Metagenome Family F098361

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098361
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	56 residues
Representative Sequence	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKG
Number of Associated Samples	4
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.09 %
% of genes near scaffold ends (potentially truncated)	1.94 %
% of genes from short scaffolds (< 2000 bps)	4.85 %
Associated GOLD sequencing projects	4
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (89.320 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Root (97.087 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.90% β-sheet: 0.00% Coil/Unstructured: 56.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF03732	Retrotrans_gag	10.68
PF00078	RVT_1	6.80
PF13650	Asp_protease_2	5.83
PF10536	PMD	0.97
PF00665	rve	0.97
PF13456	RVT_3	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.97
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.97
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.97
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
All Organisms	root	All Organisms	10.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
cellular organisms	root	All Organisms → cellular organisms	10.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	10.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	10.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	10.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	8.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	8.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	7.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	6.80 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	6.80 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Sorghinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae	6.80 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Sorghum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum	6.80 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.32 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	6.80 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300014486\|Ga0182004_10040774	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	2943	Open in IMG/M
3300014486\|Ga0182004_10044417	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2728	Open in IMG/M
3300014486\|Ga0182004_10047222	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2584	Open in IMG/M
3300014486\|Ga0182004_10048755	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2510	Open in IMG/M
3300014486\|Ga0182004_10054441	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	2272	Open in IMG/M
3300014486\|Ga0182004_10056584	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	2192	Open in IMG/M
3300014486\|Ga0182004_10073642	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1708	Open in IMG/M
3300014486\|Ga0182004_10082700	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1532	Open in IMG/M
3300014486\|Ga0182004_10115524	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1117	Open in IMG/M
3300014486\|Ga0182004_10162302	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	820	Open in IMG/M
3300014486\|Ga0182004_10190157	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	715	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	97.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	97.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	97.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.91%

Habitat	Taxonomy	Distribution
Root	Host-Associated → Plants → Roots → Unclassified → Unclassified → Root	97.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300014486	Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG	Host-Associated	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0182004_1000285715	3300014486	Root	MEFLAPFSDDEEIDFPDQIAQLALDPMTAIFEKPADDERQHLKALFVKGRVDGQPMTKILVDGGY*
Ga0182004_1000578312	3300014486	Root	MVFMLPVEFLAPTSDDEVLDFSDQIAQLALDPMTAIFEKPADNERQHLKALFVK*
Ga0182004_1000601810	3300014486	Root	MEFLAPSSDEAETVLSDQIAQLAVDPMMAVFEKPSNDERQHLKALFVKGRVDG*
Ga0182004_100098237	3300014486	Root	MSTWCSCRRWCFLAPYSDDEEISFPDQIAQLALDPMTAIFEKPFDDERQHLKALFVKGKVDG*
Ga0182004_100196114	3300014486	Root	MLAMEFLAPSSDDEEMDFSDQIAQLALDPMTAIFEKPTNNEPDQML*
Ga0182004_100236949	3300014486	Root	MVFMLPMEFLAPFSDDEEADFPDQIAQLALDPMMAIFEKPADNERQHLEALFVKGRVD*
Ga0182004_100253445	3300014486	Root	MEFLAPFSDDEEADFPDQIAQLALDPMMVVFEKPADNGRQHLKALFVKGRVDG*
Ga0182004_100277691	3300014486	Root	MVFMLPMEFLAPSSDDDGVDFSDQIAQLALDPMTAIFEKLANNERQHLKALFV
Ga0182004_100285122	3300014486	Root	MEFLAPSSDDELGFSDQIAQLALDPMTAILEKPADDERQHLKALFVKGRVDGVDGP*
Ga0182004_100346021	3300014486	Root	MVFMLPMEFLASSSDDEEVDFSNQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDG
Ga0182004_100352342	3300014486	Root	MVFMLPMEFLAPSSDDEELEFSDQIAQLALDPMTAIFEKSTDNERQHLKALFVKGRVDG*
Ga0182004_100368256	3300014486	Root	MVFMLPMEFLAPSSDDEELDFSDQIAKLALDPMTAIFGKPADNERQHLKALFVKGRVDG*
Ga0182004_100407744	3300014486	Root	MVFMLPIEFLAPSSDDEEVDFSDQIAQLALDPMTAIFEKPADNERQHLKALFVNGRVDSAADDQDTC*
Ga0182004_100437682	3300014486	Root	MVFMLPMDFLAPSDEEEEVILSDQVAQLALDPLMAIFEKPTDDER*
Ga0182004_100439993	3300014486	Root	MVFILSMEFLAPSSDDEELDFSDQIAQLALDPMTAIFEKPADNER*
Ga0182004_100444174	3300014486	Root	MVFMLPMEFLASSSNDEELEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDG*
Ga0182004_100472222	3300014486	Root	MEFLAPSSDDEEVDLSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDG*
Ga0182004_100487553	3300014486	Root	MVFMLPMEFVAPSSEDEEPDFSDQIAQLALDPMTAIFEKPTDNES*
Ga0182004_100504346	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKDLFVKGRVDGQPMTK
Ga0182004_100522251	3300014486	Root	MVFMLLMEFLAPSSDDEELELSNQIAQLALDPMTAIFEKPANNERQHLKALFVKGRV
Ga0182004_100522344	3300014486	Root	MVLMLPMEFLAPSSDDEELDFSDQIAQLALDPMTAIFEKPADNER*
Ga0182004_100528384	3300014486	Root	MEFLAPFSDDEEVDFPDQIAQLALDPMMAIFEKPTDNERQDLKALFVKGRVDGNR*
Ga0182004_100544413	3300014486	Root	MVFMPPMEFLAPSSEDEDLDFSDQIAQLALDPMTTIFEKPTDNERQHLKALFLKGRVDG*
Ga0182004_100565842	3300014486	Root	MVFILPMEFLAPSSDDEELEFSNQIAQLALDPMTAIFEKPTDTERQHLKALFVR*
Ga0182004_100585113	3300014486	Root	MVFMLPIEFLAPFSDAEEINFPDDQIAQLVLDPMTAIFEKPSDDERQHLKALFVKGQVDG
Ga0182004_100629591	3300014486	Root	MVFMLPMEFLAPSSDDEGLDFSDQIAQLALDPMTAIFEKPTDNERQHLKAL
Ga0182004_100633585	3300014486	Root	SNEDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGRVDGQPMTKI*
Ga0182004_100633822	3300014486	Root	MLPMEFLAPFTDDEEVDFSNQIAQLALDPMMAIFEKIADSERHHLKALFVKQG*
Ga0182004_100642421	3300014486	Root	MVFMLPMEFLAPSSDDEGLEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVD
Ga0182004_100676531	3300014486	Root	MVFMLPMEFLAPSSDDEELEFSDLIAQLALDPMTAIFENPVDNEKQHLKALFVKGRVDGHPMTK
Ga0182004_100692871	3300014486	Root	MVFMLPMEFLTPFSDDEEEDFPDQIAQLALDPMTAMFEKPSDDERQHLKALFVKGRIDG
Ga0182004_100719143	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQVAQLALDPMTAIFEKPADDER*
Ga0182004_100720152	3300014486	Root	MVFMLPMEFLAPSSDDEELEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVK*
Ga0182004_100736423	3300014486	Root	MVFILPMEFLVPSSDDEELDFSDQIAQLALDPMIAIFEKPADNERQHLKALFV*
Ga0182004_100773152	3300014486	Root	MVFMLPMEFLAPSSDDEELEFSDQIAQLALDAMTAIFEKPADNERQHLKALFVKGRVDG*
Ga0182004_100807452	3300014486	Root	MVFMLPMEFLAPSSDDEELDFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDW*
Ga0182004_100825842	3300014486	Root	MLPLEFLAPSSDEEEIVLSDQISHLTLDPMMVVFEKPTDDERQHLKALFVKGRVDGQPM
Ga0182004_100827002	3300014486	Root	MEFLVPSSDDEGLEFSGQIAQLALDPMTAIFEKPADNERQHLKALFVKGRIDGRQ*
Ga0182004_100850223	3300014486	Root	MVFMLPMEFLAPFSDHEEVNLPNQIAQLALDPMMAIFEKPSDDERQHLKALFVKGRVDG*
Ga0182004_100868992	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVK*
Ga0182004_100882133	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALGPMTAVFEKPADDERQHLKALFVK*
Ga0182004_100882533	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALLSREEWMVSR
Ga0182004_100888283	3300014486	Root	MVFMLLMEFLAPSSDDEELGFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDG*
Ga0182004_100896181	3300014486	Root	MVFMLPMEFLAPSNDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGKVDGQPMTKI
Ga0182004_100920372	3300014486	Root	MVFMLPMEFLAPSSDDEELDFSDQIAQLALDPMTAIFEKSADNGR*
Ga0182004_100926581	3300014486	Root	MVFMLPMEFLALSSDDEELDFSDQIAQLAMDPMTAIFEKPADNERQHLKALFVKERVDC*
Ga0182004_100933383	3300014486	Root	MVFMLPMEFLSPSSDDELEFSDQIAQLALDPMTAIFEKPTDDERQHLKLCLLKEEWMVSR
Ga0182004_100982514	3300014486	Root	MFPMEFIAPSSDDEELDFSDQIAQLALDPMTAIFEKPADNERQHLK
Ga0182004_101007221	3300014486	Root	MVFMLPMEFLAPFSDDEELDFPGQIAQLALDPMTAIFEKTADNERQHC*
Ga0182004_101012432	3300014486	Root	MVFMLLMKFLAPSSDDEELEFSDQIAQLALDPMMAIFEKPADNERQHLKALEGLIISQ*
Ga0182004_101041051	3300014486	Root	MLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVK*
Ga0182004_101050493	3300014486	Root	MVFMLPMEFLAPSSDDEELEFSDQIAQLALDPMIAIFEKPADNER*
Ga0182004_101051181	3300014486	Root	MVFMLPMEFLAPTSDDGELEFSDQIAQLALDPMTAIFEKPVDNERQHLKALFVKGRVDGQPMTKI
Ga0182004_101057754	3300014486	Root	GKGPSADVNMVFMLPMEFLAPSSDDELEFPDQIAQLALDPMTAIFEKPADDER*
Ga0182004_101065612	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADNERQHIKALFVKGRVDGQPKT*
Ga0182004_101071302	3300014486	Root	MVFMLPMEFLAPSSDDEVEFSNQIAQLALDPMTAIFEKPADDERQHLKALFVKGRVDGQPMT
Ga0182004_101073432	3300014486	Root	MMPMEFLAPSSDDEELEFSDQIAQLALDPMTAIFEKPVDNKRQHLKALFVKGRVDG*
Ga0182004_101088271	3300014486	Root	MVFMLLMEFLAPSSDDEELDFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDGQPMT
Ga0182004_101088352	3300014486	Root	MVFMLPIEFLAPSSDDEELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGRVD*
Ga0182004_101089122	3300014486	Root	MVFMLPMEFLAPSSDDEVEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGKVDGQPMT
Ga0182004_101093842	3300014486	Root	MVFMLPMEFLAPSSDDEMGFSDQIAQLALDPMTAIFENPADDERQHLKALFVKGKVDGQP
Ga0182004_101108432	3300014486	Root	MVFMLPMEFLAPSSDGELEFSDQIAQLALDPMTAIFEKPADNERQHLMALFVKGRVDGQPMTKILVDGGAWERRSRFD*
Ga0182004_101155242	3300014486	Root	MEFMMPMEFLAPFSDDEEIDFPDQIAQLALDPMTAMFEKPSDVKRQHLLTVLKYQI*
Ga0182004_101163462	3300014486	Root	MAFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDER*
Ga0182004_101177031	3300014486	Root	MVFMLAMEFLAPSSDDEELDFSDQIAQLALDLMTAIFEKPADNERQHLKALFVKGTVDG*
Ga0182004_101180793	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKRTDDERQHLKALFVKGRVDG*
Ga0182004_101220252	3300014486	Root	MVFMLPMEFLAPSSDDELEFSNQIAQFALDLMTAIFEKLADDERQHLKALFIK*
Ga0182004_101263453	3300014486	Root	MVFMLPMEFLAPSSDDEELEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDGQPM
Ga0182004_101326052	3300014486	Root	MVFMLLMEFLAPTSDDEMDFSDQIAQLALDPMTTTFEKPADNERQHLKALFVKGRVDGQ
Ga0182004_101358312	3300014486	Root	MVFMLPMEFLTPSSDDEVEFSDQIAQLALDPMTAIFEKPADDERQHFKALFVK*
Ga0182004_101367711	3300014486	Root	MVFMLPMEFLAPSSDGVFEFFDQIAQLALDPMTAIFEKPADDERQHLKAL
Ga0182004_101427841	3300014486	Root	MVFMLPMEFLAPSSDDEVEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVK
Ga0182004_101456993	3300014486	Root	MVFMLPMEFLAPSSDDEELDFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKG
Ga0182004_101513081	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKG
Ga0182004_101525831	3300014486	Root	MVFMLRMEFLAPSSDDEVEFSDQIAQLALDPMTAIFENPADDERQHLKALFVKGKVDGQPMTKIL
Ga0182004_101539242	3300014486	Root	MVFMLPMEFLAPSRDDEELEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVD
Ga0182004_101605761	3300014486	Root	MVFGLPMEFLAPSSDDELGLSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGSMVSQ*
Ga0182004_101614581	3300014486	Root	NMVFMLPMEFLAPSSDDEVEFSDQIAQLALDPMTAIFEKPANDER*
Ga0182004_101623021	3300014486	Root	MVFMLPMEFLAPSSDDEELEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDGQPMT
Ga0182004_101630371	3300014486	Root	MVFMLPMEFLAPSSDDVELEFSDQIAQLALDPMTAVFEKPADNERQHLKALFVKGRVD
Ga0182004_101655301	3300014486	Root	MLPMEFLAPSSDDEMGFSDQIAHLALDPMTTIFEKPADDERQHLKALFVKGKVDGQPMTKILVD
Ga0182004_101681951	3300014486	Root	MEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFV
Ga0182004_101713091	3300014486	Root	VNMVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKAFLSKEGLMDSR*
Ga0182004_101728031	3300014486	Root	MVFVLPMEFLAPSSDDEELEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVKGRVDGQPMTKI
Ga0182004_101860721	3300014486	Root	MLPMEFLAPSSDDELEFSDQIAQLALDPMIAIFEKPADNERQHL
Ga0182004_101901572	3300014486	Root	MVFMLPMEFLAPSGDDEELEFSDQIAQLALDPMTAIFEKPADNERQHLKALFVK
Ga0182004_101923851	3300014486	Root	MVFMLPMEFLAPSSDDELEFSGQVAQLALDPMTAIFEKPADDERQHLKALFVKGRV
Ga0182004_101991552	3300014486	Root	LRRPGDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKG
Ga0182004_101993771	3300014486	Root	MVFMLLMEFRAPASDDELEFPDQIAQLALDPMTAIFEKPADDERQHLKALFLKGRVDGQPMT
Ga0182004_102049611	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDRIAQLALDPMTAIFEKPADDERQHLKALFVKGRVDGQP
Ga0182004_102055562	3300014486	Root	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFV
Ga0182004_102085592	3300014486	Root	MVFMLPMEFLAPSSDDEEEELDFSDQIAQLALDPMTAIFKKPADNERQHLKSLFLKGRVDGQPMT*
Ga0182004_102108822	3300014486	Root	KGPSADINMVFMLPMEFLAPSSDDELGFSDQIAQLALDPMTAIFEKPADDERQYLKALFVKGKVDGQPMTRF*
Ga0182004_102185571	3300014486	Root	MLPMEFLAPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGRVEGQPMTKILIDGG
Ga0182004_102327581	3300014486	Root	MVFMLPMEFLTPSSDGELEFSDQIAQLALDPMTAIFKKPADDERQHLKALFVKGKVDGQQ
Ga0182004_102337152	3300014486	Root	MVFMLLMEFLEPSSDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGRVDGQP
Ga0182004_102344871	3300014486	Root	MVFMLSMEFLAPSSDDEVEFSDQIAQLALDPMAAIFEKPADDERQHLKALFV
Ga0182004_102648171	3300014486	Root	MVFMLPMEFLAPSSNDEVEFSDQIAQLALDPMTAIFEKPTDDERQHLKA
Ga0182004_102708101	3300014486	Root	MVFMLPMEFLAPASDDELEFSDQIAQLALDPMTAIFEKPADDERQHLKALFL
Ga0182004_102837273	3300014486	Root	MVFMLPMEFLAPSSDDELGFSDQIAQLALDPMTAIFEKPADDERQHLKALFVKGRVDGQPMT
Ga0182006_12410361	3300015261	Rhizosphere	MVFMLPMEFLAPSSDDELEFSDQIAQLALDPMTAILEKPADDERQHLKALFVK
Ga0182007_102189572	3300015262	Rhizosphere	FLVPVSDDEEIDFPNQIDQLALDPMTAIFEKPSDDKRQHLKALFVKGRVDG*
Ga0182005_11871061	3300015265	Rhizosphere	MVFMLPMEFLALSSDDEELNFSDQIAQLALDPMTAIFEKPADNEMQHLKALFVKGRVDGQRM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098361

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences