Metagenome Family F099636

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099636
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	76 residues
Representative Sequence	QACQQLRDDLARNRGVPDIPALRRIADHVTAPRMAADARTAVRDIDHTGVAPIALALLRDECARAGVRIPAR
Number of Associated Samples	79
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.16 %
% of genes near scaffold ends (potentially truncated)	88.35 %
% of genes from short scaffolds (< 2000 bps)	82.52 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.553 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.864 % of family members)
Environment Ontology (ENVO)	Unclassified (47.573 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.864 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.00% β-sheet: 0.00% Coil/Unstructured: 49.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.81
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.81
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SCOP family	SCOP domain	Representative PDB	TM-score
a.24.10.4: Sensor-like histidine kinase YojN, C-terminal domain	d1sr2a_	1sr2	0.69661
a.24.25.1: TrmE connector domain	d1xzpa1	1xzp	0.68206
a.24.10.2: Phosphorelay protein-like	d1wn0a1	1wn0	0.66413
f.25.1.1: Cytochrome c oxidase subunit III-like	d1fftc2	1fft	0.65673
a.24.3.2: Cytochrome c'-like	d2ccya_	2ccy	0.6543

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00903	Glyoxalase	6.80
PF08818	DUF1801	5.83
PF13561	adh_short_C2	4.85
PF00278	Orn_DAP_Arg_deC	4.85
PF01243	Putative_PNPOx	2.91
PF02566	OsmC	2.91
PF13230	GATase_4	2.91
PF00583	Acetyltransf_1	1.94
PF13305	TetR_C_33	1.94
PF12681	Glyoxalase_2	1.94
PF03083	MtN3_slv	0.97
PF12680	SnoaL_2	0.97
PF11578	DUF3237	0.97
PF13472	Lipase_GDSL_2	0.97
PF07992	Pyr_redox_2	0.97
PF03814	KdpA	0.97
PF00005	ABC_tran	0.97
PF13522	GATase_6	0.97
PF00248	Aldo_ket_red	0.97
PF01381	HTH_3	0.97
PF12697	Abhydrolase_6	0.97
PF04116	FA_hydroxylase	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	5.83
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	5.83
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	5.83
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	4.85
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	4.85
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	2.91
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	2.91
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	0.97
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.97
COG4095	Sugar transporter, SemiSWEET family, contains PQ motif	Carbohydrate transport and metabolism [G]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	78.64 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	78.64 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	58.25 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.10 %
Unclassified	root	N/A	18.45 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	9.71 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.97 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.10 %
Unclassified	root	N/A	18.45 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	9.71 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.97 %
Dermacoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.10 %
Unclassified	root	N/A	18.45 %
Longimycelium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium	6.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Leekyejoonella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella	0.97 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.10 %
Unclassified	root	N/A	18.45 %
Longimycelium tulufanense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	6.80 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Leekyejoonella antrihumi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	0.97 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.10 %
Unclassified	root	N/A	18.45 %
Longimycelium tulufanense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	6.80 %
Frankia sp. CiP3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. CiP3	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Leekyejoonella antrihumi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	0.97 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_114597652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1304	Open in IMG/M
3300004479\|Ga0062595_102074224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	552	Open in IMG/M
3300004633\|Ga0066395_10803405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300005518\|Ga0070699_102146696	Not Available	510	Open in IMG/M
3300005713\|Ga0066905_101067788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300005764\|Ga0066903_105279747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	683	Open in IMG/M
3300005764\|Ga0066903_106881135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300005841\|Ga0068863_101937863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300005900\|Ga0075272_1012834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1589	Open in IMG/M
3300006028\|Ga0070717_10458011	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300006028\|Ga0070717_10639754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	965	Open in IMG/M
3300006028\|Ga0070717_12089797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300006175\|Ga0070712_101057745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300010358\|Ga0126370_10446677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1077	Open in IMG/M
3300010360\|Ga0126372_10824443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	922	Open in IMG/M
3300010360\|Ga0126372_11150833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	797	Open in IMG/M
3300010360\|Ga0126372_12346261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300010360\|Ga0126372_12427753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300010361\|Ga0126378_10538361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1283	Open in IMG/M
3300010366\|Ga0126379_10232506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1800	Open in IMG/M
3300010366\|Ga0126379_10383318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. CiP3	1448	Open in IMG/M
3300010366\|Ga0126379_10396130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1427	Open in IMG/M
3300010366\|Ga0126379_13805413	Not Available	506	Open in IMG/M
3300010371\|Ga0134125_10638702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1176	Open in IMG/M
3300010376\|Ga0126381_104107614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300010398\|Ga0126383_11473362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300010398\|Ga0126383_12518147	Not Available	599	Open in IMG/M
3300010401\|Ga0134121_11372960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. CiP3	716	Open in IMG/M
3300012211\|Ga0137377_10114628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2564	Open in IMG/M
3300012363\|Ga0137390_10120724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	2595	Open in IMG/M
3300012363\|Ga0137390_11715007	Not Available	562	Open in IMG/M
3300015372\|Ga0132256_101665937	Not Available	747	Open in IMG/M
3300016270\|Ga0182036_11218317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300016270\|Ga0182036_11637783	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300016294\|Ga0182041_10525615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1030	Open in IMG/M
3300016319\|Ga0182033_11394331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	631	Open in IMG/M
3300016387\|Ga0182040_11099148	Not Available	666	Open in IMG/M
3300016422\|Ga0182039_12053149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300018468\|Ga0066662_12541485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300019887\|Ga0193729_1086407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1215	Open in IMG/M
3300020199\|Ga0179592_10181998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	956	Open in IMG/M
3300021171\|Ga0210405_10235595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1449	Open in IMG/M
3300021560\|Ga0126371_10631954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1219	Open in IMG/M
3300021560\|Ga0126371_13662493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	518	Open in IMG/M
3300024347\|Ga0179591_1031521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1740	Open in IMG/M
3300025898\|Ga0207692_10480867	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300025905\|Ga0207685_10244874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	864	Open in IMG/M
3300025905\|Ga0207685_10416316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300025906\|Ga0207699_10462574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	911	Open in IMG/M
3300025916\|Ga0207663_10437593	Not Available	1006	Open in IMG/M
3300025929\|Ga0207664_10072672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2773	Open in IMG/M
3300025929\|Ga0207664_10707328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	906	Open in IMG/M
3300025939\|Ga0207665_10037098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3243	Open in IMG/M
3300027862\|Ga0209701_10660102	Not Available	545	Open in IMG/M
3300031544\|Ga0318534_10223911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1085	Open in IMG/M
3300031546\|Ga0318538_10308843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	852	Open in IMG/M
3300031546\|Ga0318538_10350895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	797	Open in IMG/M
3300031564\|Ga0318573_10088236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1576	Open in IMG/M
3300031564\|Ga0318573_10435993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	705	Open in IMG/M
3300031573\|Ga0310915_10818260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	655	Open in IMG/M
3300031679\|Ga0318561_10333610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	831	Open in IMG/M
3300031713\|Ga0318496_10738156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300031723\|Ga0318493_10086725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1551	Open in IMG/M
3300031723\|Ga0318493_10430268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	724	Open in IMG/M
3300031736\|Ga0318501_10746962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300031747\|Ga0318502_10819535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300031769\|Ga0318526_10041391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1728	Open in IMG/M
3300031769\|Ga0318526_10043815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1686	Open in IMG/M
3300031779\|Ga0318566_10044440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2094	Open in IMG/M
3300031782\|Ga0318552_10027578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2577	Open in IMG/M
3300031798\|Ga0318523_10268405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	852	Open in IMG/M
3300031805\|Ga0318497_10053915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2080	Open in IMG/M
3300031833\|Ga0310917_10955270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300031835\|Ga0318517_10555440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300031879\|Ga0306919_10192007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1513	Open in IMG/M
3300031893\|Ga0318536_10502312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300031897\|Ga0318520_10440254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. CiP3	800	Open in IMG/M
3300031897\|Ga0318520_10443264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	797	Open in IMG/M
3300031897\|Ga0318520_10575477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	699	Open in IMG/M
3300031897\|Ga0318520_10805838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300031910\|Ga0306923_10587392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1252	Open in IMG/M
3300031910\|Ga0306923_11089812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	861	Open in IMG/M
3300031910\|Ga0306923_11537091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	695	Open in IMG/M
3300031954\|Ga0306926_12745576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300032001\|Ga0306922_10175715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2295	Open in IMG/M
3300032008\|Ga0318562_10233667	Not Available	1067	Open in IMG/M
3300032025\|Ga0318507_10027725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2084	Open in IMG/M
3300032043\|Ga0318556_10290923	Not Available	854	Open in IMG/M
3300032044\|Ga0318558_10534544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300032066\|Ga0318514_10666477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300032067\|Ga0318524_10018313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3092	Open in IMG/M
3300032068\|Ga0318553_10216580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	999	Open in IMG/M
3300032089\|Ga0318525_10727407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300032205\|Ga0307472_101770539	Not Available	612	Open in IMG/M
3300033289\|Ga0310914_11486819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	581	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.09%
Host-Associated	Host-Associated	2.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.09%
Plants	Host-Associated → Plants	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.97%
Roots	Host-Associated → Plants → Roots	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.64%
Loam	Environmental → Terrestrial → Soil → Loam	17.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005900	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1145976523	3300000956	Soil	LSKLTDVEACEQLRGSLSRNQGAPDILTLRIIADHVTEPRMAAEARNAVRDIDHTGVATLALALLRDRCARAGVQIRGR*
Ga0062595_1020742242	3300004479	Soil	SAASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP*
Ga0066395_108034052	3300004633	Tropical Forest Soil	GSLSRNQGVPDLLTLRIIADHVTAPRMAAEARNAVRDIDHTGVAAIPIALLRYDCAQAGVQMPHQ*
Ga0070699_1021466961	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ACQLLRDDLSRNGGAPDIPALRKIANHVNAARLAADARTAVRDIAHTGVAPLALALLMDDCDRAGVKIPAP*
Ga0066905_1010677881	3300005713	Tropical Forest Soil	DLARNQGVPDIPTLRRIADHVTAPRMAAYARTAVKDIDHTGVAPVPLELLRDECARIGVPIPGR*
Ga0066903_1052797472	3300005764	Tropical Forest Soil	GAPRPARPDATTPAHFTLTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAPIALGLLRDECARAGVPIPAP*
Ga0066903_1068811351	3300005764	Tropical Forest Soil	RNQGVPDILTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARVGVRMPPR*
Ga0068863_1019378631	3300005841	Switchgrass Rhizosphere	SGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP*
Ga0075272_10128341	3300005900	Rice Paddy Soil	LTPVQACQLLLADVTHHSGTADTTALGHIADRVTAPRMAADARTAVRDIDHTGIAPVALSLLRDDCARAGVHIPPP*
Ga0070717_104580113	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ACRLLRADLTRNRGVPDIPALRRVADHVDAAPRLAADARTAVRDIDHTGVAPLALSLLRDECARSGVPIPAP*
Ga0070717_106397543	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSSAASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP*
Ga0070717_120897972	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	QQLRGSLTRNRGVPDLLTLRIIADHVTEPRMAAEARSAVRDIDHIGVAPLPIALLRDDCARAGVQIPGR*
Ga0070712_1010577451	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP*
Ga0126370_104466772	3300010358	Tropical Forest Soil	SAPFSITRREACRELRDDLARNQGVPDIPMLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIPLALFRDECARAGVRIPAR*
Ga0126372_108244432	3300010360	Tropical Forest Soil	CLQLQGSFARNRGVPDILTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARVGVRMPPR*
Ga0126372_111508332	3300010360	Tropical Forest Soil	QSPAFPDATASAPFSITRLEACRELRDNLARNQGVPDIPMLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIPLALFRDECARAGVRIPAR*
Ga0126372_123462611	3300010360	Tropical Forest Soil	ITRLEACRELRDNLARNQGVPDIPMLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIPLVLFRDECARAGVRIPGY*
Ga0126372_124277532	3300010360	Tropical Forest Soil	GSLSRNQGVPDLLTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPIALLRDDCARAGVRIPGR*
Ga0126378_105383611	3300010361	Tropical Forest Soil	LQLRGSFARNEGVPDILTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARVGVRMPPR*
Ga0126379_102325061	3300010366	Tropical Forest Soil	NRGVPDIPTPRLVADHVTGPRMAADARAAVRDLDHTGVAPLALALLRDDCARAGLPLPAR
Ga0126379_103833181	3300010366	Tropical Forest Soil	DDLARNQGDPDIPMLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIPLALFRDECARAGVRIPAR*
Ga0126379_103961303	3300010366	Tropical Forest Soil	LQLRGSFARNEGVPDILTLRVIADHVTEPRMAAEARSAVRDIDHTGVAAIPVALLRDDCARVGVRMPPR*
Ga0126379_138054131	3300010366	Tropical Forest Soil	SAPQTLTSRQACDLLRDDLARNGGAPDIPALRKVADHVSAARLAADARTAVRDIGHTGVAPLALALLADDCARAGVKILAR*
Ga0134125_106387021	3300010371	Terrestrial Soil	HLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP*
Ga0126381_1041076142	3300010376	Tropical Forest Soil	LRADVRRTRGIPDIRVLRDMADHVSDPRMAADARTAVRDIEHTGHAPVAFMLLRDDCARAGVKIPPS*
Ga0126383_114733622	3300010398	Tropical Forest Soil	LQLRGSFARNRGVPDILTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARVGVRMPPR*
Ga0126383_125181472	3300010398	Tropical Forest Soil	ETLTSRQACRQLRADLARNGGAPDIPALRVIADHVADARLAADARTAVRDIGHTGVAPLALALLEDDCDRAGVKIAAPSSPEPQALA*
Ga0134121_113729602	3300010401	Terrestrial Soil	VFPDATASAPFSLTRLEACRELRDDLARNTGLPDIPMLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIALALLRDECGRAGVRIPRR*
Ga0137377_101146281	3300012211	Vadose Zone Soil	KLTGPQACRLLRGDLARNQGVPDIPTLRRIADHVDAAPRLAADARTAVRDIGHTGVAPLAISLLRDECARAGVPIPPP*
Ga0137390_101207241	3300012363	Vadose Zone Soil	QACERLLADVTRNRGIPDIPALRNIADHVTAPRLAADARTAVRDIGHTGIAPVALTLLRADCAKAGVKIPAP*
Ga0137390_117150071	3300012363	Vadose Zone Soil	QLRDDLARNRGVPDIPALRRIADHVTAPRMASDARTAVRDIDHTGVAPIALALLRDECARAGVRIPAR*
Ga0163163_113644882	3300014325	Switchgrass Rhizosphere	AAVLAAGCTATPAPLPTPAPHPQQQVSSAASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP*
Ga0134072_102327291	3300015357	Grasslands Soil	LARNQGVPDIPTLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIPLALFRGECARAGVRIAGR*
Ga0132256_1016659371	3300015372	Arabidopsis Rhizosphere	LRGSLSRNQGAPDILTLRIIADHVTEPRMAAEARNAVRDIDHTGVAAIPIALLRDRCARAGVQIRGR*
Ga0182036_112183172	3300016270	Soil	PAHVTLTSFQACRQLLADLARNHGVPDITTLRRIADHVTAPRLAADARTAVRDIDHTGAAAIALGLMRDECARAGVPIPAR
Ga0182036_116377831	3300016270	Soil	PDATTPAHFALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAPLALGLLRDECARAGVPIQAP
Ga0182041_105256151	3300016294	Soil	QSPAFPDATTSAPFTLTRLEASRELRDDLARNQGHPDIPMLRRIADHVGAPRMAAYARTAVRDIDHTGVAPIPLALFRDECARAGVRIPAR
Ga0182033_113943311	3300016319	Soil	PPDATTPAHFALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0182040_110991481	3300016387	Soil	QLRGSLSRNQGAPDIVTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0182039_120531492	3300016422	Soil	ACEQLRGSLSRNQGAPDIVTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0066662_125414852	3300018468	Grasslands Soil	SRQAPAFPDATTSAPFTLTRLEACRELRDDLARNQGRPDIPMLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIPLALFRDECGRAGVRIPGR
Ga0193729_10864071	3300019887	Soil	LTGLQACEWLLADVTRNGGIPDIPALRHIADHVTAPRLAADARTAVRDIGHTGIAPVAFTLLRADCAQAGVQVPAP
Ga0179592_101819983	3300020199	Vadose Zone Soil	SPDASASAPLKLTRRQACQQLRDDLARNRGVPDIPALRRIADHVTAPRMAADARTAVRDIDHTGVAPIALALLRDECARAGVRIPAR
Ga0179596_104242252	3300021086	Vadose Zone Soil	ARNRGVPDIPALRRIADHVTAPRMAADARTAVRDIDHTGVAPLALALLRDECARAGVRIPAR
Ga0210405_102355951	3300021171	Soil	TVAAPARLSAVQACRQLLGDLGRNRGVPDIPALRRIADHVTAPRMAADARTAVRDIDHTGTAPIALSLLRDECARAGVRIPDR
Ga0210383_104800443	3300021407	Soil	GTSAPAARPGGTAAAPARLSAVQACRQLLGDLGRNRGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGTAPIALSLLRDECARAGVRIPDR
Ga0126371_106319541	3300021560	Tropical Forest Soil	LRDDLAHNQGDPDIPMLRRIADHVSAPRMAAYARAAVRDIDHTGVAPIPLALFRDECARAGVRIPAR
Ga0126371_136624932	3300021560	Tropical Forest Soil	CRHLLSDVARNGGVPDIPTLRVIADHVTTPRLAADARTAVRDLGHTGIAPLAFALLRADCEHQGVRIPAAQP
Ga0179591_10315213	3300024347	Vadose Zone Soil	QACQQLRDDLARNRGVPDIPALRRIADHVTAPRMAADARTAVRDIDHTGVAPIALALLRDECARAGVRIPAR
Ga0207692_104808671	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	RSPASPDATASAPLKLTRLQACQQLRDDLARNRGVSEIPALRRIADHVTAPRMAADARTAVRDIDHTGVAPIALALLRDECARAGIRIPAR
Ga0207685_102448741	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VSSAASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP
Ga0207685_104163162	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	SSAASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP
Ga0207699_104625741	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PAPHPQQEVSSAASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP
Ga0207693_106774213	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP
Ga0207663_104375931	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP
Ga0207664_100726725	3300025929	Agricultural Soil	QQQVSSAASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP
Ga0207664_107073283	3300025929	Agricultural Soil	CQQLRDDLARNRGVSEIPALRRIADHVTAPRMAADARTAVRDIDHTGVAPIALALLRDECARAGIRIPAR
Ga0207665_100370986	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ASGPLSKPQACQHLLADVTRHQGIPSIPALRRIADHVTEPRMAADARNAVKDIGHTGIAPIPLALLRDDCRRAGVRIPPP
Ga0209701_106601022	3300027862	Vadose Zone Soil	ATTAPVPRTLTRLQACQRLRDDLTRHQGAPDIPTLRLIADHVTAPRLAAEARTAVRDIGHTGIALIAVSLLRDDCARAGVKIP
Ga0318534_102239111	3300031544	Soil	HFALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318538_103088431	3300031546	Soil	SFVRNEGVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPAR
Ga0318538_103508952	3300031546	Soil	LSTLTSVEACLQLRGSFARNRGVPDVLTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARVGVRMPSR
Ga0318573_100882361	3300031564	Soil	VDACEQLRGSLSRNQGAPDIVTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0318573_104359931	3300031564	Soil	ALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318515_103655931	3300031572	Soil	PAPVQQDSPTPALSTLTSVEACLQLRGSFARNQGVPDILTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARAGVRISSR
Ga0310915_108182601	3300031573	Soil	EACLQLRGSFARNRGVPDVLTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARVGVRMPSR
Ga0318561_103336102	3300031679	Soil	VASGNAGDCRELRDDLARSQGVPDIPMLRRIADHVGAPRMAAYARTAVRDIDHTGVAPIPLALFRDECARAGVRIPAR
Ga0318496_107381561	3300031713	Soil	QLRGSFVRNEGVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPAR
Ga0318493_100867251	3300031723	Soil	SKLSNVDACEQLRGSLSRNQGAPDIVTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0318493_104302682	3300031723	Soil	DATTPAHFALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318501_107469621	3300031736	Soil	LQLRGSFVRNEGVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPAR
Ga0318502_108195351	3300031747	Soil	KITSVEACQQLLGSLSRHEGVPDILTLRVIADHVTAPRMAAEARNAVRDIDHTGVAPLPVALLRDDCARAGVRIPGG
Ga0318526_100413911	3300031769	Soil	TTPAHFALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318526_100438151	3300031769	Soil	KLSNVDACEQLRGSLSRNQGAPDIVTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0318566_100444404	3300031779	Soil	SFARNQGVPDVLTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARVGVRMPSR
Ga0318552_100275781	3300031782	Soil	TSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318557_102410231	3300031795	Soil	NQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318523_102684053	3300031798	Soil	RQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318497_100539151	3300031805	Soil	PAHFALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0310917_109552701	3300031833	Soil	AFPDATASAPFSLTRREACRELRDDLARSQGVPDIPMLRRIADHVSAPRMAAYARTAVRDIDHTGVAPIPLALFRDECARAGVRIPAR
Ga0318517_105554402	3300031835	Soil	IEACLQLRGSFVRNEGVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPSR
Ga0306919_101920073	3300031879	Soil	CEQLRGSLSRNQGAPDIVTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0318536_105023122	3300031893	Soil	VTLTSFQACRQLLADLARNHGVPDITTLRQIADHVTAPRLAADARTAVRDIDHTGAAAIALGLMRDECARAGVPIPAR
Ga0318520_104402542	3300031897	Soil	TSAPFTLGRAEACRELRDDLARNQGVPDIPVLRRIADHVGAPRLAAYARTAVRDIDHTGVAPVPLALFRDECARAGVRIPGR
Ga0318520_104432641	3300031897	Soil	SFARNQGVPDILTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARAGVRISSR
Ga0318520_105754772	3300031897	Soil	TLTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318520_108058382	3300031897	Soil	GVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPAR
Ga0306923_105873922	3300031910	Soil	TLTSVEACLQLRGSFARNQGVPDILTLRVIADHVTEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARAGVRISSR
Ga0306923_110898121	3300031910	Soil	FALTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0306923_115370911	3300031910	Soil	TPAHFTFTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRLAADARTAVRDIDHTGAAAIALGLMRDECARAGVPIPAR
Ga0310913_101060031	3300031945	Soil	ALGKLSNVEACEQLRGSLSRNQGAPDILTLRIIADHVTAPRMAAEARSAVRDMDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0306926_127455762	3300031954	Soil	LTSVEACLQLRGSFVRNEGVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPSR
Ga0306922_101757151	3300032001	Soil	LGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318562_102336672	3300032008	Soil	FTLTRLEACRELRDDLARNQGHPDIPMLRRIADHVSAPRMASYARTAVRDIDHTGAAAVPVALFRDECARAGVRIPRW
Ga0318507_100277254	3300032025	Soil	PRPAPPDATTPAHFTLTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318556_102909231	3300032043	Soil	LEACRELRDDLARNQGHPDIPMLRRIADHVSAPRMASYARTAVRDIDHTGAAAVPVALFRDECARAGVRIPRW
Ga0318558_105345442	3300032044	Soil	EGVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPAR
Ga0318514_106664772	3300032066	Soil	QLRGSFVRNEGVPDILTLRVIADHVTVPRMAAEARNAVRDIDHTGGAAIPLALLRDDCARVGVRMPSR
Ga0318524_100183131	3300032067	Soil	LTSFQACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP
Ga0318553_102165802	3300032068	Soil	LSNVDACEQLRGSLSRNQGAPDIVTLRIIADHVTAPRMAAEARSAVRDIDHTGVAPLPLALLRDDCARAGVRIPGR
Ga0318525_107274072	3300032089	Soil	RGVPDILTLRVIADHVIEPRMAAEARNAVRDIDHTGVAAIPVALLRDDCARAGVRISSR
Ga0307472_1017705392	3300032205	Hardwood Forest Soil	QLRGSLSRHQGVPDIPTLRLIADHVTAPRMAAEARTAVRDIDHTGVAPLALALLRDDCARVGVQIPPR
Ga0310914_114868192	3300033289	Soil	ACRQLLGDLARNQGVPDIPTLRRIADHVTAPRMAADARTAVRDIDHTGGAAIALGLLRDECARAGVPIPAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099636

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences