Metagenome / Metatranscriptome Family F098306

Basic Information
Family ID	F098306
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	144 residues
Representative Sequence	ICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPTDVTR
Number of Associated Samples	46
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.96 %
% of genes near scaffold ends (potentially truncated)	37.50 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Most Common Taxonomy
Group	Unclassified (68.269 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (36.538 % of family members)
Environment Ontology (ENVO)	Unclassified (40.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.231 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.09% β-sheet: 0.00% Coil/Unstructured: 44.91%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF05957	DUF883	22.12
PF07332	Phage_holin_3_6	11.54
PF02537	CRCB	2.88
PF05532	CsbD	1.92

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	22.12
COG0239	Fluoride ion exporter CrcB/FEX, affects chromosome condensation	Cell cycle control, cell division, chromosome partitioning [D]	2.88
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
All Organisms	root	All Organisms	31.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
cellular organisms	root	All Organisms → cellular organisms	30.77 %
Viruses	superkingdom	All Organisms → Viruses	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	25.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	25.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	22.12 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	16.35 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	3.85 %
Isosphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
Lacipirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	16.35 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	3.85 %
Isosphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
Lacipirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	16.35 %
Singulisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera	0.96 %
Gimesia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.27 %
Lacipirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	16.35 %
Gimesia maris	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris	0.96 %
Singulisphaera acidiphila	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908009\|FWIRA_GRAM18401ESA64	Not Available	503	Open in IMG/M
2170459014\|G1P06HT01DZKL3	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris	532	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105645745	Not Available	1058	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105646237	Not Available	1489	Open in IMG/M
3300002568\|C688J35102_118548534	Not Available	570	Open in IMG/M
3300003571\|Ga0007419J51692_1112903	Not Available	560	Open in IMG/M
3300004114\|Ga0062593_100741844	Not Available	966	Open in IMG/M
3300004153\|Ga0063455_100143356	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1082	Open in IMG/M
3300004157\|Ga0062590_100948592	Not Available	811	Open in IMG/M
3300004157\|Ga0062590_101314493	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	713	Open in IMG/M
3300004643\|Ga0062591_101640981	Not Available	649	Open in IMG/M
3300004801\|Ga0058860_12192136	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1698	Open in IMG/M
3300005548\|Ga0070665_102407842	Not Available	529	Open in IMG/M
3300005718\|Ga0068866_11294582	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila	529	Open in IMG/M
3300005843\|Ga0068860_101410072	Not Available	718	Open in IMG/M
3300009098\|Ga0105245_12603154	Not Available	559	Open in IMG/M
3300009553\|Ga0105249_12241645	Not Available	619	Open in IMG/M
3300010045\|Ga0126311_11441721	Not Available	575	Open in IMG/M
3300010047\|Ga0126382_12165974	Not Available	534	Open in IMG/M
3300010147\|Ga0126319_1631357	Not Available	527	Open in IMG/M
3300010154\|Ga0127503_10636638	Not Available	866	Open in IMG/M
3300010154\|Ga0127503_10956318	Not Available	1225	Open in IMG/M
3300011332\|Ga0126317_11032909	Not Available	1195	Open in IMG/M
3300012198\|Ga0137364_10637522	Not Available	803	Open in IMG/M
3300012212\|Ga0150985_101062576	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	2081	Open in IMG/M
3300012212\|Ga0150985_101135735	Not Available	1457	Open in IMG/M
3300012212\|Ga0150985_101473385	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	3443	Open in IMG/M
3300012212\|Ga0150985_103269083	Not Available	1148	Open in IMG/M
3300012212\|Ga0150985_103311638	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1817	Open in IMG/M
3300012212\|Ga0150985_104293599	Not Available	976	Open in IMG/M
3300012212\|Ga0150985_105725283	Not Available	699	Open in IMG/M
3300012212\|Ga0150985_105901377	Not Available	1280	Open in IMG/M
3300012212\|Ga0150985_109976705	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300012212\|Ga0150985_111056412	Not Available	838	Open in IMG/M
3300012212\|Ga0150985_111409901	Not Available	544	Open in IMG/M
3300012212\|Ga0150985_111425539	Not Available	733	Open in IMG/M
3300012212\|Ga0150985_111716967	All Organisms → cellular organisms → Bacteria	2895	Open in IMG/M
3300012212\|Ga0150985_112953537	Not Available	505	Open in IMG/M
3300012212\|Ga0150985_114683249	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1825	Open in IMG/M
3300012212\|Ga0150985_115378072	Not Available	1304	Open in IMG/M
3300012212\|Ga0150985_115832525	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1764	Open in IMG/M
3300012212\|Ga0150985_116332350	All Organisms → cellular organisms → Bacteria	2881	Open in IMG/M
3300012212\|Ga0150985_119319004	Not Available	1387	Open in IMG/M
3300012212\|Ga0150985_120274708	Not Available	823	Open in IMG/M
3300012212\|Ga0150985_120898364	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1767	Open in IMG/M
3300012469\|Ga0150984_100383506	Not Available	715	Open in IMG/M
3300012469\|Ga0150984_103287840	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	2543	Open in IMG/M
3300012469\|Ga0150984_103359437	Not Available	1397	Open in IMG/M
3300012469\|Ga0150984_104988834	All Organisms → Viruses → Predicted Viral	1109	Open in IMG/M
3300012469\|Ga0150984_105132670	Not Available	1478	Open in IMG/M
3300012469\|Ga0150984_105583870	Not Available	890	Open in IMG/M
3300012469\|Ga0150984_105957546	Not Available	1833	Open in IMG/M
3300012469\|Ga0150984_108886350	All Organisms → cellular organisms → Bacteria	2976	Open in IMG/M
3300012469\|Ga0150984_113753356	Not Available	658	Open in IMG/M
3300012469\|Ga0150984_113870165	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1634	Open in IMG/M
3300012469\|Ga0150984_116688967	Not Available	732	Open in IMG/M
3300012469\|Ga0150984_117486575	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1730	Open in IMG/M
3300012469\|Ga0150984_118722491	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1654	Open in IMG/M
3300012469\|Ga0150984_118800560	Not Available	630	Open in IMG/M
3300012469\|Ga0150984_121709092	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1944	Open in IMG/M
3300012960\|Ga0164301_11613786	Not Available	539	Open in IMG/M
3300012961\|Ga0164302_10636005	Not Available	780	Open in IMG/M
3300012961\|Ga0164302_10881654	Not Available	685	Open in IMG/M
3300012986\|Ga0164304_11164828	Not Available	621	Open in IMG/M
3300012989\|Ga0164305_10230766	Not Available	1324	Open in IMG/M
3300018429\|Ga0190272_10858745	Not Available	845	Open in IMG/M
3300019263\|Ga0184647_1123158	Not Available	531	Open in IMG/M
3300019269\|Ga0184644_1624242	Not Available	616	Open in IMG/M
3300019279\|Ga0184642_1139833	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1696	Open in IMG/M
3300022195\|Ga0222625_1319416	Not Available	1373	Open in IMG/M
3300026088\|Ga0207641_12363923	Not Available	531	Open in IMG/M
3300030829\|Ga0308203_1018405	Not Available	886	Open in IMG/M
3300030902\|Ga0308202_1012194	Not Available	1225	Open in IMG/M
3300030902\|Ga0308202_1020157	Not Available	1038	Open in IMG/M
3300030902\|Ga0308202_1034448	Not Available	869	Open in IMG/M
3300030902\|Ga0308202_1098177	Not Available	602	Open in IMG/M
3300030903\|Ga0308206_1060562	Not Available	774	Open in IMG/M
3300030903\|Ga0308206_1182394	Not Available	523	Open in IMG/M
3300030905\|Ga0308200_1004645	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1756	Open in IMG/M
3300030905\|Ga0308200_1005178	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1694	Open in IMG/M
3300030905\|Ga0308200_1098111	Not Available	620	Open in IMG/M
3300030993\|Ga0308190_1005068	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1685	Open in IMG/M
3300030993\|Ga0308190_1008379	Not Available	1445	Open in IMG/M
3300030993\|Ga0308190_1044479	Not Available	836	Open in IMG/M
3300031058\|Ga0308189_10006578	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2199	Open in IMG/M
3300031058\|Ga0308189_10008364	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2042	Open in IMG/M
3300031058\|Ga0308189_10011033	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1878	Open in IMG/M
3300031058\|Ga0308189_10012026	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1827	Open in IMG/M
3300031058\|Ga0308189_10019267	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1579	Open in IMG/M
3300031058\|Ga0308189_10033180	Not Available	1323	Open in IMG/M
3300031058\|Ga0308189_10225635	Not Available	694	Open in IMG/M
3300031058\|Ga0308189_10437133	Not Available	550	Open in IMG/M
3300031091\|Ga0308201_10027990	Not Available	1253	Open in IMG/M
3300031091\|Ga0308201_10059842	Not Available	986	Open in IMG/M
3300031092\|Ga0308204_10002285	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2575	Open in IMG/M
3300031092\|Ga0308204_10006504	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	1922	Open in IMG/M
3300031093\|Ga0308197_10005146	All Organisms → cellular organisms → Bacteria	2174	Open in IMG/M
3300031093\|Ga0308197_10049548	Not Available	1079	Open in IMG/M
3300031093\|Ga0308197_10227215	Not Available	650	Open in IMG/M
3300031094\|Ga0308199_1175161	Not Available	526	Open in IMG/M
3300031114\|Ga0308187_10090195	Not Available	932	Open in IMG/M
3300031114\|Ga0308187_10159018	Not Available	760	Open in IMG/M
3300031123\|Ga0308195_1074767	Not Available	531	Open in IMG/M
3300031834\|Ga0315290_10538276	Not Available	1018	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.73%
Host-Associated	Host-Associated	42.31%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.08%
Plants	Host-Associated → Plants	41.35%
Aquatic	Environmental → Aquatic	8.65%
Human	Host-Associated → Human	0.96%
Solid Waste	Engineered → Solid Waste	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.31%
Freshwater	Environmental → Aquatic → Freshwater	8.65%
Digestive System	Host-Associated → Human → Digestive System	0.96%
Grass	Engineered → Solid Waste → Grass	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	21.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.38%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Loam	Environmental → Terrestrial → Soil → Loam	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Lake	Environmental → Aquatic → Freshwater → Lake	0.96%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.96%
Composting	Engineered → Solid Waste → Grass → Composting	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	21.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.38%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.96%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	36.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	21.15%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	14.42%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908009	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003571	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_35 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRA_07386090	2124908009	Soil	MAELRRELVHDIQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAAT
2PV_04405270	2170459014	Switchgrass, Maize And Mischanthus Litter	GHTNCGEIAVESEDSVEAICKRMAELRRELICDMQEVSRSAKAMATPSFYIRKFPWATMAVAAGVGYLLIPKKKQVIHPDMKALAELVRKNQVQIKTSKAADESKGMVQSLAVMGITWAAKTGMNYLIHQLTTANSKAKEPTAAPSSPVDEPRR
INPhiseqgaiiFebDRAFT_1056457452	3300000364	Soil	VTPEDPAEKIRKRMSELRRELAYDVQDVSRSTKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAVKALAVMALSWAAKAGMNYLLQQMTTVAKAKAPREAPSSPVDEPSDVKR*
INPhiseqgaiiFebDRAFT_1056462373	3300000364	Soil	VRSVLPTDRATMRSCAVDPDEPVEKICRRMAELRRELAYDMQDVSRSAKAMATPSFYIRRFPWATLAVAAGVGYTLIPKKKQVVQPDMKALAELVRKNQVNINTSKSAETQGMVKSLAVMGLSWAAKAGMNYVIQQMTAASKAKSPHAAPSSPVDEPANAKR*
C688J35102_1185485341	3300002568	Soil	AVDAPLDCTAVTECTVDTDESVDQICRRMAELRRELVYDMQDVSRSAKAMASPSFYMRKFPWATLAVAAGVGYLLIPKKKHVVHPDMEALAELVRKNQVKINTAKASEESMLKTVALMALSWVAKAGTNYLVQQMTTRAAQAVKSPRAAPSSPVDEPTNVKR*
Ga0007419J51692_11129031	3300003571	Avena Fatua Rhizosphere	DESVDKICRRMAELRRELVYDMQDVSRSAKAMASPSFYMRKFPWATLAVAAGLGYLLIPKKKHVVQPDMEALAELVRKNQVKIDTAKASEESMMKTVGLMALSWAAKAGMNYFVQQMTTRAAQAGKSDGAAPSSPVDERTNVKR*
Ga0062593_1007418441	3300004114	Soil	VSADEPAENICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQIIKPDMEALAELVRKNQVNINAPKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPTDVTR*
Ga0063455_1001433561	3300004153	Soil	LDERRAVDAPLDCTAVTECTVDTDESVDQICRRMAELRRELVYDMQDVSRSAKAMASPSFYMRKFPWATLAVAAGVGYLLIPKKKHVVHPDMEALAELVRKNQVKINTAKASEESMLKTVALMALSWVAKAGTNYLVQQMTTRAAQAVKSPRAAPSSPVDEPTNVKR*
Ga0062590_1009485921	3300004157	Soil	VADESADKICERMAALRRELTHDVEDVTRSAKAMASPSFYLKKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELIRKNQMNINPAKTAEESQGMVKTLAVMGLTWAARAGMNYIIQQLTTVATKAAEPKPAPSSPVDEPTDVTG*
Ga0062590_1013144932	3300004157	Soil	SAAIGRSCDDRSYTVSADEPAENICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPTDVTRKYGCTN
Ga0062591_1016409811	3300004643	Soil	MAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAAAGYMLIPKKKQIIKPDMEALAELVRKNQVNINASKPAEESQGIVKTLAVMGLSWAAKAGMNYIVQQLTTAAT
Ga0058860_121921363	3300004801	Host-Associated	VDETWSLSVADEAADDICKRMAFLRRELTHDVEDVTRSAKAMASPSFYVRRFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELIRKNQLNINPAKAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTVAQKAAEPKPAPSSPVDEPTDVTDVTG*
Ga0070665_1024078421	3300005548	Switchgrass Rhizosphere	DMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELIRKNQMNINPAKAEETQGVVKTLAVMGLTWAAKAGMNYVIQQLTTVATKAAEPTPAPSSPVDEPTGVTDVTDVTG*
Ga0068866_112945821	3300005718	Miscanthus Rhizosphere	AIGRSCDDRSYTVSADEPAENICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPTDVTR*
Ga0068860_1014100722	3300005843	Switchgrass Rhizosphere	DDRSYTVSADEPAEKICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINSKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPTDVTR*
Ga0105245_126031541	3300009098	Miscanthus Rhizosphere	MAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATRAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINSKAAEESQGMVKTLAVMGLTWAAKAGMNYVVQQLTTAATKAAEPRPAPTSPV
Ga0105249_122416452	3300009553	Switchgrass Rhizosphere	MAELRRELTHDVEDVTRSAKAMASPSYYVKKFPWATLAVAAGVGYMLIPKKKHVIKPDMEALAELIRKNHGNINTMKAAEESQGMVKTLAVMGLTWAAKAGMNYIVGQITTAATKASAPRATEPNSTPSPAPSSPVDEPT
Ga0126311_114417212	3300010045	Serpentine Soil	AELRSELACDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYLLIPKKKQVVQPDMEALAELVRKNQVNINTTKASSQDSKGVLGSLAVMGLSWAARAGMNYVMQQMTTAATTKAKAAPKPAPSSPVDEPTDVKR*
Ga0126382_121659741	3300010047	Tropical Forest Soil	MANSDESAEEIRKRMAELRRELVCDVQDVTRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVIRPDMETLAELVRKNQVNINTSKAAEESQGMLQTLAVMGLSYAAKAGMNYLIQQLTTNAAKAQQ
Ga0126319_16313572	3300010147	Soil	KRMSELRRELVYDVQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYVLVPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAVKALAVMALTWAAKAGMNYLIQQMTTASKPKAPAAAPSSPVDEPTDVKR*
Ga0127503_106366382	3300010154	Soil	RNCRAVGRTGRSHENAEMNVDPDDEVEKIRKRMSELRRELAHDVQDVSRSAKAMASPSFYIRKFPWATLAVAAGLGYMLIPKKKKVVHPDMEALADLVRKNQVNINTSKAEESQGAVKALAVMALSWAAKAGMYYLLQQMTTASKPKAPRAAPSSPVDEPTDVKR*
Ga0127503_109563183	3300010154	Soil	MAELRRELIHDMQDVSRSAEAMTSPSYYIRKFPWATLALAAGVGYMLIPKKKQVVYPDMEALAELVRKNQVNFNASKATEESQGVVKTLAVMGLTWAAKAGMNYVIQQLTTAASKAMEPKETPSSPVDEPTDVTG*
Ga0126317_110329092	3300011332	Soil	VDETWSLSVADEAADDICKRMAFLRRELTHDVEDVTRSAKAMASPSFYVRKFPWATLAVAAGVGYMLIPKKKQVIKPDMEALAELIRKNQMNINPAKAEETQGVVKTLAVMGLTWAAKAGMNYVIQQLTTVATKAAEPTPAPSSPVDEPTGVTDVTDVTG*
Ga0137364_106375222	3300012198	Vadose Zone Soil	MAELRRELAYDMQDVSRSAKAMASPSFYVRKFPWATLAVAAGVGYLLIPKKKQVVQPDMKELADLVRKNQVNINTSKAAEESQGMVKTLAVMGLSWGAKAGMNYLIHQMTTPKAKAPHAAPSSPVDEPTDVKR*
Ga0150985_1010625763	3300012212	Avena Fatua Rhizosphere	MMTTEDPAETIRRRMAELRRELTHDVQDVTRSAKAMASPSFYVRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINSSKATEESQGMVKTLAVMGLSYAAKAGMNYIIQQLTTAAAKSGESKPAPSSPVDEPTDVTR*
Ga0150985_1011357353	3300012212	Avena Fatua Rhizosphere	MAELRRELAYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMEALAELVRKNQVNINTSKAAEESKGMMKSLAIMGLSWAAKAGMNYVVQQMTTASKATSAGAAPSSPVDEPTDVKR*
Ga0150985_1014733855	3300012212	Avena Fatua Rhizosphere	MKSLCDRLLMADRPPAESPVSPDEPAEKICKRMAELRRELVHDMQDVSRSAKAMASPSFYVRKFPWATLAIAAGVGYVLIPKKKHVIKPDMAELAELVRKNQININASKAAEEQQGMVKTLAMMGLTWAAKAGMNYVVQQMTTAATKAKESNPAPSSPVDEPTDVTG*
Ga0150985_1032690833	3300012212	Avena Fatua Rhizosphere	MAELRRELIHDVQDVTRSAKAMASPSFYMRKFPWATLAIAAGVGYMLIPKKKQVVHPDMEALAELVRKNQVQINTAKASEESQGMVKTLVVMGLTYAAKAGMNYVFQQLATAAKAEPKPAPSSPVDEPTDVTG*
Ga0150985_1033116384	3300012212	Avena Fatua Rhizosphere	MAELRRELVYDMQDVSRSAKAMASPAFYIRKFPWATMAVAAGVGYMLIPKKKQVLQPDMEALAEMVRKNQVNINTSKAAEDSRGMVKTLVVMGLSWAAKTGMNYLVQQMTTPAAKTRSSKAAPSSPVDEPTNVKR*
Ga0150985_1042935992	3300012212	Avena Fatua Rhizosphere	MAELRRELIHDVQDVTRSAKAMASPSFYVRKFPWATLAIAAGVGYMLIPKKKQVVHPDMEALAELVRKNQVHINTAKASEESQGIVKTLAVMGLTYAAKAGMNYVFQQLATAAKAEPKPAPSSPVDEPTDVTG*
Ga0150985_1057252831	3300012212	Avena Fatua Rhizosphere	MSYMISPEDPAEVIRRRMAELRRELTHDVQDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIQPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAAKKAAEPKPAPSSPVVDEPSDVTG*
Ga0150985_1059013774	3300012212	Avena Fatua Rhizosphere	LGCTAVTECTVDTDESVDKICRRMAELRRELVYDMQDVSRSAKAMASPSFYMRKFPWATLAVAAGLGYLLIPKKKHVVQPDMEALAELVRKNQVKIDTAKASEESMMKTVGLMALSWAAKAGMNYFVQQMTTRAAQAGKSDGAAPSSPVDERTNVKR*
Ga0150985_1099767051	3300012212	Avena Fatua Rhizosphere	DEPAEKICKRMAELRHELAYDVQDVSRSAKAMASPSFYIRKFPWATMAVAAGVGYMLIPKKKQVIQPDMNALAELVRKNQVNISTSKAATDSKGAMSSLVVMGLSWAAKAGMNYLMQQMTTASPKAKSPAPSSPVDEPTNVKR*
Ga0150985_1110564122	3300012212	Avena Fatua Rhizosphere	MVDSDDEVEKIRKRMSELRRELVYDVQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYALVPRKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAVKALAAMALSWGAKAGMNYLLQQMTTASKPKATRGAPSSPVDEPTDVKR*
Ga0150985_1114099011	3300012212	Avena Fatua Rhizosphere	MEFAVDTDESVEKICRRMAELRRELVYDMQDVSRSAKAMASPSFYMRKFPWATLAVAAGVGYLLIPKKKQVVHPDMKALAELVRKNQVKINTAKASEESMMKTVALMGLSWVAKAGTNYLVQQMTTRAARAKSPGAAPSSPVDEPTNVKR
Ga0150985_1114255391	3300012212	Avena Fatua Rhizosphere	MAELRRELAYDVQDVSRSAKAMASPSFYIRKFPWATIAVAAGVGYLVIPKKKQVIQPDMNTLAELVRKNQVNINTSKAATDSKGALGSLAVMALTWGAKAGMNYLMQQMTTASAKAKSPAPSSPVDEPTNVKR*
Ga0150985_1117169675	3300012212	Avena Fatua Rhizosphere	VDADESVEKICKRMAELRRELVYDMQDVSRSAKAIASPSFYIRKFPWATLAVAAGLGYMLVPKKKHVVQPDMEALAELVRKNQVKINTSKASDESMLKTAAVMGLSWAAKVGMNYLVQQMTTRAAQAGKSAGAAPSSPVDEPTNVKR*
Ga0150985_1129535371	3300012212	Avena Fatua Rhizosphere	RELTHDVEDVTRSAKAMASPSFYVRKFPWATLAVAAGVGYMLIPKKKQVIKPDMEALAELIRKNQMHINPAKAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTVATKAAESRPAPSSPVDEPTDVTG*
Ga0150985_1146832492	3300012212	Avena Fatua Rhizosphere	MAELRRELACDMQEVSRSAKAMASPSFFIRKFPWATMAVAAGVGYLLIPKKKQVIQPDMEALAELVRKNQVHINASKSAQESQGMFKTVAVMGLSWAARTGMKYLMQQLTTATPGAKEPKATATSPIDEPTNVKR*
Ga0150985_1153780723	3300012212	Avena Fatua Rhizosphere	MAELRRELVYDMQDVSRSAKAMASPAFYIRKFPWATMAVAAGVGYMLIPKKKQVLKPDMEALAELVRKNQVNINTSKAAEDSRGMVKTLLVMGLSWAAKTGMNYLVQQMTSPAAKTRSSKAAPSSPVDEPSDVKR*
Ga0150985_1158325253	3300012212	Avena Fatua Rhizosphere	MAQLRRELTHDVEDVARSAKAMASPSYYVRKFPWATLAVAAGMGYLLIPKKKQVIKPDMEALAELIRKNQVNVNTGKVAEESQGMVKTLAVMGLTWAAKAGMNYIIQQVTTAATNATEPKSKPSPTPSSPVDEPTDVQR*
Ga0150985_1163323503	3300012212	Avena Fatua Rhizosphere	MAELRRELAHDVQDVTRSAKAMASPSFYVRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVHINTAKASEESQGMVKTLAVMGLSWAAKAGMNYMIQQLTTAAAKSAGPKPAPSSPVDEPTDVTR*
Ga0150985_1193190041	3300012212	Avena Fatua Rhizosphere	LRGARSKTVSPEEPAEEICKRMAELRRELVHDMQEVSRSAKAMASPAFYVRKFPWATLAVAAGVGYMLIPKKKQQVMQPDMEALAELMRKNHVDVNASQAKDSPGMIKTLAAMGLTWAAKAGMNYVIQQATTAATKAMDPAQAPSSPVDEPTDVTG*
Ga0150985_1202747082	3300012212	Avena Fatua Rhizosphere	MKARLGCITITGCAVDADEPVEKICKRMAELRRELVYDMQDVSRSAKAMASPAFYIRKFPWATMAVAAGVGYMLIPKKKQVLQPDMEALAEMVRKNQVNINTSKAAEDSRGMVKTLVVMGLSWAAKTGMNYLVQQMTTPAAKTRSSKAAPSS
Ga0150985_1208983643	3300012212	Avena Fatua Rhizosphere	MSDMSNSEDTAETICRRMAELRRELTHDFQDVTRSAKAMASPSFYVRKFPWATLAIAAGVGYMFIPKKKQVIQPDMEALAELVRKNQVHINASKASEESQGMVKTLAVMGLSWAAKAGMNYVIQQLTTAATKAEKAKPAPSSPVDEPSDVTG*
Ga0150984_1003835062	3300012469	Avena Fatua Rhizosphere	MASLRRDLTHDVEDVARSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIQPDMAALAEMVRKNQVHINASKATEESQGVVKTLAVMGLSWAAKAGMNYVIQQLTTAAAKSAQPKPAPSSPVDEPTDVTR*
Ga0150984_1032878403	3300012469	Avena Fatua Rhizosphere	MAELRRELACDMQEVSRSAKAMASPSFFIRKFPWATMAVAAGVGYLLIPKKKQVIQPDMEALAELVRKNQVHINASKPAQESQGMFKTVAVMGLSWAARTGMKYLMQQLTTATPGAKEPKATATSPIDEPTNVKR*
Ga0150984_1033594373	3300012469	Avena Fatua Rhizosphere	MSYMISPEDPAEVIRRRMAELRRELTHDVQDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIQPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAAKKAAEPKPAPSSPVDEPSDVTG*
Ga0150984_1049888342	3300012469	Avena Fatua Rhizosphere	MAELRRELVYDMQDVSRSAKAMASPAFYIRKFPWATMAVAAGVGYMLIPKKKQVLQPDMEALAELVRKNQVNINTSKAAEDSRGMVKTLVVMGLSWAAKTGMNYLVQQMTSPAAKTRSSKAAPSSPVDEPTDVKR*
Ga0150984_1051326703	3300012469	Avena Fatua Rhizosphere	VDSDEPAEKICKRMAELRHELAYDVQDVSRSAKAMASPSFYIRKFPWATMAVAAGVGYMLIPKKKQVIQPDMNALAELVRKNQVNISTSKAATDSKGAMSSLVVMGLSWAAKAGMNYLMQQMTTASPKAKSPAPSSPVDEPTNVKR*
Ga0150984_1055838702	3300012469	Avena Fatua Rhizosphere	MKSLCDRLLMADRPPAESPVSPDEPAEKICKRMAELRRELVHDMQDVSRSAKAMASPSFYVRKFPWATLAIAAGVGYVLIPKKKHVIKPDMAELAELVRKNQININASKAAEEQQGMVKTLAMMGLTWAAKAGMNYVVQ
Ga0150984_1059575462	3300012469	Avena Fatua Rhizosphere	VDADESVEKICKRMAELRRELVYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGLGYMMVPKKKHVVQPDMEALAELVRKNQVKINTSKASDESMLKTAAVMGLSWAAKVGMNYLVQQMTTRAAQAGKSAGAAPSSPVDEPTNVKR*
Ga0150984_1088863503	3300012469	Avena Fatua Rhizosphere	MAELRRELSHDVAEVTRSAKAMASPSFYVRKFPWATLAIAAGVGYILIPKKKQVIKPDMEALAELVRKNQVHINASKAADESQGMVKTLAVMGLSWAAKAGMNYVVQQLTTAAAKAKEPKPAPSSPVDAPTDVAR*
Ga0150984_1137533561	3300012469	Avena Fatua Rhizosphere	HDVQDVARSAKAMASPSFYVRKFPWATLAVAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVHINASKATEESQGMVKSLAVMGLTWGAKAGMNYVLRQLTTAASKTAETKRAPSSPVDEPTDVTG*
Ga0150984_1138701651	3300012469	Avena Fatua Rhizosphere	MAELRRELTHDVEDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVVQPDMEALAELVRKNQVQINTSKAADESQGIVKTLAVMGLSWAAKAGMNYVIQQLTTASAKAAEPTPAPSSPVDEPTDVTG*
Ga0150984_1166889671	3300012469	Avena Fatua Rhizosphere	RRELICDMQEVSRSAKAMAKPSFYVRKFPWATMAVAAGVGYLLIPKKKQVIHPDMKALAELVRKNQVQIKTSKTAHESKGMMQSLAGMGITWAAKTGMNYVIQQLTTANSKAKEPTTAPSSPVDEPTKVRR*
Ga0150984_1174865753	3300012469	Avena Fatua Rhizosphere	MAELRRELVYDMQDVSRSAKAMASPSFYMRKFPWATLAVAAGLGYLLIPKKKHVVQPDMEALAELVRKNQVKIDTAKASEESMMKTVGLMALSWAAKAGMNYFVQQMTTRAAQAGKSDGAAPSSPVDERTNVKR*
Ga0150984_1187224912	3300012469	Avena Fatua Rhizosphere	VADETADEICKRMASLRRELTHDVEDVTRSAKAMASPSFYVRKFPWATLAVAAGVGYMLIPKKKQVIKPDMEALAELIRKNQMHINPAKAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTVATKAAESRPAPSSPVDEPTDVTG*
Ga0150984_1188005601	3300012469	Avena Fatua Rhizosphere	MADRPPAESPVSPDEPAEKICKRMAELRRELVHDVQDVTRSAKAMASPSFYVRKFPWATLAIAAGVGYMLIPKKKHVIKPDMAELAELVRKNQINIDASKAAEEQPGMVKTLAMMGLTWAAKAGMNYVVQQMTTAATKAKESNRAPSSPVDEPTDVTG*
Ga0150984_1217090923	3300012469	Avena Fatua Rhizosphere	MAELRRELAYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKHVVQPDMEALAELVRKNQVNINTSKAAEESKGMIKSLAIMGLSWAAKAGMNYVVQQMTTASKATSAGAAPSSPVDEPTDVKR*
Ga0164301_116137861	3300012960	Soil	DVQDVSRSAKAMASPSFYIRKFPWATLTVAAGVGYMLIPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAVKALAVMALSWAAKAGMNYLLQQMTTASKPKAPRTAPSSPVDEPSDVKR*
Ga0164302_106360052	3300012961	Soil	VDTDEPAEKICMRMAELRRELVYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAAKALAVMALSWAAKAGMNYLLQQMTTASKPKAPRAAPSSPVDEPTDVKR*
Ga0164302_108816542	3300012961	Soil	MAELRRELVHDMPDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAAAKAAEPKPAPSSPVDEPTDVTR*
Ga0164304_111648281	3300012986	Soil	EENENVVRSAAIGRSCDDRSYTVSADEPAEKICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPTDVTR*
Ga0164305_102307661	3300012989	Soil	ICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPTDVTR*
Ga0190272_108587451	3300018429	Soil	RMAELRRELIHDVQDVTRSAKAMASPSFYIRKFPWATLAIAAGLGYMLIPKKKQIIKPDMEALAELVRKNQVHINASKATEESPGMVKTLAVMGLTWAARAGMNYVVQQLTTAASKAAEQKQAPSSPVDEPSDVTG
Ga0184647_11231581	3300019263	Groundwater Sediment	AELRRELTHDVQDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVHINAAKATEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAAAKAVEPKPAPSSPVDEPTDVTR
Ga0184644_16242421	3300019269	Groundwater Sediment	VTEESAEDICKRMAFLRRELTHDVEDVTRSAKAMASPSFYVRKFPWATLAIAAGVGYMLTPKKKQVIKPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGMNYVIQQVTMAATKPAELKPAPSSPVDEPTDVTG
Ga0184642_11398333	3300019279	Groundwater Sediment	VDPDEPVEKICRRMAELRRELAYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMDALAELVRKNQVNINTSKAAQESQGMVKTLAVMGLSWAAKAGMNYAIQQMTTAAAKPASKAAPSSPVDEPANVKR
Ga0222625_13194163	3300022195	Groundwater Sediment	VDTDEPAEKICMRMAELRRELVYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMEALAELVRKNQVNINTTKAAEPSQGMMASLAVMGLSWAAKAGLNYVVQQMTTAASKKKNPNAAPSSPVDEPTDVKR
Ga0207641_123639232	3300026088	Switchgrass Rhizosphere	MAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINSKAAEESQGMVKTLAVMGLTWAAKAGMNYVVQQLTTAATKAAEPRPAPTSPVDEPTDVTR
Ga0308203_10184053	3300030829	Soil	VDPDEPVERICRRMAELRRELAYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMKALAELVRKNQVNISTTKAAETQGMVKSLAVMGLTWAAKAGMNYVVQQMTTAASAAKSPNAAPSSPVDEPANVKR
Ga0308202_10121941	3300030902	Soil	VSPEDPAETITRRMAELRRELTLDVEDVTRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKRQVIQPDMEALAELVRKNQVQINTSQATEESQGMVKTLAVMGLSWAAKAGMHYVVQQLTSAAAKSPEPKPAPSSPVDEPSDVTG
Ga0308202_10201572	3300030902	Soil	MAELRRELAYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMKALAELVRKNQVNISTTKAAETQGMVKSLAVMGLTWAVKAGMNYVVQQMTTAASAAKSPNAAPSSPVDEPANVKR
Ga0308202_10344482	3300030902	Soil	MSYMISPEDPAEVIRRRMAELRSELTHDVQDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIQPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPSDVTG
Ga0308202_10981772	3300030902	Soil	VDTDEPAEKICMRMAELRRELVYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMEALAELVRKNQVNINTTKAAEPSQGMMASLAVMGLSWAAKAGLNYVVQQMTTAASKKKNPNAAPSSPV
Ga0308206_10605622	3300030903	Soil	MSYMISPEEPAEAIRRRMAELRRELTHDVEDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGVNYVIQQLTTAAAKAAEPKPAPSSPVDEPTDVTR
Ga0308206_11823941	3300030903	Soil	RMAELRRELVYDMQDVSRSAKAMTSPAFYIRKFPWATLLVAAGLGYLLIPKKKQVVQPDMKALAELVRKNQVKINTSKASEESMMKTAGVMALSWAAKAGMNYLVQQMTARAAQATSPGRAPSSPVDEPTNVKR
Ga0308200_10046453	3300030905	Soil	VSPEDPAETITRRMAELRRELTHDVEDVTRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKRQVIQPDMEALAELVRKNQVQINTSKATEESQGMVKTLAVMGLSWAAKAGMNYVVQQLTSAAAKSPEPKPAPSSPVDEPSDVTG
Ga0308200_10051782	3300030905	Soil	VDSDDEVEKIRKRMSELRRELVYDVQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYALVPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAVKALAVMALSWAAKAGMNYLLQQMTTASKPKAPKAAPSSPVDEPTDVKR
Ga0308200_10981111	3300030905	Soil	VSADEPAEKICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVNINASKAAEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKA
Ga0308190_10050682	3300030993	Soil	MAELRRELVYDMQEVSRSAKAMASPSFYIRKFPWATLLVAAGLGYVLIPKKKQVVHPDMDALAELVRKNQVKINTSKASEESMMKTVAVMGLSWAAKAGMNYLVQQMTTRAAQAKSPGRAPSSPVDEPTNVKR
Ga0308190_10083793	3300030993	Soil	VSPEDPAETITRRMAELRRELTHDVEDVTRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKRQVIQPDMEALAELVRKNQVQINTSQATEESQGMVKTLAVMGLSWAAKAGMNYVVQQLTSAAAKSPEPKPAPSSPVDEPSDVTG
Ga0308190_10444792	3300030993	Soil	VVDAPLDCTTVTECTVDADESVDKICRRMAELRRELVFDMQDVSRSTKAMTSPSFYIRKFPWATLAVAAGLGYLLIPKKKQFVQPDMKALAELVRKNQVKINTSKASEESMMKTLAVMGLSWVAKAGTNYLVQQMTTRAARAKSPGAAPSSPVDEPTSVKR
Ga0308189_100065784	3300031058	Soil	VVDAPLDCTTVTECTVDADESVDKICRRMAELRRELVFDMQDVSRSTKAMTSPSFYMRKFPWATLAVVAGLGYLLIPKKKQFVQPDMKALAELVRKNQVKINTSKASEESMMKTLAVMGLSWVSKAGTNYLVQQMTTRAARAKSPGAAPSSPVDEPTSVKR
Ga0308189_100083642	3300031058	Soil	VSPEDPAETITRRMAELRRELTHDVEDVTRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVIQPDMAALAELVRKNQVQINTSQATEESQGMVKTLAVMGLSWAAKAGMNYVVQQLTSAAAKSPEPKPAPSSPVDEPSDVTG
Ga0308189_100110333	3300031058	Soil	MVDSDDEVEKIRKRMSELRRELAYDVQDVSRSAKAMASPSFYIRKFPWATLAVAAGMGYMLIPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAMKALAMMAMSWGAKAGMNYLLQQMTTASKPKAPASAPSSPVDEPTDVKR
Ga0308189_100120263	3300031058	Soil	VDTDESVDKICKRMAELRRELVYDMQDVSRSAKAMTSPAFYIRKFPWATLLVAAGLGYLLIPKKKQVVQPDMKALAELVRKNQVKINTSKASEESMMKTAGVMALSWAAKAGMNYLVQQMTARAAQATSPGRAPSSPVDEPTNVKR
Ga0308189_100192671	3300031058	Soil	MSSEDPAEMICRRMAELRSELTHDVQDVTRSAKAMTSPLFYVRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGMNYVLQQLTTAATKAAEPSPSPSSPVDEPTDVTG
Ga0308189_100331801	3300031058	Soil	MEYYRLLLEKRRAVGARLDRAAATECTVDTDESVDKICKRMAELRRELVYDMQEVSRSAKAMASPSFYIRKFPWATLLVAAGLGYVLIPKKKQVVHPDMDALAELVRKNQVKINTSKASEESMMKTVAVMGLSWAAKAGMNYLVQQMTTRAAQAKSPGRAPSSPVDEPTNVKR
Ga0308189_102256351	3300031058	Soil	MWSCTVTPEDPAEKIRKRMSELRRELAYDVQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYILVPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAVKALAVMALSWAAKAGMNYLLQQMTTVAKAKAPRKAPSSPVDEPTDVKR
Ga0308189_104371331	3300031058	Soil	MSYMISPEDPAEVIRRRMAELRRELTHDVQDVTRSAKAMTSPSFYIRKFPWATLAIATGVGYMLIPKKKQVIQPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAAVK
Ga0308201_100279902	3300031091	Soil	VVDAPLDCTTVTECTVDADESVDKICRRMAELRRELVFDMQDVSRSTKAMTSPSFYMRKFPWATLAVAAGLGYLLIPKKKQFVQPDMKALAELVRKNQVKINTSKASEESMMKTLAVMGLSWVAKAGTNYLVQQMTTRAAQAKSPGAAPSSPVDEPTNVKR
Ga0308201_100598421	3300031091	Soil	MSYMISPEDPAEVIRRRMAELRRELTHDVQDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIQPDMEALAELVRKNQVHINASKATEESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTAATKAAEPKPAPSSPVDEPSDVTG
Ga0308204_100022854	3300031092	Soil	MVTECTVDTDESVDKICKRMAELRRELVYDMQDVSRSAKAMTSPAFYIRKFPWATLLVAAGLGYLLIPKKKQVVQPDMKALAELVRKNQVKINTSKASEESMMKTAGVMALSWAAKAGMNYLVQQMTARAAQATSPGRAPSSPVDEPTNVKR
Ga0308204_100065042	3300031092	Soil	VDTDEPAEKICKRMAELRRELAFDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYKLIPKKKQVVQPDMEALAKLVRKNQVNINTSKAAEQSQGMIASLAVMGLSWAAKAGLNYVVQQMTTAASKKKNPNAAPSSPVEPTDVKR
Ga0308197_100051463	3300031093	Soil	VDPDEPVEKICRRMAELRRELAYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMDALAELVRKNQVNINTSKAAQESQGMVKTLAVMGLSWAAKAGMNYAIQQMTTAAAKPASKAAPSSPVDEPSNVKR
Ga0308197_100495482	3300031093	Soil	VSADEPAEKICRRMAELRRELVHDMQDVSRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQVQINTSQATEESQGMVKTLAVMGLSWAAKAGMNYVVQQLTSAAAKSPEPKPAPSSPVDEPSDVTG
Ga0308197_102272151	3300031093	Soil	MAFLRRELTHDVEDVTRSAKAMASPSFYVRKFPWATLAIAAGVGYMLIPKKKQVIKPDMEALAELVRKNQININAAKAADESQGMVKTLAVMGLTWAAKAGMNYVIQQLTTVATKAAEPK
Ga0308199_11751612	3300031094	Soil	CTVTPEDPAEKIRKRMSELRRELAYDVQDVSRSAKAMASASFYIRKFPWATLAVAAGVGYMLVPKKKKVVHPDMEALAELVRKNQVNINTSKAEESQGAVKALAVMALSWAAKAGMNYLLQQMTTVSKPKAPRAAPSSPVDEPTDVKR
Ga0308187_100901952	3300031114	Soil	VDTDEPAEKICMRMAELRRELVYDMQDVSRSAKAMASPSFYIRKFPWATLAVAAGVGYMLIPKKKQVVQPDMEALAKLVRKNQVNINTSKAAEQSQGMIASLAVMGLSWAAKAGLNYVVQQMTTAASKKKNPNAAPSSPVDEPTDVKR
Ga0308187_101590183	3300031114	Soil	ELRREIVYDMQDVSRSAKAMTSPAIYIRKFPWATLLDAAGLGYLLIPKKKQVVQPDMKALAELVRKNQVKINTSKASEESMMKTAGVMALSWAAKAGMNYLVQQMTARAAQSTSPGRAPSSPVDEPTNVKR
Ga0308195_10747671	3300031123	Soil	RRRMAELRRELTHDVQDVTRSAKAMASPSFYIRKFPWATLAIAAGVGYMLIPKKKQVIQPDMEALAELVRKNQVHINAAKATEESQGMVKTLAVMGLTWAAKAGMNYVVQQLTTAATKAAEPKPAPSSPVDEPSDVTG
Ga0315290_105382763	3300031834	Sediment	MTSPSYYVRKFPWATLAVAAGVGYMLIPKKKQSVTPDMQALAELIKNNHGRGTAQQAAQESPGMVKTLAVMGLSWAARAGMNYLLQQLTTVATKATAPQPNEQSPSPAKESSNVER

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098306

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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