NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098626

Metagenome / Metatranscriptome Family F098626

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098626
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 42 residues
Representative Sequence MELGLDQAIMDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Number of Associated Samples 63
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 79.61 %
% of genes near scaffold ends (potentially truncated) 28.16 %
% of genes from short scaffolds (< 2000 bps) 76.70 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (92.233 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(19.417 % of family members)
Environment Ontology (ENVO) Unclassified
(89.320 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(42.718 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.30%    β-sheet: 0.00%    Coil/Unstructured: 50.70%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00226DnaJ 22.33
PF00012HSP70 16.50
PF01909NTP_transf_2 14.56
PF01934HepT-like 6.80
PF01556DnaJ_C 4.85
PF00684DnaJ_CXXCXGXG 4.85
PF00575S1 2.91
PF01424R3H 0.97
PF13620CarboxypepD_reg 0.97
PF13701DDE_Tnp_1_4 0.97
PF01809YidD 0.97
PF14489QueF 0.97
PF00009GTP_EFTU 0.97
PF00216Bac_DNA_binding 0.97
PF09360zf-CDGSH 0.97
PF00962A_deaminase 0.97
PF13411MerR_1 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0443Molecular chaperone DnaK (HSP70)Posttranslational modification, protein turnover, chaperones [O] 16.50
COG0484DnaJ-class molecular chaperone with C-terminal Zn finger domainPosttranslational modification, protein turnover, chaperones [O] 9.71
COG2361HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 6.80
COG2445Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 familyGeneral function prediction only [R] 6.80
COG0759Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJCell wall/membrane/envelope biogenesis [M] 0.97
COG0776Bacterial nucleoid DNA-binding protein IHF-alphaReplication, recombination and repair [L] 0.97
COG1816Adenosine/6-amino-6-deoxyfutalosine deaminaseNucleotide transport and metabolism [F] 0.97
COG1847Predicted RNA-binding protein Jag (SpoIIIJ-associated), conains KH and R3H domainsGeneral function prediction only [R] 0.97

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.23 %
UnclassifiedrootN/A7.77 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004152|Ga0062386_100314353All Organisms → cellular organisms → Bacteria → Acidobacteria1251Open in IMG/M
3300004401|Ga0068980_1134981Not Available680Open in IMG/M
3300004470|Ga0068967_1255187All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1018Open in IMG/M
3300004601|Ga0068934_1233931All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300008786|Ga0103639_1003954All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium661Open in IMG/M
3300009518|Ga0116128_1035365All Organisms → cellular organisms → Bacteria1635Open in IMG/M
3300009518|Ga0116128_1035545All Organisms → cellular organisms → Bacteria1631Open in IMG/M
3300009518|Ga0116128_1044135All Organisms → cellular organisms → Bacteria1427Open in IMG/M
3300009518|Ga0116128_1045525All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300009519|Ga0116108_1037555All Organisms → cellular organisms → Bacteria1575Open in IMG/M
3300009547|Ga0116136_1011276All Organisms → cellular organisms → Bacteria3248Open in IMG/M
3300009548|Ga0116107_1068149All Organisms → cellular organisms → Bacteria1145Open in IMG/M
3300009549|Ga0116137_1057917All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1233Open in IMG/M
3300009615|Ga0116103_1026093All Organisms → cellular organisms → Bacteria1814Open in IMG/M
3300009617|Ga0116123_1120781All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300009618|Ga0116127_1079564All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300009621|Ga0116116_1052812All Organisms → cellular organisms → Bacteria1219Open in IMG/M
3300009629|Ga0116119_1035802All Organisms → cellular organisms → Bacteria1319Open in IMG/M
3300009629|Ga0116119_1108884All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium695Open in IMG/M
3300009636|Ga0116112_1153206All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300009760|Ga0116131_1234120All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300009839|Ga0116223_10038729All Organisms → cellular organisms → Bacteria3184Open in IMG/M
3300010339|Ga0074046_10160412All Organisms → cellular organisms → Bacteria1430Open in IMG/M
3300010339|Ga0074046_10899885All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium514Open in IMG/M
3300011080|Ga0138568_1064986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium601Open in IMG/M
3300011089|Ga0138573_1202903All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium579Open in IMG/M
3300014156|Ga0181518_10159741All Organisms → cellular organisms → Bacteria1201Open in IMG/M
3300014156|Ga0181518_10518157Not Available563Open in IMG/M
3300014158|Ga0181521_10380360All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300014164|Ga0181532_10780023All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300014638|Ga0181536_10515194All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300017823|Ga0187818_10295392All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium711Open in IMG/M
3300017925|Ga0187856_1021764All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3248Open in IMG/M
3300017925|Ga0187856_1067160All Organisms → cellular organisms → Bacteria1507Open in IMG/M
3300017925|Ga0187856_1229826All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium661Open in IMG/M
3300017929|Ga0187849_1067276All Organisms → cellular organisms → Bacteria1604Open in IMG/M
3300017929|Ga0187849_1067973All Organisms → cellular organisms → Bacteria1593Open in IMG/M
3300017931|Ga0187877_1306257All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300017931|Ga0187877_1336718All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300017934|Ga0187803_10413438All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
3300017935|Ga0187848_10263956All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae724Open in IMG/M
3300017941|Ga0187850_10036600All Organisms → cellular organisms → Bacteria2630Open in IMG/M
3300017943|Ga0187819_10460267All Organisms → cellular organisms → Bacteria → Acidobacteria727Open in IMG/M
3300017955|Ga0187817_10073780All Organisms → cellular organisms → Bacteria → Acidobacteria2126Open in IMG/M
3300017961|Ga0187778_10381979All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium922Open in IMG/M
3300017972|Ga0187781_10273299All Organisms → cellular organisms → Bacteria → Acidobacteria1197Open in IMG/M
3300017975|Ga0187782_10048934All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3078Open in IMG/M
3300017975|Ga0187782_10250534All Organisms → cellular organisms → Bacteria → Acidobacteria1331Open in IMG/M
3300017975|Ga0187782_10354637Not Available1111Open in IMG/M
3300017975|Ga0187782_11646811All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium507Open in IMG/M
3300018004|Ga0187865_1298370All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
3300018005|Ga0187878_1248677All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
3300018005|Ga0187878_1375364All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300018008|Ga0187888_1249574All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium691Open in IMG/M
3300018017|Ga0187872_10183368Not Available977Open in IMG/M
3300018018|Ga0187886_1254380All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300018030|Ga0187869_10115228All Organisms → cellular organisms → Bacteria1350Open in IMG/M
3300018033|Ga0187867_10074725All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1998Open in IMG/M
3300018040|Ga0187862_10868659All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
3300018057|Ga0187858_10142273All Organisms → cellular organisms → Bacteria1604Open in IMG/M
3300018057|Ga0187858_10351195All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300018085|Ga0187772_10582899Not Available794Open in IMG/M
3300018086|Ga0187769_10294065Not Available1213Open in IMG/M
3300018086|Ga0187769_10380643All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300018086|Ga0187769_11397977All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium529Open in IMG/M
3300018088|Ga0187771_10104813All Organisms → cellular organisms → Bacteria2283Open in IMG/M
3300018088|Ga0187771_10290404All Organisms → cellular organisms → Bacteria → Acidobacteria1369Open in IMG/M
3300018088|Ga0187771_10324754All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1291Open in IMG/M
3300018088|Ga0187771_11030485All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium698Open in IMG/M
3300018090|Ga0187770_11026988All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium664Open in IMG/M
3300018090|Ga0187770_11179781All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium619Open in IMG/M
3300019275|Ga0187798_1207489All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300019284|Ga0187797_1297281Not Available857Open in IMG/M
3300019284|Ga0187797_1299071All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium641Open in IMG/M
3300025459|Ga0208689_1094915All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300025469|Ga0208687_1032019All Organisms → cellular organisms → Bacteria1393Open in IMG/M
3300025507|Ga0208188_1005964All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4316Open in IMG/M
3300027854|Ga0209517_10150351All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1491Open in IMG/M
3300027896|Ga0209777_10348851Not Available1128Open in IMG/M
3300032069|Ga0315282_10012547All Organisms → cellular organisms → Bacteria12954Open in IMG/M
3300032893|Ga0335069_10267478All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium2048Open in IMG/M
3300033402|Ga0326728_10003387All Organisms → cellular organisms → Bacteria49746Open in IMG/M
3300033402|Ga0326728_10014955All Organisms → cellular organisms → Bacteria → Acidobacteria16294Open in IMG/M
3300033402|Ga0326728_10017025All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae14671Open in IMG/M
3300033402|Ga0326728_10026250All Organisms → cellular organisms → Bacteria10330Open in IMG/M
3300033402|Ga0326728_10032109All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8768Open in IMG/M
3300033402|Ga0326728_10097452All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3584Open in IMG/M
3300033402|Ga0326728_10988398All Organisms → cellular organisms → Bacteria → Acidobacteria584Open in IMG/M
3300033405|Ga0326727_10379852All Organisms → cellular organisms → Bacteria1313Open in IMG/M
3300033405|Ga0326727_10945074All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium637Open in IMG/M
3300033977|Ga0314861_0000637All Organisms → cellular organisms → Bacteria53065Open in IMG/M
3300033977|Ga0314861_0000786All Organisms → cellular organisms → Bacteria46225Open in IMG/M
3300033977|Ga0314861_0000943All Organisms → cellular organisms → Bacteria41390Open in IMG/M
3300033977|Ga0314861_0000997All Organisms → cellular organisms → Bacteria39971Open in IMG/M
3300033977|Ga0314861_0003835All Organisms → cellular organisms → Bacteria13898Open in IMG/M
3300033977|Ga0314861_0003964All Organisms → cellular organisms → Bacteria13521Open in IMG/M
3300033977|Ga0314861_0005709All Organisms → cellular organisms → Bacteria → Acidobacteria10269Open in IMG/M
3300033977|Ga0314861_0019670All Organisms → cellular organisms → Bacteria4309Open in IMG/M
3300033977|Ga0314861_0083910All Organisms → cellular organisms → Bacteria1662Open in IMG/M
3300033977|Ga0314861_0133831All Organisms → cellular organisms → Bacteria → Acidobacteria1227Open in IMG/M
3300033977|Ga0314861_0398760All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium603Open in IMG/M
3300033977|Ga0314861_0480712All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300033982|Ga0371487_0315590All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium699Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland19.42%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland18.45%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland15.53%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland14.56%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil9.71%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil6.80%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog4.85%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.88%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.94%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.97%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.97%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.97%
Wetland SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004401Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004470Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004601Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300008786Microbial communities from wetland soil in Czech Republic - M3_cDNAEnvironmentalOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009547Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40EnvironmentalOpen in IMG/M
3300009548Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100EnvironmentalOpen in IMG/M
3300009549Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100EnvironmentalOpen in IMG/M
3300009615Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100EnvironmentalOpen in IMG/M
3300009617Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100EnvironmentalOpen in IMG/M
3300009618Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100EnvironmentalOpen in IMG/M
3300009621Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150EnvironmentalOpen in IMG/M
3300009629Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100EnvironmentalOpen in IMG/M
3300009636Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150EnvironmentalOpen in IMG/M
3300009760Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100EnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300011080Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011089Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018004Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100EnvironmentalOpen in IMG/M
3300018005Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150EnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018018Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019275Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019284Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025459Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025469Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025507Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027896Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)EnvironmentalOpen in IMG/M
3300032069Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033977Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75EnvironmentalOpen in IMG/M
3300033982Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fractionEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062386_10031435313300004152Bog Forest SoilMELGLDQAIMDSPAAREIQHQLQEWLRSRCPDHLGAILEKMKN*
Ga0068980_113498123300004401Peatlands SoilMELGLDQAIMDSPAAQEIQHQLQEWLRSRCPDHLGAILEKMKN*
Ga0068967_125518723300004470Peatlands SoilMELGLDQAIMDSPAAREIQHQLEEWLRSRCPDHLGAIMEKMKN*
Ga0068934_123393123300004601Peatlands SoilMELMEQTIMDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN*
Ga0103639_100395423300008786Wetland SoilMELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGAIMEKMKN*
Ga0116128_103536513300009518PeatlandMELGLDQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMEKMKN*
Ga0116128_103554513300009518PeatlandMELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGPIMAKMKN*
Ga0116128_104413533300009518PeatlandMELGLDQAIMDTPVAREIQRQLQEWLRSRCPDHLGPIMAKMRN*
Ga0116128_104552513300009518PeatlandMELGLEQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMAKMKN*
Ga0116108_103755513300009519PeatlandQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMEKMKN*
Ga0116136_101127623300009547PeatlandVELGLEQAIMDTPMAREIQRQLQEWLCSRCPDHLNLILEKMKN*
Ga0116107_106814923300009548PeatlandMELGLDQAILDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN*
Ga0116137_105791733300009549PeatlandMELSLDQAIMDSPMAREIQRQLQEWLRSRCPDHLGAIMEKMKN*
Ga0116103_102609313300009615PeatlandMELGLEQAIMDTPVAREIQHHLQEWLRSRCTDHLDPIMEKMKN*
Ga0116123_112078113300009617PeatlandMELGLDQAILDTPVAREIQRQLQEWLRSRFPDHLGAIMEKMKN*
Ga0116127_107956433300009618PeatlandIMDTPVAREIQHHLQEWLRSRCPDHLDPIMAKMKN*
Ga0116116_105281213300009621PeatlandQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMAKMKN*
Ga0116119_103580213300009629PeatlandWRQFVELGLEQAIMDTPMAREIQRQLQEWLCSRCPDHLNLILEKMKN*
Ga0116119_110888423300009629PeatlandVELGLEQAIMDTPMAREIQRQLQEWLCSRCPDHLN
Ga0116112_115320613300009636PeatlandQAIMDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN*
Ga0116131_123412013300009760PeatlandELGLEQAIMDTPMAREIQRQLQEWLCSRCPDHLGPIMEKMKN*
Ga0116223_1003872923300009839Peatlands SoilMELGLDQAILDTPAAREIQRALQEWLRSRCPDHLGAIMEKMKN*
Ga0074046_1016041223300010339Bog Forest SoilMELSLDQAIMDSPVAREIQRQLQEWLRSRCPDHLGAIMEKMEN*
Ga0074046_1089988523300010339Bog Forest SoilMELSLDQAIMDSPMAREIQRQLQEWLRSRCPDHLNAIMETMKN*
Ga0138568_106498623300011080Peatlands SoilMELGLDQAIMDSPAAREIQHQLEEWLRSRCPDHLGAIMEKM
Ga0138573_120290323300011089Peatlands SoilMELSLDQKIMDSPMAREIQHELQEWLRSRCPDHLGAIMDKMK
Ga0181518_1015974123300014156BogMELGLDLAIMDTPVAREIQHQLQEWLRSRCPDHLGPIMEKMKN*
Ga0181518_1051815713300014156BogDQAIMDSPAAQEIQHQLQEWLRSRCPDHLGAILEKMKN*
Ga0181521_1038036033300014158BogMELGLDQDIMDTPEAREIHRQLQEWLRSRCPDHLGAIMEKMKN*
Ga0181532_1078002313300014164BogSIMETPEAREIQHQLQEWLRSRCPDHLGEIMAKMKN*
Ga0181536_1051519423300014638BogGLDQDIMDTPEAREIHRQLQEWLRSRCPDHLGAIMEKMKN*
Ga0187818_1029539223300017823Freshwater SedimentMELSLDQAIMDTPAAREIQRQLQEWLRARCPDHLGAIMEKMKN
Ga0187856_102176423300017925PeatlandVELGLEQAIMDTPMAREIQRQLQEWLCSRCPDHLNLILEKMKN
Ga0187856_106716023300017925PeatlandMELGLEQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMAKMKN
Ga0187856_122982613300017925PeatlandMELGLDLAIMDTPVAREIQHQLQEWLRSRCPDHLGP
Ga0187849_106727613300017929PeatlandMELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGPIMAKMKN
Ga0187849_106797323300017929PeatlandMELGLDQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMEKMKN
Ga0187877_130625713300017931PeatlandAIMDTPMAREIQRQLQEWLCSRCPDHLNLILEKMKN
Ga0187877_133671823300017931PeatlandMELGLDQAILDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187803_1041343823300017934Freshwater SedimentMELSLDQAIMDTPVAGEIQRELQEWLRSRCPDHLGAIMEKMKN
Ga0187848_1026395623300017935PeatlandMELGLDQAIMDSPAAREIQHQLEEWLRSRCPDHLGAIMEKMKN
Ga0187850_1003660033300017941PeatlandMELGLDQAIMDTPVAREIQRQLQEWLRSRCPDHLGPIMAKMRN
Ga0187819_1046026713300017943Freshwater SedimentIMDTPAAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187817_1007378023300017955Freshwater SedimentMELSLDQGIMDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187778_1038197923300017961Tropical PeatlandMELSLDQAIMDTPVAREIQRELQEWLRSRCPDHLGALLQKMKN
Ga0187781_1027329913300017972Tropical PeatlandMELGLDQAIMESPMAKEIQHQLQEWLRSRCPDHLGAIMEKMKN
Ga0187782_1004893423300017975Tropical PeatlandMELGLDQAIMDTPVAKEIQRQLQEWLRSRCPDHLGALLQKMKN
Ga0187782_1025053423300017975Tropical PeatlandMELGIDQAIMESPVAKEIQRQLQEWLRSRCPDHLGEIMEKMKN
Ga0187782_1035463723300017975Tropical PeatlandMELGLDKAILDSPVAREIQRELQEWLRSRCPDHLGALLEKMKN
Ga0187782_1164681113300017975Tropical PeatlandMELGLEQAIMDTPVAREIQHQLQEWLRSRCPDHLGAIMEKMKN
Ga0187865_129837013300018004PeatlandMELGLDLAIMDTPVAREIQHQLQEWLRSRCPDHLGAIMEKMKN
Ga0187878_124867723300018005PeatlandMELNLDQGIMDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187878_137536413300018005PeatlandQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMEKMKN
Ga0187888_124957433300018008PeatlandMELSLDQGIMASPEAKEIQRQLQEWLRSRCPDHLNLILEKMKN
Ga0187872_1018336833300018017PeatlandMELGLDLAIMDTPVAREIQHQLQEWLRSRCPDHLGPIMEKMKN
Ga0187886_125438033300018018PeatlandELGLDQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMEKMKN
Ga0187869_1011522813300018030PeatlandIMDTPVAREIQHHLQEWLRSRCPDHLDPIMEKMKN
Ga0187867_1007472523300018033PeatlandMELGLDQAIMDSPAAQEIQHQLQEWLRSRCPDHLGAILEKMKN
Ga0187862_1086865913300018040PeatlandMELGLDLAIMDTPVAREIQHQLQEWLRSRCPDHLGSIMEKMRN
Ga0187858_1014227313300018057PeatlandMELGLDQAIMDTPVAREIQHQLQEWLRSRCPDRLGPIMAKMKN
Ga0187858_1035119533300018057PeatlandFVELGLEQAIMDTPMAREIQRQLQEWLCSRCPDHLNLILEKMKN
Ga0187772_1058289913300018085Tropical PeatlandLGLDQAIMESPEAQEIQRQLQEWLRSRCPDHLGEIMEKMKN
Ga0187769_1029406513300018086Tropical PeatlandMELSLDQAIMDTPVASEIQRQLQEWLRSRCPDHLGALLQKMKN
Ga0187769_1038064323300018086Tropical PeatlandMELSLDQAIMDTPAAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187769_1139797713300018086Tropical PeatlandMELSFDQAIMDSPAAKEIQRQLQEWLRSRCPDHLGAIM
Ga0187771_1010481313300018088Tropical PeatlandIMDSPAAKEIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187771_1029040423300018088Tropical PeatlandMELGLDQAIMDTPVASEIQRELQEWLRSRCPDHLGALLQKMKN
Ga0187771_1032475423300018088Tropical PeatlandMELGLDQAIMESPMAKEIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187771_1103048523300018088Tropical PeatlandMELSLDQAIMDSPMAREIQRQLQEWLRSRCPDHLGAIMEHMKN
Ga0187770_1102698823300018090Tropical PeatlandMELSLDTAIMDTPVAREIQRELQEWLRSRCPDHLGALMEK
Ga0187770_1117978113300018090Tropical PeatlandMELSLDQAIMDSPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187798_120748923300019275PeatlandMELGLDQAIMESPVAKEIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187797_129728113300019284PeatlandMELSLDQAIMDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0187797_129907123300019284PeatlandMELGLDTAIMDSPAAREIQHQLQEWLRSRCPDHLGAIMEKMKN
Ga0208689_109491523300025459PeatlandAILDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0208687_103201953300025469PeatlandGLDQAIMDTPVAREIQHHLQEWLRSRCPDHLDPIMEKMKN
Ga0208188_100596423300025507PeatlandMELGLDQAIMDSPAAREIQHQLQEWLRSRCPDHLGAIMEKMKN
Ga0209517_1015035123300027854Peatlands SoilMELGLDQAILDTPAAREIQHELQEWLRSRCPDHLGAIMEKMKN
Ga0209777_1034885123300027896Freshwater Lake SedimentMELGLDQAIMDTPVAREIQHHLQEWLRSRCPDHLDPVMEKMKN
Ga0315282_10012547133300032069SedimentMELNLDLAIMDTPVAREIQRELEEWLRSRCPDHLGSIMEKMKN
Ga0335069_1026747823300032893SoilMELGMDQPIMDTPAAREIQRQLQEWLLLRCPDHLGAIMEKVKN
Ga0326728_10003387133300033402Peat SoilMELGLDQAIMDTPAAREIQRQLQEWLRTRCPDHLGAIMEKMKN
Ga0326728_10014955113300033402Peat SoilMELGLDQALMDSPAAREIQRELQEWLRSRCPDHLGASMEKMKN
Ga0326728_1001702553300033402Peat SoilMELGLDQDIMDTPAAREIQRQLQEWLRSRCPDHLSAIMETMKN
Ga0326728_1002625043300033402Peat SoilMELGLDQAIMDTPVAREIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0326728_1003210963300033402Peat SoilMEMGLDQAIMDSPAAQEIQHQLQEWLRSRCPDHLGAILEKMKN
Ga0326728_1009745223300033402Peat SoilMELGLDQAIMDSPAAREIQHQLQEWLRSRCPDHLGAILEKMKN
Ga0326728_1098839813300033402Peat SoilDQDIMDTPAAREIQRQLQEWLRSRCPDHLSAVMETMKN
Ga0326727_1037985213300033405Peat SoilMELSLDQAIMDSPVAREIQRQLQEWLRSRCPDHLGAIMEKMK
Ga0326727_1094507423300033405Peat SoilMELSLDQAIMDSPMAREIQRELQEWLRSRCPDHLGAIMEKMKN
Ga0314861_0000637_24798_249293300033977PeatlandMELSLESAIMDTPMAKEIQRELQEWLRSRCPDHLGALMEKMKN
Ga0314861_0000786_17462_175933300033977PeatlandMELGLDQAIMDTPVAREIQRELQEWLRSRCPDHLGAIMETMKN
Ga0314861_0000943_4314_44453300033977PeatlandMELGLDQAVMDTPVAREIQRQLQEWLRSRCPDHLGVIMETMKN
Ga0314861_0000997_26046_261773300033977PeatlandMELGLDQAIMDTPVAREIQRHLQEWVRSRCPDHLGAIMEQMKN
Ga0314861_0003835_2183_23143300033977PeatlandMELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGEIMEKMKN
Ga0314861_0003964_872_10033300033977PeatlandMELSLDQAIMDSPMATEIQRQLQEWLRSRCPDHLGAIMEKMKN
Ga0314861_0005709_3239_33703300033977PeatlandMELSLDQAIMDTPVARQIQHELQEWLRSRCPDHLGAIMEHMKN
Ga0314861_0019670_445_5763300033977PeatlandMELSLDQAIMDSPMAKEIQRQLQEWLRSRCPDHLNAIMETMKN
Ga0314861_0083910_1475_16063300033977PeatlandMELGLDEAIMDTPVAREIQHQLQEWLRSRCPDHLGEIMEKMRN
Ga0314861_0133831_864_9953300033977PeatlandMELSSDQAIMDTPVAREIQRELQEWLRSRCPDHLGALLQKMKN
Ga0314861_0398760_121_2523300033977PeatlandMELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGAVMEKMKN
Ga0314861_0480712_346_4773300033977PeatlandMELSLDQAIMDSPMAKEIQHQLEEWLRSRCPDHLGAIMEKMKN
Ga0371487_0315590_421_5523300033982Peat SoilMELSLDQAIMDSPMAREIQRQLQEWLRSRCPDHLGAIMEKMKN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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