NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099520

Metagenome Family F099520

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099520
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 57 residues
Representative Sequence VGTWHDPDLGRPIAAPLERCAELLGVDLATIGEAAANVEPYLRADGTRIWSLMQLERQL
Number of Associated Samples 72
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 22.55 %
% of genes near scaffold ends (potentially truncated) 88.35 %
% of genes from short scaffolds (< 2000 bps) 91.26 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.252 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil
(23.301 % of family members)
Environment Ontology (ENVO) Unclassified
(26.214 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.544 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.59%    β-sheet: 9.20%    Coil/Unstructured: 63.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF02371Transposase_20 3.88
PF02601Exonuc_VII_L 2.91
PF00589Phage_integrase 2.91
PF00436SSB 2.91
PF00239Resolvase 2.91
PF08281Sigma70_r4_2 1.94
PF12728HTH_17 1.94
PF13384HTH_23 1.94
PF02627CMD 0.97
PF01493GXGXG 0.97
PF03091CutA1 0.97
PF13828DUF4190 0.97
PF12680SnoaL_2 0.97
PF07411DUF1508 0.97
PF00892EamA 0.97
PF01243Putative_PNPOx 0.97
PF14659Phage_int_SAM_3 0.97
PF13586DDE_Tnp_1_2 0.97
PF05988DUF899 0.97
PF10011DUF2254 0.97
PF03631Virul_fac_BrkB 0.97
PF13641Glyco_tranf_2_3 0.97
PF02796HTH_7 0.97
PF02861Clp_N 0.97
PF01865PhoU_div 0.97
PF02823ATP-synt_DE_N 0.97
PF01425Amidase 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG3547TransposaseMobilome: prophages, transposons [X] 3.88
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 2.91
COG1570Exonuclease VII, large subunitReplication, recombination and repair [L] 2.91
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 2.91
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 2.91
COG2965Primosomal replication protein NReplication, recombination and repair [L] 2.91
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.97
COG0355FoF1-type ATP synthase, epsilon subunitEnergy production and conversion [C] 0.97
COG0542ATP-dependent Clp protease, ATP-binding subunit ClpAPosttranslational modification, protein turnover, chaperones [O] 0.97
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.97
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 0.97
COG1324Divalent cation tolerance protein CutAInorganic ion transport and metabolism [P] 0.97
COG1392Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 familyInorganic ion transport and metabolism [P] 0.97
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.97
COG3422Uncharacterized conserved protein YegP, UPF0339 familyFunction unknown [S] 0.97
COG4312Predicted dithiol-disulfide oxidoreductase, DUF899 familyGeneral function prediction only [R] 0.97

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.25 %
All OrganismsrootAll Organisms41.75 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000858|JGI10213J12805_10409493Not Available746Open in IMG/M
3300000956|JGI10216J12902_103903864Not Available554Open in IMG/M
3300000956|JGI10216J12902_121963457Not Available833Open in IMG/M
3300003373|JGI25407J50210_10016205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → unclassified Saccharothrix → Saccharothrix sp. NRRL B-163481929Open in IMG/M
3300005457|Ga0070662_101460095Not Available590Open in IMG/M
3300005562|Ga0058697_10638710Not Available560Open in IMG/M
3300005981|Ga0081538_10106522All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1391Open in IMG/M
3300005981|Ga0081538_10237697Not Available705Open in IMG/M
3300006196|Ga0075422_10120135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium1026Open in IMG/M
3300006846|Ga0075430_100274627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium1395Open in IMG/M
3300006880|Ga0075429_101552321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium576Open in IMG/M
3300009093|Ga0105240_12609998Not Available522Open in IMG/M
3300009100|Ga0075418_10472903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium1344Open in IMG/M
3300009147|Ga0114129_13444385Not Available507Open in IMG/M
3300009789|Ga0126307_10185113Not Available1670Open in IMG/M
3300009789|Ga0126307_10199477All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1605Open in IMG/M
3300009789|Ga0126307_10319281Not Available1250Open in IMG/M
3300009789|Ga0126307_11485654Not Available549Open in IMG/M
3300009801|Ga0105056_1002157All Organisms → cellular organisms → Bacteria → Terrabacteria group1764Open in IMG/M
3300009810|Ga0105088_1060983Not Available651Open in IMG/M
3300009816|Ga0105076_1014949Not Available1324Open in IMG/M
3300009816|Ga0105076_1125796Not Available512Open in IMG/M
3300009840|Ga0126313_10023808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4109Open in IMG/M
3300009840|Ga0126313_10190138Not Available1571Open in IMG/M
3300009840|Ga0126313_10461085Not Available1014Open in IMG/M
3300009840|Ga0126313_10708991Not Available815Open in IMG/M
3300009840|Ga0126313_10804711Not Available765Open in IMG/M
3300009840|Ga0126313_11620603Not Available539Open in IMG/M
3300010036|Ga0126305_10165708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1384Open in IMG/M
3300010036|Ga0126305_11132908Not Available539Open in IMG/M
3300010037|Ga0126304_10852083Not Available619Open in IMG/M
3300010037|Ga0126304_11125563Not Available537Open in IMG/M
3300010038|Ga0126315_10081633All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1822Open in IMG/M
3300010038|Ga0126315_10540863Not Available747Open in IMG/M
3300010040|Ga0126308_10331716All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1005Open in IMG/M
3300010041|Ga0126312_10499365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium870Open in IMG/M
3300010041|Ga0126312_10869272All Organisms → cellular organisms → Bacteria → Terrabacteria group656Open in IMG/M
3300010042|Ga0126314_10071457Not Available2307Open in IMG/M
3300010044|Ga0126310_10706514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium765Open in IMG/M
3300010045|Ga0126311_10655412All Organisms → cellular organisms → Bacteria → Terrabacteria group836Open in IMG/M
3300010166|Ga0126306_10306538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1224Open in IMG/M
3300010166|Ga0126306_10486440Not Available974Open in IMG/M
3300012351|Ga0137386_10315135All Organisms → cellular organisms → Bacteria1126Open in IMG/M
3300012353|Ga0137367_10046484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ET3-233280Open in IMG/M
3300012355|Ga0137369_10332662Not Available1115Open in IMG/M
3300012355|Ga0137369_10351380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1077Open in IMG/M
3300012358|Ga0137368_10246333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1238Open in IMG/M
3300012358|Ga0137368_10676817Not Available651Open in IMG/M
3300012938|Ga0162651_100022112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria880Open in IMG/M
3300014487|Ga0182000_10076192Not Available1071Open in IMG/M
3300018000|Ga0184604_10358745All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium519Open in IMG/M
3300018031|Ga0184634_10428344Not Available600Open in IMG/M
3300018066|Ga0184617_1180003Not Available628Open in IMG/M
3300019767|Ga0190267_10580850All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium688Open in IMG/M
3300021078|Ga0210381_10231589Not Available652Open in IMG/M
3300022756|Ga0222622_10122736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1635Open in IMG/M
3300027056|Ga0209879_1061673Not Available601Open in IMG/M
3300027277|Ga0209846_1027541All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria915Open in IMG/M
3300027379|Ga0209842_1088052All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300027490|Ga0209899_1010101Not Available2157Open in IMG/M
3300027952|Ga0209889_1034448Not Available1096Open in IMG/M
3300027961|Ga0209853_1157788Not Available545Open in IMG/M
3300028587|Ga0247828_10029825All Organisms → cellular organisms → Bacteria2219Open in IMG/M
3300028587|Ga0247828_10117245All Organisms → cellular organisms → Bacteria → Terrabacteria group1287Open in IMG/M
3300028705|Ga0307276_10007574All Organisms → cellular organisms → Bacteria1844Open in IMG/M
3300028708|Ga0307295_10157207Not Available633Open in IMG/M
3300028708|Ga0307295_10202165Not Available563Open in IMG/M
3300028710|Ga0307322_10055576Not Available972Open in IMG/M
3300028712|Ga0307285_10118454Not Available709Open in IMG/M
3300028717|Ga0307298_10173559Not Available630Open in IMG/M
3300028719|Ga0307301_10148159Not Available755Open in IMG/M
3300028722|Ga0307319_10199671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium654Open in IMG/M
3300028722|Ga0307319_10236209Not Available601Open in IMG/M
3300028771|Ga0307320_10022831All Organisms → cellular organisms → Bacteria2261Open in IMG/M
3300028771|Ga0307320_10296917Not Available641Open in IMG/M
3300028771|Ga0307320_10450962Not Available518Open in IMG/M
3300028791|Ga0307290_10249990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria650Open in IMG/M
3300028796|Ga0307287_10205609Not Available747Open in IMG/M
3300028814|Ga0307302_10126886All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1228Open in IMG/M
3300028814|Ga0307302_10228080All Organisms → cellular organisms → Bacteria → Proteobacteria911Open in IMG/M
3300028875|Ga0307289_10026807All Organisms → cellular organisms → Bacteria2251Open in IMG/M
3300028876|Ga0307286_10045808Not Available1476Open in IMG/M
3300028876|Ga0307286_10047768Not Available1446Open in IMG/M
3300028878|Ga0307278_10070428Not Available1577Open in IMG/M
3300028878|Ga0307278_10240637Not Available804Open in IMG/M
3300030496|Ga0268240_10073862Not Available766Open in IMG/M
3300031731|Ga0307405_11881323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia533Open in IMG/M
3300031824|Ga0307413_10445902Not Available1026Open in IMG/M
3300031852|Ga0307410_10556690Not Available951Open in IMG/M
3300031852|Ga0307410_11885618Not Available532Open in IMG/M
3300031901|Ga0307406_10760955All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium814Open in IMG/M
3300031903|Ga0307407_10002006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7753Open in IMG/M
3300031903|Ga0307407_10454937Not Available930Open in IMG/M
3300031995|Ga0307409_100547714All Organisms → cellular organisms → Bacteria1135Open in IMG/M
3300032002|Ga0307416_101469411All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300032002|Ga0307416_103606496Not Available518Open in IMG/M
3300032004|Ga0307414_11148498Not Available718Open in IMG/M
3300032005|Ga0307411_11576067All Organisms → cellular organisms → Bacteria → Terrabacteria group605Open in IMG/M
3300032080|Ga0326721_10636602All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300032126|Ga0307415_101006029Not Available775Open in IMG/M
3300032126|Ga0307415_101124717Not Available736Open in IMG/M
3300032126|Ga0307415_102007371Not Available563Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil23.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil22.33%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere14.56%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand10.68%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.83%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.85%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.91%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere2.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.94%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.97%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.97%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.97%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.97%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.97%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000858Soil microbial communities from Great Prairies - Wisconsin Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003373Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009801Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30EnvironmentalOpen in IMG/M
3300009810Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30EnvironmentalOpen in IMG/M
3300009816Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10EnvironmentalOpen in IMG/M
3300009836Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012938Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015EnvironmentalOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018066Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1EnvironmentalOpen in IMG/M
3300019767Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 TEnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300027056Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027277Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027379Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027490Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027952Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027961Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028705Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115EnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028710Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380EnvironmentalOpen in IMG/M
3300028712Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139EnvironmentalOpen in IMG/M
3300028717Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300030496Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)EnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032080Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10213J12805_1040949333300000858SoilVGTWHDLELGRPIAAPLPRCAELLGVDLVTVRKVAADVEPYLRADGTRIWSLMQLER
JGI10216J12902_10390386423300000956SoilVGTWHDPDLGRPIAAPLQRCAELLGVDLATICEAAANVEPYLRTDGTRIWSLMQLERQLR
JGI10216J12902_12196345723300000956SoilVRTWHDPDLGRPIAAPLERCAELLGVDLATIRELAANLEPYVRADGTKIWSLMQL
JGI25407J50210_1001620543300003373Tabebuia Heterophylla RhizosphereVGTWHDPALSRPIAAPLQRCAELLGVDFATFQQAAANIEPYLRADGTR
Ga0070662_10146009523300005457Corn RhizosphereVGTWHDPDLGRPIAAPLERCAQLLGVDLATVRGLAATVEPYLRADGTRIWSLMQLERQLRPAAYRR
Ga0058697_1063871023300005562AgaveVGTWQDPDLGRPIAAPLQQCAELLGVDPATIQEAAANVEPYLRADGTRIWSLMQLERQ
Ga0081538_1010652213300005981Tabebuia Heterophylla RhizosphereVGTWHDLDVGRPIAAPLQRCAELLGVDLATVHELAANPEPYIRADGTRIWSL
Ga0081538_1023769713300005981Tabebuia Heterophylla RhizosphereVGTWHDPDLGRPIAAPLERCAELLGVDLPTVRELAANVEPCLRADGIWICSLTQLERQLRPEA
Ga0075422_1012013513300006196Populus RhizosphereVGTWHDLDLGRPIAAPLQRCAELLGVDLATVHALAANVEPYIRADGTRIWSLMQLERQLR
Ga0075430_10027462713300006846Populus RhizosphereVGTWHDLDLGRPIAAPLERCAELLGIDLATVCKLAAKVEPYLRADGTRIWSLMQ
Ga0075429_10155232123300006880Populus RhizosphereVGRWQDLDLGRPIAAPLERCAELLGVDLATAGELASRVEPYIRSDGIELWSLMLLER
Ga0105240_1260999813300009093Corn RhizosphereVGTWHDPDLGRPIAAPLERCAQLLGVDLATVRGLAATVEPYLRADGTRIWSLMQLERQ
Ga0075418_1047290313300009100Populus RhizosphereVGTWHDLDVGRPIAAPLERCAELLGVDLATVHALAANVEPYVRADGTRIWSLMQLERQLRPEAY
Ga0114129_1344438513300009147Populus RhizosphereVGTWYDPELGRPIAAPLERCAELLGVDLATIRTLAADVEPYPHAEDTKVWSLMQLERR
Ga0126307_1018511323300009789Serpentine SoilLGRPIAAPLERCAELLGVDLSTVRELAAKVEPYIRADGTRIWSLTQLERQLRPE
Ga0126307_1019947713300009789Serpentine SoilVDVGRPIAAPLEQCAQLLGVDLATVHELAAKVEPYLRADGTRIW
Ga0126307_1031928123300009789Serpentine SoilVGIWQDPDLGRPIAAPLQRCAELLGVDLATIQEAAANVEPYLRADGTRIWSLMQLERQ
Ga0126307_1148565423300009789Serpentine SoilVGTWYDPELGRPIAAPLERCAELLGVDLATVRKLAADVEPYLRADGTKIWSLMQLERRLRPQAY
Ga0105056_100215723300009801Groundwater SandVGTWHDPDLGRPIAAPLERCAELLGVDLATVGELAAKVEPYVRADGTRIRSLMQLER
Ga0105088_106098313300009810Groundwater SandVGTWHDPDLGRPIAAPLERCAELLGVDLATVREVAANVEPYLRADGTKVRSLT
Ga0105076_101494913300009816Groundwater SandVGTWHDPDLGRPIAAPLERCAGLLGVDSATVREVAANVEPYIRADATRIWSLTLLERQ
Ga0105076_112579613300009816Groundwater SandLGRPIAAPLERCAELLGVELAAVREVAAKVEPYVRADGTRVWSLNQLERQLRPEAYGRR
Ga0105068_106276213300009836Groundwater SandMFDYATRMHTWERHDSDFNRPIAAPLERCAELLGVDLATVRRAATAIEPYVRVDGVKVWSLMQ
Ga0126313_1002380813300009840Serpentine SoilLGRPIAAPLERCAELLGADLATVRELAANVEPYSRADGTTVWSLTLLERQLRPEAF
Ga0126313_1019013813300009840Serpentine SoilLGRPIAAPLERCAELLGVDLATARELAVNVEPYIRADGTKVWSLMQLERQLQPEAYR
Ga0126313_1046108533300009840Serpentine SoilLGRPIAAPLERCAELLGVDLATVRELAAKVEPYIRADGTRIWSLMQLERQLRPEA
Ga0126313_1070899113300009840Serpentine SoilVGTWHDPDLGWPIAALLERCAELLGVDLATVREQAACVEPYIRADGTRIWSLMQLQRQ
Ga0126313_1080471113300009840Serpentine SoilVGTWHDPDLGRPIAAPLERCAELLGVDLATIGEAAANVEPYLRADGTRIWSLMQLERQL
Ga0126313_1162060313300009840Serpentine SoilVGTWYDPELGRPIAAPLERCAELLGVDLATVRKLAADVEPYLRADGIKVWSLMQLERRMRPQAY
Ga0126305_1016570833300010036Serpentine SoilVGTWHDVDVGRPIAAPLEQCAQLLGVDLATVHELAAKVEPYLRADGTRIW
Ga0126305_1113290813300010036Serpentine SoilVGTWHDPDLGRPIAAPLQRCAQLLGIDLATIQEAAATVEPYISADGTKIWSLMQLERQLRPE
Ga0126304_1085208313300010037Serpentine SoilLGRPIAAPLEHCAELLGADLATVRELAAKVEPYIRADGTRIWSLMQLERQLRPEAYGRRP
Ga0126304_1112556313300010037Serpentine SoilVGTWEADAPAYSRPIAAPLERCAELLGVDLATICEAAANVEPYLRADGHRVWSLMQLERQLRPEVY
Ga0126315_1008163333300010038Serpentine SoilLDLGRPIAAPLERCAELLGVNLATVRELAANVEPYIRADGTRIWSLMQLERQLRPE
Ga0126315_1054086323300010038Serpentine SoilVGRPIAAPLEQCAELLGVDLAIVRELAAKVEPYIRADGTRIWSLMQL
Ga0126308_1033171613300010040Serpentine SoilVGTWHDLDLGRPIAAPLEQCAVLLGVDLGTVRELAAEIEPYIRADGTTIWSLMQLERQLRPEAY
Ga0126312_1049936513300010041Serpentine SoilVGTWHDVDVGRPIAAPLEQCAQLLGVDLATVHELAAKVEPYLRADGTRIWS
Ga0126312_1086927213300010041Serpentine SoilVGRPIAAPLERCAELLGVDLATVHELAGKIEPYVRADGTRIWSLMQLERQLRPEAYGRR
Ga0126314_1007145713300010042Serpentine SoilLGRPIAAPLEQCAELLRVDLATVRELAAKVEPYVRADGTRIWSLMQLERQLRPEAY
Ga0126310_1070651413300010044Serpentine SoilLVGTWHDLAVGRPIAAPLERCAELLGVDLATIREAAANVEPYVRADGTRIWSLMQLER*
Ga0126311_1065541223300010045Serpentine SoilMSSITYCSGAWHDSDLGRPIAAPLERCAELLGVDLGTIREAATNVEPYIRADCTRIWSLMQL
Ga0126306_1030653823300010166Serpentine SoilVGTWYDPELGRPIAAPLERCAELLGVDLATVRKLAADVEPYLRADGTKIWSLMQLERCGATG*
Ga0126306_1048644023300010166Serpentine SoilMFGYPAAVGTWYDPELGRPIAAPLERCAELLGVDLATVRKLAADVEPYFRADGTKVW
Ga0137386_1031513513300012351Vadose Zone SoilVQTWEANDPDYGRPIAAPLDQCAELLGIDLATIRELAANVEPSLRADGTKVWSLMQLERQVRPEAF
Ga0137367_1004648453300012353Vadose Zone SoilMRTWDRHDPDLGRPIAAPLEQCAQLLGVDLVTVCELAGNVEPYVRADGTRVWSL*
Ga0137369_1033266213300012355Vadose Zone SoilMAVGTWHDPDLGRPIAAPLERCAELLGVDLATVCEVAANVEPYLRADGSRVWSLMQ
Ga0137369_1035138013300012355Vadose Zone SoilVRTWHDPDLGRPIAAPLERCAELLGVNLATVRELAAGIEPYRRADGTE
Ga0137368_1024633333300012358Vadose Zone SoilVRTWHDPDLGRPIAAPLERCAELLGVNLATVRELAAGIEPYRRADGTESGA*
Ga0137368_1067681723300012358Vadose Zone SoilMRTWEGRDPDLGRPIAAPLEQCAELLGVDLARVHEVAVNVEPYIRADGRRVWSLMQLERQLRPEAFG
Ga0162651_10002211213300012938SoilLAHGCPPPLEQCAELLGVDLSTVRELAANVEPYLRADGTRIWSLMQLERQLR
Ga0182000_1007619223300014487SoilVGTWHDLDVGRPIAAPLERCAELLGVDPATVRELAANVEPYLRVDGTRIWSLMQLGPFRGP*
Ga0184604_1035874513300018000Groundwater SedimentVGTWHDLDVGRPIAAPLQRCAELLGVDLATIRELAANVEPYLRADGTRVLEPDAA
Ga0184634_1042834413300018031Groundwater SedimentVGTWHDPDLGRPIAAPLERCAELLGVDSATAWEVAAKIEPYVRADGTRVWS
Ga0184617_118000313300018066Groundwater SedimentVDVGRPIAAPLEQCAQLLGVDFATVHELAAKVEPYLHADGTRIWSLTQLERQ
Ga0190267_1058085013300019767SoilVGTWHDLDVSRPIAAPLARCAELLGIDLATIREAAAHVEPYLRADGTRIWSLMQLERQLR
Ga0210381_1023158923300021078Groundwater SedimentVGTWHDPDLGRPIAAPLERCAELLGVDLATVRKLAEGIEPYRRSDGTEIWSLMQL
Ga0222622_1012273613300022756Groundwater SedimentMSASNSCSIHWSGGTWHDPDLGRPIAAPLERCAQLLGAELATVRELAATVEPYLRADGTRIWCLMQL
Ga0209879_106167313300027056Groundwater SandMRTWERHDPDVGRPIAAPLERCAELLGVDLATIRRVAADVEPYVRSDGTKVWSLMQLERQLRPE
Ga0209846_102754113300027277Groundwater SandVGTWHDPEAGRPIAAPLERCAELLGVDLATVRELAAGVEPYVRADRTKVWSLMLLER
Ga0209842_108805213300027379Groundwater SandVGTWHDLDVGRPIAAPLERCAELLGVDLATIRAAAANVEPYLRTDGTRIWSLMQLERQLRPEA
Ga0209899_101010113300027490Groundwater SandVGIWHDPDLGRPIAAPLEQCAELLDLATACEAAAKLEPYVHANGTRIWSLMQLERQLRP
Ga0209889_103444813300027952Groundwater SandVVGTWHDPELGRPIAAPLERCAELLGVDLAIVRELAANVEPYVRSDGTEIWSLMQLERQLRP
Ga0209853_115778813300027961Groundwater SandVGTWHDPDVGRPIAAPLDCCAELLVVDLATIREVAASIEPYIRADGTKVWSLMLL
Ga0247828_1002982523300028587SoilVGTWHEPGLGRPIAAPLERCAELLGVDLARLSEAAAKVEPYLRADGTRIWSLMQLERQLR
Ga0247828_1011724533300028587SoilVGTWHDPDQGRPIAAPLERCAQLLGVELATVRTLAATVEPYLRADGTRIWSLMQLER
Ga0307276_1000757433300028705SoilVGTWQDPDLGRPIAAPLPRCAELLGVDLATIQEAAANVEPYLRADGTRIWSLMQHSGC
Ga0307295_1015720723300028708SoilVGTWHDPGLGRPIAAPLERCAELLGVDLASLSEAAAKVEPYIRADGTRIWSLMQLERQL
Ga0307295_1020216513300028708SoilVGTWHDSDLGRPIAAPPERCAELLGVDLGTMGELAAKVEPYVRADGTRIWSLMQLERQL
Ga0307322_1005557633300028710SoilVGTWHDPGLGRPIAAPLERCAELLGVDLASLSEAAAKVEPYIRADGTRIWSLMQLE
Ga0307285_1011845413300028712SoilVGTWHDVNVGRPIAAPLEQCAQLLGVDLATVHELAAQVEPYLRADGTR
Ga0307298_1017355923300028717SoilVGTWHDPGLGRPIAAPLERCAELLGVDLASLSEAAAKVEPYIRADGTRIWS
Ga0307301_1014815913300028719SoilVGTWHDPDLGRPIAAPLEQCAELLGVDLALVRELAANVEPYVRADGTRIWSLTLLERQLRPEA
Ga0307319_1019967113300028722SoilVGTWHDPDVGRPIAAPLERCAELLGIDLATIRAAAANVEPYLRTDGTRIWSLTQ
Ga0307319_1023620923300028722SoilVGTWHDPDLGRPIAAPLERCAELLGVDMATIRELAANVEPYVRADGTR
Ga0307320_1002283123300028771SoilVGTWHDPDLGRPIAAPVERCAELLGVDLATIGAAAANVEPYLRADGRRIWSLMQLER
Ga0307320_1029691713300028771SoilVGTWHDPDAGRPIAAPLERCAELLGVNLATVREAAAKVEPYIRADGTRIWSLMRLE
Ga0307320_1045096213300028771SoilVGTWHDPDLGRPIAAPLERCAELLGVDPATIRAAAANVEPYLRADGTSIWSLMQLER
Ga0307290_1024999013300028791SoilVGTWHDPDLGRPIAAPLERCAELLGVDLATVRELAAKVQPYLRADGTRIWRLMQLARPLRPQA
Ga0307287_1020560923300028796SoilMLPAWRTWDAPDFYRPIAAPLDRCAELLGVDLATVCEAAVNVEPYIRADGTEVWSLMQLE
Ga0307302_1012688623300028814SoilVGTWHDPDLGRPIAAPLERCAELLGVDLATVRKLAGKVEPYLRTDGTRIWSLMLLERQLRPE
Ga0307302_1022808023300028814SoilVGTWHDPDLGRPIAAPLERCAELLGVDLATIQEAAANVEPYLRADGTRIWSLMQLERQLRPE
Ga0307289_1002680733300028875SoilMSASNSCSIHWSGGTWHDPDLGRPIAAPLERCAQLLGAELATMRELAATVEPYLRADGTRIWCLMQL
Ga0307286_1004580823300028876SoilVGTWHDVNVGRPIAAPLEQCAQLLGVDLATVHELAAQVEPYLRADGTRIWNL
Ga0307286_1004776813300028876SoilMEPRTGVRYDHSVGTWHDPGLGRPIAAPLERCAELLGVDLASLSEAAAKVEPYIRADGTRIWSLMQLERQ
Ga0307278_1007042813300028878SoilVGTWHEAHLGRPIAAPLERCAELLGVDLATVCKLAAKVEPYIRADGTKVWSLMQLERQL
Ga0307278_1024063713300028878SoilVDVGRPLAAPLEQYAQLLGVDLATIRELAAKVEPYLRADGTRIWSLV
Ga0268240_1007386223300030496SoilVGTWHDPDVGRPIAAPLERCAELLGVDLTTLRKLSANVEPFVRADGTRIWSL
Ga0307405_1188132323300031731RhizosphereVGTWHDLDLGRPIAAPLERCAELLGVDPATVRELAAEVEPYIRADGARIWSLT
Ga0307413_1044590213300031824RhizosphereVGTWQDPDLGRPIAASLERCAELLGVDLATIRELAAKLEPYVRADGTRIWSLMQLERQLR
Ga0307410_1055669023300031852RhizosphereVGTWYDPELGRPIAAPLERCAELLGVDLATVRKLAADVEPYLRADGTKVWSLMQLERRM
Ga0307410_1188561813300031852RhizosphereVGTWHDPDLGRPIAAPLARCVELLGVDLATICAAAAKVEPYLRADGTRIWSLMQLERQLRPE
Ga0307406_1076095513300031901RhizosphereVGTWHDPDVGRPIAAPLPRCAELLGVDLATIAAAAANVEPYLRADGAKVWSLMQLERQLRPE
Ga0307407_1000200613300031903RhizosphereVGTWHDLDLGRPIAVPLERCAELLGVDLATIGAAAVNVEPYIRADGTRIWSLTQLER
Ga0307407_1045493713300031903RhizosphereVGTWQDADLGRPIAAPLERCAELLGVDLAALREAAVNVEPYLRADGTRIWSLMQLERQLR
Ga0307409_10054771423300031995RhizosphereVGTWHDLDVGRPIAAPLEQCAELLDVDLAVVRELAAKVEPYLRADGTRIWSLMQLERQLRPEAY
Ga0307416_10146941123300032002RhizosphereVGTWHDPGLGRPIAAPLERCAELLGVDLVTIREAATTVEPYIRVDGTRIWSLMQ
Ga0307416_10360649613300032002RhizosphereVGSWHDPDLGRPIAAPLEQCAELLGVDLATICAAAINVAPYLRADGRIWSLMQLER
Ga0307414_1114849813300032004RhizosphereVGTWHDLDVGRPIAAPLERCAELLGVDPAAVQEAAAKVEPYVRADGTRIWSLTQL
Ga0307411_1157606723300032005RhizosphereVGTWHGPEVGRPIAAPLERCAELLGVDLATVHELAGKIEPYVRADGTRIWSLMQLE
Ga0326721_1063660213300032080SoilVGTWHDLNVGRPIAAPLERCAELLGVDLATIREAAASVEPYLRTDNTRIWSLMQLERQLR
Ga0307415_10100602913300032126RhizosphereVFDTLGRVGTWHDPDLGRPIAAPLARCAELLGVDLATLRELAANVEPYVRADGTS
Ga0307415_10112471723300032126RhizosphereVGRWHDLDVGRPIAAPLERLGVDLASIRAAAAKVEPYLRADGTRIWSLMQLE
Ga0307415_10200737113300032126RhizosphereVGTWHDPDLGRPIAAPLERCAELLGVHLATVQKAAANLEPYIRADGTRIWSLMQLERQLRPQAYG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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