Metagenome / Metatranscriptome Family F099227

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099227
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	91 residues
Representative Sequence	RDGRFDFVCARTADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRNKKKNKKSSDEIKITVKPSALIVLHPAASIKT
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.86 %
% of genes near scaffold ends (potentially truncated)	83.50 %
% of genes from short scaffolds (< 2000 bps)	86.41 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.165 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.359 % of family members)
Environment Ontology (ENVO)	Unclassified (35.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.777 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.50% β-sheet: 15.83% Coil/Unstructured: 71.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00152	tRNA-synt_2	74.76
PF01336	tRNA_anti-codon	4.85
PF00781	DAGK_cat	3.88
PF01975	SurE	2.91
PF13360	PQQ_2	1.94
PF00278	Orn_DAP_Arg_deC	1.94
PF01011	PQQ	0.97
PF01384	PHO4	0.97
PF00575	S1	0.97
PF01047	MarR	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0017	Aspartyl/asparaginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	74.76
COG0173	Aspartyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	74.76
COG1190	Lysyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	74.76
COG2269	Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway)	Translation, ribosomal structure and biogenesis [J]	74.76
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	7.77
COG0496	Broad specificity polyphosphatase and 5'/3'-nucleotidase SurE	Replication, recombination and repair [L]	2.91
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	1.94
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	1.94
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.14 %
Unclassified	root	N/A	37.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.14 %
Unclassified	root	N/A	37.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.17 %
Unclassified	root	N/A	37.86 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.97 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	37.86 %
Unclassified	root	N/A	37.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	37.86 %
Unclassified	root	N/A	37.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.97 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	30.10 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.97 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.97 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.97 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.97 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	0.97 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.97 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Flavonifractor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor	0.97 %
Spiralia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia	0.97 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Lophotrochozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Mollusca	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Gastropoda	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Heterobranchia	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Euthyneura	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Panpulmonata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Sacoglossa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata → Sacoglossa	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Placobranchoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata → Sacoglossa → Placobranchoidea	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Plakobranchidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata → Sacoglossa → Placobranchoidea → Plakobranchidae	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Elysia	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata → Sacoglossa → Placobranchoidea → Plakobranchidae → Elysia	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Elysia chlorotica	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata → Sacoglossa → Placobranchoidea → Plakobranchidae → Elysia → Elysia chlorotica	0.97 %
Flavonifractor plautii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	0.97 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	0.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459008\|GA8OVOZ01BKF3Q	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
2170459010\|GIO7OMY01D2MCX	Not Available	563	Open in IMG/M
3300000559\|F14TC_100654802	Not Available	574	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1042678	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300000955\|JGI1027J12803_103592613	Not Available	1505	Open in IMG/M
3300002128\|JGI24036J26619_10058696	Not Available	756	Open in IMG/M
3300003911\|JGI25405J52794_10005501	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2286	Open in IMG/M
3300004114\|Ga0062593_101113938	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300004114\|Ga0062593_103088390	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300004463\|Ga0063356_106121370	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300004479\|Ga0062595_101416418	Not Available	635	Open in IMG/M
3300005166\|Ga0066674_10294962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	762	Open in IMG/M
3300005179\|Ga0066684_10762430	Not Available	643	Open in IMG/M
3300005294\|Ga0065705_10399981	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	884	Open in IMG/M
3300005328\|Ga0070676_11589331	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005353\|Ga0070669_101257710	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005354\|Ga0070675_101328191	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005446\|Ga0066686_10312474	Not Available	1069	Open in IMG/M
3300005446\|Ga0066686_10522839	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300005447\|Ga0066689_10744975	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300005466\|Ga0070685_10835646	Not Available	681	Open in IMG/M
3300005467\|Ga0070706_100395232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1287	Open in IMG/M
3300005576\|Ga0066708_11015512	Not Available	515	Open in IMG/M
3300005614\|Ga0068856_102328253	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005937\|Ga0081455_10036820	All Organisms → cellular organisms → Bacteria	4351	Open in IMG/M
3300006028\|Ga0070717_10459614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1148	Open in IMG/M
3300006049\|Ga0075417_10662120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300006625\|Ga0101569_10412231	Not Available	597	Open in IMG/M
3300006854\|Ga0075425_102758825	Not Available	541	Open in IMG/M
3300007255\|Ga0099791_10136580	Not Available	1141	Open in IMG/M
3300009012\|Ga0066710_101134017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1210	Open in IMG/M
3300009147\|Ga0114129_11635462	Not Available	788	Open in IMG/M
3300009553\|Ga0105249_10690244	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300010041\|Ga0126312_11142266	Not Available	573	Open in IMG/M
3300010048\|Ga0126373_10987359	Not Available	907	Open in IMG/M
3300010329\|Ga0134111_10272342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300010362\|Ga0126377_10154942	All Organisms → cellular organisms → Bacteria	2156	Open in IMG/M
3300010362\|Ga0126377_11079220	Not Available	871	Open in IMG/M
3300010366\|Ga0126379_10904849	Not Available	985	Open in IMG/M
3300010366\|Ga0126379_13716032	Not Available	511	Open in IMG/M
3300010376\|Ga0126381_102768367	Not Available	700	Open in IMG/M
3300010401\|Ga0134121_12849613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300012198\|Ga0137364_10201211	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1459	Open in IMG/M
3300012198\|Ga0137364_11221982	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300012199\|Ga0137383_11238445	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	535	Open in IMG/M
3300012200\|Ga0137382_10272538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1176	Open in IMG/M
3300012200\|Ga0137382_10446009	Not Available	915	Open in IMG/M
3300012201\|Ga0137365_10243456	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300012204\|Ga0137374_10610322	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata → Sacoglossa → Placobranchoidea → Plakobranchidae → Elysia → Elysia chlorotica	831	Open in IMG/M
3300012208\|Ga0137376_10096874	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2495	Open in IMG/M
3300012285\|Ga0137370_10328745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	917	Open in IMG/M
3300012285\|Ga0137370_10577038	Not Available	693	Open in IMG/M
3300012354\|Ga0137366_10008280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	8192	Open in IMG/M
3300012356\|Ga0137371_10052363	All Organisms → cellular organisms → Bacteria	3157	Open in IMG/M
3300012359\|Ga0137385_10477815	Not Available	1056	Open in IMG/M
3300012360\|Ga0137375_10514458	Not Available	1015	Open in IMG/M
3300012582\|Ga0137358_10592508	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	744	Open in IMG/M
3300012918\|Ga0137396_10206374	Not Available	1445	Open in IMG/M
3300012925\|Ga0137419_11322541	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300012975\|Ga0134110_10201461	Not Available	835	Open in IMG/M
3300015051\|Ga0137414_1176201	All Organisms → cellular organisms → Bacteria	2597	Open in IMG/M
3300015242\|Ga0137412_10870653	Not Available	655	Open in IMG/M
3300015373\|Ga0132257_102189203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715	Open in IMG/M
3300015374\|Ga0132255_100135289	All Organisms → cellular organisms → Bacteria	3413	Open in IMG/M
3300018028\|Ga0184608_10287960	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	722	Open in IMG/M
3300018071\|Ga0184618_10128155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1020	Open in IMG/M
3300018431\|Ga0066655_10257527	Not Available	1118	Open in IMG/M
3300018482\|Ga0066669_11714349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577	Open in IMG/M
3300019361\|Ga0173482_10083239	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300019869\|Ga0193705_1077968	Not Available	643	Open in IMG/M
3300019877\|Ga0193722_1022870	All Organisms → cellular organisms → Bacteria → Proteobacteria	1616	Open in IMG/M
3300020004\|Ga0193755_1180512	Not Available	618	Open in IMG/M
3300020015\|Ga0193734_1021013	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300020170\|Ga0179594_10271014	Not Available	641	Open in IMG/M
3300021411\|Ga0193709_1027891	Not Available	1363	Open in IMG/M
3300021510\|Ga0222621_1015374	Not Available	1497	Open in IMG/M
3300022756\|Ga0222622_10317764	Not Available	1076	Open in IMG/M
3300022756\|Ga0222622_10373073	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	999	Open in IMG/M
3300026078\|Ga0207702_11838314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300026329\|Ga0209375_1143496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1018	Open in IMG/M
3300026342\|Ga0209057_1049974	Not Available	1979	Open in IMG/M
3300026538\|Ga0209056_10383037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	888	Open in IMG/M
3300026550\|Ga0209474_10030839	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4019	Open in IMG/M
3300026550\|Ga0209474_10147106	All Organisms → cellular organisms → Bacteria → Proteobacteria	1538	Open in IMG/M
3300026555\|Ga0179593_1126211	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	2115	Open in IMG/M
3300026665\|Ga0208070_101167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300026791\|Ga0208072_102906	Not Available	847	Open in IMG/M
3300027684\|Ga0209626_1136283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300027876\|Ga0209974_10233251	Not Available	688	Open in IMG/M
3300028784\|Ga0307282_10541454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300028814\|Ga0307302_10268037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	838	Open in IMG/M
3300028884\|Ga0307308_10111816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	1302	Open in IMG/M
3300030916\|Ga0075386_12097954	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	640	Open in IMG/M
3300031231\|Ga0170824_105037068	All Organisms → cellular organisms → Bacteria	2567	Open in IMG/M
3300031231\|Ga0170824_110283498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300031231\|Ga0170824_112825844	Not Available	804	Open in IMG/M
3300031231\|Ga0170824_123633043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1046	Open in IMG/M
3300031446\|Ga0170820_11810896	All Organisms → cellular organisms → Bacteria	2659	Open in IMG/M
3300031469\|Ga0170819_11467156	All Organisms → cellular organisms → Bacteria	2980	Open in IMG/M
3300031716\|Ga0310813_11659366	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300032174\|Ga0307470_11294285	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300033412\|Ga0310810_10492518	Not Available	1222	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.44%
Host-Associated	Host-Associated	14.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.58%
Plants	Host-Associated → Plants	14.56%
Aquatic	Environmental → Aquatic	4.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.80%
Sediment	Environmental → Aquatic → Sediment	4.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.82%
Loam	Environmental → Terrestrial → Soil → Loam	7.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459008	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006625	Soil microbial communities from the Leymus chinensis steppe, China - after adding 10.5 g N m- 2, yr-1	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026665	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN588 (SPAdes)	Environmental	Open in IMG/M
3300026791	Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F48_05041830	2170459008	Grass Soil	LHLAPRAETRDGRFDFVCARAADCALLMEHFDARVAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKKNKKSSDEIKITVKPSALIVLHPAASIKA
F62_04244310	2170459010	Grass Soil	VAGKKSKSPLPTKRFRELRIVWKGPTIHLDDELWRNKKKNKKSSDEIKVTVKPSALIVLHPTATIKT
F14TC_1006548021	3300000559	Soil	LLMEHFDARVAGKKSKSPLPTRRFRELRIAWKGSTIHLDDELFRNKKNNNKSDEIKITVKPSALIVLHPAATIKT*
KanNP_Total_noBrdU_T14TCDRAFT_10426781	3300000596	Soil	ACARPADCALLAKHFDARMAGKKSKSPLPARKFRELQVVWKESTESTLHLDDKLWPDDKQGRKSSSEIKITVKPSALIILQPAXAVKT*
JGI1027J12803_1035926131	3300000955	Soil	LLMEHFDARVAGKKSKSPLPTRRFRKLRIVWKGSTIHLDDELWRNKKKNKKSPDEIKIVVKPSALIVLQPTATIKT*
JGI24036J26619_100586961	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	HFEARVAGKKSKSPLPTRRFRNLRIVWKGSTIHLDDELWRNKKNKSSDEIKITVKPSALIVLHPAASIKT*
JGI25405J52794_100055011	3300003911	Tabebuia Heterophylla Rhizosphere	FVCARAADRELLTEHFDARVAGKKNKSPLPARRFRELRIVWKGSTIHLDDELFRNKKNKKSSDEIKITVKPSALIVLHPAATIKA*
Ga0062593_1011139382	3300004114	Soil	LWEAMNIHSVGPALYLAPRAATWDGRFDFACARPADCPLLAKHFDARVVGKKSKSPLPARKFRELRVVWNGSTLHLDDKLWPDKKQNQKSSSEIKITVKHSALIILQPASAVKT*
Ga0062593_1030883902	3300004114	Soil	LWEAMNIHSVGPALYLAPRAATRDGRFDFACARPADCALLAKHFDARVAGKKSKSPLPAGKFRELRVVLTESTESTLHLDDKLWPDEKQRQKSSSEIKITVKPSALIILQPAPAVKT*
Ga0063356_1061213702	3300004463	Arabidopsis Thaliana Rhizosphere	FDFVCARTSDRMLLMEHFDARVAGKKSKSPLPTRRFRDLRIVWKGSTLHLDDELWRDKKKNNSSDAIKITVKPSALIILQPAATIKT*
Ga0062595_1014164182	3300004479	Soil	VAGKKSKSPLPTRRFRNLRIVWKGSTIHLDDELWRNKKNKSSDEIKITVKPSALIVLHPAASIKT*
Ga0066674_102949622	3300005166	Soil	EKKHKFPLPIRKFRQLRIVWRGSTLHLDDEPWPRKKEKPKSPSEIKITVKPSALVILQPAAHEP*
Ga0066684_101930604	3300005179	Soil	EHFDARLARKKSRFPLPTRRFRQLRIAWKGSTLHFDDELWPTKKQRPRDHGEIEIIVRPSALIILQPAASASI*
Ga0066684_107624301	3300005179	Soil	CARPADSALLAKHFEARVDGKKSNSPLPARKFRKLRVVWKGPALHLDDKLWPKKKQSGKAPNEIEITVKPSALIILQPAPMIKT*
Ga0065705_103999811	3300005294	Switchgrass Rhizosphere	LYLAPRAATRDGRFDFACARPADCALLAKHFDARVAGKKSKSPLPARKFRELRVVWKESAESTLHLDDKLWPDEKQRQKSSSEIKITVKPSALIILQPAPAVKT*
Ga0070676_115893311	3300005328	Miscanthus Rhizosphere	MSLFYETADCTLLAKHFDARIAGKKSKSPLPARKFRELRVVWNGSTLHLDDKLLPDKKQSQKSSSEIKITVKH
Ga0070669_1012577101	3300005353	Switchgrass Rhizosphere	MSLFYETADCPLLAKHFDARIAGKKSKSPLPARKFRELRVVWNGSTLHLDDKLLPDKKQSQKSSSEIKITVKHSALIILQPAPAVKT*
Ga0070675_1013281912	3300005354	Miscanthus Rhizosphere	RDGRFDFVCARTADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRNKKKNKKSSDEIKITVKPSALIVLHPAASIKT*
Ga0066686_103124741	3300005446	Soil	ARAADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVCKGSTIHLDDELWRDKKRNKKSSDEIKITVKPSALIVLHPAASIKT*
Ga0066686_105228391	3300005446	Soil	ETRDGRFDFVCARRADHALLIEHFDARVAGKKSKSPLPTRRFRQLQIVWKGSTIHLDDELWRDKKKNKKSSNQIKITVKPSALIVLHPAATIKT*
Ga0066689_107449751	3300005447	Soil	ETRDGRFDFVCARTADRARLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRNKKKNKKSSDEIKITVKPSALIVLHPAAAIST*
Ga0070685_108356461	3300005466	Switchgrass Rhizosphere	FDARVAGKKSKSPLPTRRFRKLRIAWKGSTIHLDDQLWRDKKKNDKSPEEIKITVKPSALIILQPSATIKT*
Ga0070706_1003952322	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLDARMAGKKIKSPLPTRRFREFPVTWKRSTIHLDDELRQNPKKNKKLSNEIRITVKASALIIPAAGCRDPSQSTYEGVPLDQ*
Ga0066708_110155121	3300005576	Soil	LLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSAIHLDDELWRDKKRNKKSSDEIKITVKPSALIVLHPAASIKT*
Ga0068856_1023282531	3300005614	Corn Rhizosphere	ATRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRKLRIAWKGSTIHLDDQLWRDKKKNDKSPEEIKITVKPSALIILQPSATIKT*
Ga0081455_100368205	3300005937	Tabebuia Heterophylla Rhizosphere	LLMEHFDARVAGKKSESPLPARRFRELRIVWKGSTIHLDDELFRNKKKNKKSSDEIKVTVKPSALIVLHPAATIKT*
Ga0070717_104596141	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VCARAADRPLLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRNKKKNKKSSDEIKIVVKPSALIVLQPTATIKT*
Ga0075417_106621201	3300006049	Populus Rhizosphere	VCARAADRELLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRDKKNNKKSSDEIKITVKPSALIVLHPAATIKA*
Ga0101569_104122311	3300006625	Soil	DFVCARTADRARLMEHFDARVAGKKSKSPLPTRRFRELRILWKGSTIHLDDELWRNKKNKKSSDEIRITIKPSALIVLPPAAAIKT*
Ga0075425_1027588251	3300006854	Populus Rhizosphere	AGNKSKSPLPTRRFRELRIVWKGSTIHLDDELFRNKKNKKSSHEIKITVKPSALIVLHPAAKIKT*
Ga0099791_101365801	3300007255	Vadose Zone Soil	DYALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKPWPEKKESEKSSNEIKITVKPSALIILQPAAAVKI*
Ga0066710_1011340172	3300009012	Grasslands Soil	ALHLAPRAATKDGQFDFVCARQPDYALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKLWPEKKQSEKSSNEIKITVKPSALIILQPAAAVKI
Ga0114129_116354622	3300009147	Populus Rhizosphere	EHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRDKKNNKKSSDEIKITVKPSALIVLHPAATIKA*
Ga0105249_106902442	3300009553	Switchgrass Rhizosphere	VGPALHLAPGAETRDGRFDFVCARTADRARLMEHFEARVAGKKSKSPLPTRRFRNLRIVWKGSTIHLDDELWRNKKNKSSDEIKITVKPSALIVLHPAASIKT*
Ga0126312_111422662	3300010041	Serpentine Soil	RARLMEHFDARVAGKKSKSPLPTKRFRDLRIVWKGSTIHLDDELCRNKKKKKKSGEIKITVKPSALIVLQPMAAIKT*
Ga0126373_109873592	3300010048	Tropical Forest Soil	RFDFACAHPADCALLAKHFEARVAGKKSKSPLPARKFRELRVVWKGSTLHLDDKLWSEKNRTEKASSEIKITVKPSALIILQPAATIKT*
Ga0134111_102723421	3300010329	Grasslands Soil	AATRDGQFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVCKGSTIHLDDELWRDKKRNKKSSDEIKITVKPSALIVLHPAASIKT*
Ga0126377_101549421	3300010362	Tropical Forest Soil	RSVGPALHLAPTAETRDGRFDFVCARTADRAVLMEHFDARVAGKKSKSPLPTRRFRELRIAWKGSTIHLDDELWRNKKKNRKSSEEIKVTVKPSALIVLHPAAAIKT*
Ga0126377_110792202	3300010362	Tropical Forest Soil	LAKHFEARVDGKKSNSPLPARKFRELRVAWKGSTLHLDDKVWPEKEQSERASSEIKITVKHSALIILQPGPGART*
Ga0126379_109048492	3300010366	Tropical Forest Soil	LAPRAGTKDGRFDFACARSADCALLAKHFEARVDGKKSNSPLPARKFRELRVAWKGSTLHLDDKVWPEKEQSERASSEIKITVKHSALIILQPGPGART*
Ga0126379_137160321	3300010366	Tropical Forest Soil	FEARVAGKKSKSPLPARKFRELRVVWKGSTLHLDDKLWSEKNRTEKASSEIKITVKPSALIILQPAATIKT*
Ga0126381_1027683672	3300010376	Tropical Forest Soil	AALLAKHFEARVTGKKSKSPLPARKFRELRVVWKGSTLHLDDKLWPEKTKSGKASAEIRITVKPSALIILQPAAAIKT*
Ga0134121_128496131	3300010401	Terrestrial Soil	MNIRSVGPALHLAPRAETRDGRFDFVCARAADRALLMEHFDARVAGKTSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKKNKSSDEIKITVKPSALIVLHPAASIKA*
Ga0137364_102012111	3300012198	Vadose Zone Soil	ALHLAPGAATRDGRFDFACARQADCTLLAKHFDARVAGKKSKSPLPARKFRELRIVCKGSTLHLDDKLWPEKKQSGKGSSEIKITVKHSALIILQPAPTIKA*
Ga0137364_112219822	3300012198	Vadose Zone Soil	MEHFDARVTGKKSKSPLPTRRFRELRIIWKGSTIHLDDELWRDKKKNKKSADEIKITVKP
Ga0137383_112384452	3300012199	Vadose Zone Soil	MEHFDARVTGKKSKSRLPTRRFRKLRIVWKGSTIHLDDQLWRDKKKNMKSADEIKITVKPSALIILQPAATIKT*
Ga0137382_102725381	3300012200	Vadose Zone Soil	HLAPRAATKDGQFDFVCARQADYALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKPWPETKQSEKSSNEIKITVKPSALIILQPAAAVKI*
Ga0137382_104460091	3300012200	Vadose Zone Soil	YALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLGDKLWPEKKQSEKSSNEIKITVKPSALIILQPAAAVKI*
Ga0137365_102434562	3300012201	Vadose Zone Soil	MNIHSVGPALYLAPRAGTRDGRFDFACARPADSALLAKHFEARVNGKKSNSPLPARKFRKLKVVWKGPALHLDDKLWPKKKQSGKYSSEIEITVKPSALIILQPAPAVKT*
Ga0137374_106103221	3300012204	Vadose Zone Soil	HLAPRAATRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRDKKRNKKSSDEIKITVKPSALIILHPAATIKT*
Ga0137376_100968741	3300012208	Vadose Zone Soil	HLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKLWPEKKQSEKSSNEIKITVKPSALIILQPAAAVKI*
Ga0137370_103287452	3300012285	Vadose Zone Soil	VGPALHLAPGAATRDGRFDFACARQADCTLLAKHFDARVAGKKSKSPLPARKFRELRIVCKGSTLHLDDKLWPEKKQSGKGSSEIKITVKHSALIILQPAPTIKA*
Ga0137370_105770381	3300012285	Vadose Zone Soil	MEHFDARVAGKKSKSPLPTRRFRELRIVCKGSTIHLDDELWRDKKRNKKSSDEIKITVKPSALIILQPAATIKT*
Ga0137366_100082807	3300012354	Vadose Zone Soil	MNIHSVGPALYLAPRAGTRDGRFDFACARPADSALLAKHFEARVDGKKSNSPLPARKFRKLRVVWKGPALHLDDKLWPKKKQSGKSSNEIEITVKPSALIILQPAPAVKT*
Ga0137371_100523633	3300012356	Vadose Zone Soil	MEHFDARVTGKKSKSRLPMRRFRKLRIVWKGSTIHLDDQLWRDKKKNMKSADEIKITVKPSALIILQPAATIKT*
Ga0137385_104778152	3300012359	Vadose Zone Soil	ADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVCKGSTIHLDDELWRDKKRNKKSSDEIKITVKPSALIVLHPAASIKT*
Ga0137375_105144582	3300012360	Vadose Zone Soil	DCALLLEHFDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKLWPEKKQSGKSSNEIKITVKPSALIILRPAAAVKI*
Ga0137358_105925082	3300012582	Vadose Zone Soil	PRAATKDGQFDFVCARQPDYALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKLWPEKKQSEKSSNEIKITVKPSALIILQPAAAVKI*
Ga0137396_102063741	3300012918	Vadose Zone Soil	LHLAPRAATKDGQFDFVCARQPDYALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKLWPEKKQSEKSSNEIKITVKPSALIILQPAPAVRT*
Ga0137419_113225412	3300012925	Vadose Zone Soil	SVGPALHLAPRAETRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKKNKKSSDEIKITVKPSALIVLHPAASIKT*
Ga0134110_102014612	3300012975	Grasslands Soil	ADSALLAKHFEARVDGKKSNSPLPARKFRKLRVVWKGPALHLDDNIWPKKKQSGKSSNEIEIRVKPSALIILQPAPMIKT*
Ga0137414_11762011	3300015051	Vadose Zone Soil	AIRFCLRARVCARAADRALLMEHFDAHVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRDKKRNKKSSDEIKITVKPSALIVLHPAASIKT*
Ga0137412_108706531	3300015242	Vadose Zone Soil	VAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKKNKKSSDEIKITVKPSALIVLHPAATIKT*
Ga0132257_1021892032	3300015373	Arabidopsis Rhizosphere	WEAMNIRSVGPALHLAPRAETKDGRFDFVCARAADRALLMEHFDARVAGKKSSSPLPTRRFRDLRIVWKGSTIHLDDELWWNKKKNKSSDEIKITVKPSALIVLHPAASIKA*
Ga0132255_1001352894	3300015374	Arabidopsis Rhizosphere	LLMEHFDARVAGKKSSSPLPTRRFRDLRIVWKGSTIHLDDELWWNKKKNKSSDEIKITVKPSALIVLHPAASIKA*
Ga0184608_102879602	3300018028	Groundwater Sediment	NIRSVGPALHLAPRAETRDGRFDFVCARTADRALLMEHFDARVAGKKSKSPLPTRRFRNLLIVWKGSTIHLDDELWRNKEKNKSSDEIKITVKPSALIVLHPAASIKT
Ga0184618_101281552	3300018071	Groundwater Sediment	LVLRFIWRHALATKDGQFDFVCARQADYALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKLWPEKKQSEKSSNEIKITVKPSALIILQPAAAVKI
Ga0066655_102575272	3300018431	Grasslands Soil	GPALYLAPRAGTRDGRFDFTCARPADSALLAKHFEARVDGKKSNSPLPARKFRKLRVVWKGPALHLDDNIWPKKKQSGKSSNEIEIRVKPSALIILQPAPMIKT
Ga0066669_117143492	3300018482	Grasslands Soil	SYLLWEAMNIHSVGPALYLAPRAAIRDGRFDFACARPADCALLAKHFDARVAGKKSKSPLPARKFRELRVVWNGSTLHLDDKLWPDKKQSQKSSSEIKITVKHSALIVLQPAPAVKT
Ga0173482_100832391	3300019361	Soil	RYLLWEAMNIRSVGPALHLAPQAATRDGRFDFVCARAADRTLLMEHFDARIAGKKSKSPLPTRRFRELRIASKGSTIHFDDKLWPDKERSRRSSSEIKITVKPSALIILQPAAIIKT
Ga0193705_10779682	3300019869	Soil	RALLMEHFDARVAGKKSKSPLPTQTFRELRIVWKGSTIHLDDELWRDKKNNKKSPDEIKITVKPSALIILQPAATIKT
Ga0193722_10228703	3300019877	Soil	MNIHSVGPALYLAPRAATRDGRFDFACARPADCALLAKHFDARVAGKKSNSPLLARKLRELRVVWNDSTLHFDDKLWPNKKQSQKSSSEIKITVKHSALIILQPAPAVKT
Ga0193755_11805122	3300020004	Soil	ARAADRAVLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRNKEKNKKSSDEIKITVKPSALIVLHPAATIKT
Ga0193734_10210132	3300020015	Soil	MNIRSVGPALHLAPRAETRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKNKSSDEIKITVKPSALIVLHPAASIKT
Ga0179594_102710141	3300020170	Vadose Zone Soil	DYALLLEHLDARVAGKKSKSPLPARRFRELRVVWKGSTLHLDDKLWPEKKQSEKSSNEIKITVKPSALIILQPAAAVKI
Ga0193709_10278912	3300021411	Soil	ARAADRALLMEHFDARVAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKNKSSDEIKITVKPSALIVLHPAASIKT
Ga0222621_10153741	3300021510	Groundwater Sediment	TRDGRFDFVCARTADRARLMEHFDARVAGRKSKSPLPTRRFRELRIVWKGSTIHLDDELWRDKKKNNSSDAIKITVKPSALIILQPAATIKT
Ga0222622_103177641	3300022756	Groundwater Sediment	FDARVAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKNKSSDEIKITVKPSALIVLHPAASIKT
Ga0222622_103730731	3300022756	Groundwater Sediment	PRAETRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKTNKSSDEIKITVKPSALIVLHPAASIKT
Ga0207702_118383141	3300026078	Corn Rhizosphere	PALYFAPRAATRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRKLRIAWKGSTIHLDDQLWRDKKKNDKSPDEIKITVKPSALIILQPSATIKT
Ga0209375_11434962	3300026329	Soil	MNIHSVGPALYLAPRAGTRDGRFDFTCARPADSALLAKHFEARVDGKKSNSPLPARKFRKLRVVWKGPALHLDDKLWPKKKQSGKAPNEIEITVKPSALIILQPAPMIKT
Ga0209057_10499741	3300026342	Soil	ARPADSALLAKHFEARVDGKRSNSPLPARKFRKLRVVWKGPALHLDDKLWPKKKQSGTSSNEIEITVKPSALIILQPAPAVKT
Ga0209056_103830372	3300026538	Soil	AMNIRSVGPALHLAPRAATRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRDKKRNKKSSDEIKITVKPSALIVLHPAASIKT
Ga0209474_100308393	3300026550	Soil	DGRFDFACARPADSALLAKHFEARVDGKKSNSPLPARKFRKLRVVWKGPALHLDDKLWPKKKQSGTSSNEIEITVKPSALIILQPAPAVKT
Ga0209474_101471063	3300026550	Soil	TKDGEFDFVCAREADRSVLMEHFDARLARKKSRFPLPTRRFRQLRIAWKGSTLHFDDELWPTKKQRPRDHGEIEIIVRPSALIILQPAASASI
Ga0179593_11262111	3300026555	Vadose Zone Soil	SVGPALHLAPRAETRDGRFDFVCARAADRALLMEHFDARVAGKKSKSPLPTRRFRDLRIVWKGSTIHLDDELWRNKKKNKKSSDEIKITVKPSALIVLPPAASIKT
Ga0208070_1011671	3300026665	Soil	ILWEAMNIHSVGPALYLAPRAATRDGRFDFACAHPADCALLAKHFDARVAGKKSKSPLPARKFRELRVVWKESTESTLHLDDKLWPDEKQRQKSSSEIKITVKLSALIILQPAPAVKT
Ga0208072_1029062	3300026791	Soil	TRDGRFDFACARPADCALLAKHFDARMAGKKSKSPLPARKFRELRVVWKESTESTLHLDDKLWPNDKQGQKSSSEIKITVKSSALIILQPAPAVKT
Ga0209626_11362832	3300027684	Forest Soil	VVEHALVPSSPDHLAPRAGTKDGRFDFACARPADCAVLAKHFEARVAGKKSKSPLPTRRFRELRIAWKGSTIHFDDKLWPDKKQSRRSPSEIKITVKPSALIILQPAAAIKT
Ga0209974_102332512	3300027876	Arabidopsis Thaliana Rhizosphere	MEHFDARIAGKKSKSPLPTRRFRELRIAWKGSTIHFDDKLWPDKKQSRRSSSEIKITVKPSALIILQPGAIIKT
Ga0307282_105414541	3300028784	Soil	SVGPALHLAPRAETRDGRFDFVCARTADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRNKKNKKSSDEIKITIKPSALIVLHPAAAIKT
Ga0307302_102680371	3300028814	Soil	HLAPRAETRDGRFDFVCARTADRALLMEHFDARVAGKKSKSPLPTRRFRELRIVWNGSTIHLDDELWRNKKNKKSSDEIKITIKPSALIVLHPAAAIKT
Ga0307308_101118161	3300028884	Soil	DRALLMEHFDARVAGKKSKSPLPTQTFRELRIVWKGSTIHLDDELWRDKKNNKKSPDEIKITVKPSALIILQPAATIKT
Ga0075386_120979542	3300030916	Soil	PALHLAPQAATKDGRFDFVCARAADRARLMEHFDARVPGKKSKSPLPTRRFRKLRIVWKGSTIHLDDQLWRDKKKNEKSPDEIKITVKPSALIILQPSATIKT
Ga0170824_1050370681	3300031231	Forest Soil	SVGPALHLAPRAETRDGRFDFVCARTADRGLLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRNKKKDKKSSDEITITVKPSALIILQPAATIKT
Ga0170824_1102834982	3300031231	Forest Soil	MNIHSVGPALYLAPRPATKDGRFDFACARPADCALLAKHFDARVAGKKGKSSLPGRKFRELRVVWKESTESTLHLDHKLWPDEKQRRKSSSEIKITVKPSALIILQPAPVVKT
Ga0170824_1128258442	3300031231	Forest Soil	MEHFDARVPGKKSKSPLPTRRFRKLRIIWKGSTIHLDDELWRDKKKTKKSVDEIKITVKPSALIILQPAAAIKT
Ga0170824_1236330433	3300031231	Forest Soil	LALPFIWRHAPRPKDGRFDFACARPADSALLAKHFDARVAGKKSKSSLPARKFRELRVVWKGSTESTLHLDDKLWPDEKQSQKSYSQIKITVKPSAL
Ga0170820_118108962	3300031446	Forest Soil	LALPFIWRHAPRPKDGRFDFACARPADSALLAKHFDARVAGKKSKSSLPARKFRELRVVWKGSTESTLHLDDKLWPDEKQSQKSYSQIKITVKPSALIILQAAPAVKT
Ga0170819_114671563	3300031469	Forest Soil	LALPFIWRHAPRPKDGRFDFACARPADSALLAKHFDARVAGKKSKSSLPARKFRELRVVWKESTESTLHLDDKLWPDEKQSQKSYSQIKITVKPSALIILQAAPAVKT
Ga0310813_116593661	3300031716	Soil	RFDFVCARAADRPLLMEHFDARVAGKKSKSPLPTRRFRELRIVWKGSTIHLDDELWRDKKKDKKPSDEIKIVVKPSALIVLHPAATIKT
Ga0307470_112942852	3300032174	Hardwood Forest Soil	VGPALHLAPRAETRDGRFDFVCARAADRALLMEHFDARVAGKKSKSALPTRRFRELRIVWKGPTIHLDDELWRNKEKSKKSSDEIKITVKPSALIVLHPAASIKT
Ga0310810_104925182	3300033412	Soil	EHFDARIAGKKSKSPLPTRRFRELRIAWKGSTIHFDDKLWPDTKQSRRSSSEIKITVKPSALIILQPGTIIKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099227

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences