGNQGALKSFKSDIDKNIDSAEKNWRQLNGS
Ga0310913_105479691	3300031945	Soil	GKLYLCGDEGALKEFKSDIDSNIEKADKNWLYLVGP
Ga0306926_100692541	3300031954	Soil	VMADVDGPNAFTVYKGKLYVCGNQTALNGFKSNIDSNIEKADTNWRQLTGP
Ga0306926_105807151	3300031954	Soil	PRAFIVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0306924_105780461	3300032076	Soil	ADLEGPRAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLNLVGP
Ga0306924_112813112	3300032076	Soil	LYLCGNCGNNVLEDFKSDIDGNIEKADANWLRLAGP
Ga0306924_117113952	3300032076	Soil	PMSFIVYKGKLYVCGNQGALKSFKSDIDKNIDSADKNWRQLNGS
Ga0318577_101998191	3300032091	Soil	VMADVDGPNAFTVYKGKLYVCGNQTALNGFKSNIDSNIEKADANWRQLTGP
Ga0311301_123025072	3300032160	Peatlands Soil	KLYLCGNEGALKVFKSEIDSNIEKADTNWRQLTTR
Ga0307472_1005451463	3300032205	Hardwood Forest Soil	VLANIEGPDAFTVYKGKLYFCGNQSALKSFKSDIDSNIEKAGTNWRQLTGP
Ga0307472_1017309491	3300032205	Hardwood Forest Soil	FEGLGDFIIYKGKLYLNGNQSALEIFKSNIDSNIEKADTNWRRLAED
Ga0310896_108526561	3300032211	Soil	AFAVYKGKLYMCGDQGALRGFRSNIDSNIEKADTNWRQLTGS
Ga0306920_1001823051	3300032261	Soil	NGVLADLDTPGAFVLYKGKLYLCGNEGALKAFKSDIDGNIDNADANWERLVAH
Ga0306920_1004315474	3300032261	Soil	VYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0306920_1004850711	3300032261	Soil	RAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLHLVGP
Ga0306920_1012329252	3300032261	Soil	IVYKGKLYLCGDDGALKEFKSDIDSNIEKADKNWLKLVGP
Ga0310914_100958448	3300033289	Soil	GPRAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLYLVGP
Ga0310914_111763921	3300033289	Soil	DLEGPRAFIVYKGKLYLCGDEGALKEFKSDIDSNIEKADKNWLNLVGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099682

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences