Metagenome Family F098249

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098249
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	67 residues
Representative Sequence	FGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK
Number of Associated Samples	90
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	93.27 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (20.192 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.51% β-sheet: 0.00% Coil/Unstructured: 41.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF16258	DUF4912	18.27
PF01467	CTP_transf_like	10.58
PF07479	NAD_Gly3P_dh_C	2.88
PF13906	AA_permease_C	1.92
PF00551	Formyl_trans_N	0.96
PF13520	AA_permease_2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	66.35 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	66.35 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	55.77 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	5.77 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	55.77 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	5.77 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	55.77 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	5.77 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	55.77 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	5.77 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	55.77 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5.77 %
Unclassified	root	N/A	2.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17145107	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1299	Open in IMG/M
2162886007\|SwRhRL2b_contig_622337	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
2170459016\|G1P06HT02H67SH	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
2189573001\|GZR05M102HBKNA	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
2189573004\|GZGWRS401ETKZ8	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300000550\|F24TB_10871273	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300000559\|F14TC_100839826	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1042474	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1071138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300000787\|JGI11643J11755_11720985	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300000953\|JGI11615J12901_10029531	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300000955\|JGI1027J12803_101292425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2260	Open in IMG/M
3300000955\|JGI1027J12803_102588979	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300001139\|JGI10220J13317_10681227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1760	Open in IMG/M
3300001431\|F14TB_101551903	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300001867\|JGI12627J18819_10108316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1145	Open in IMG/M
3300002126\|JGI24035J26624_1043048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300004114\|Ga0062593_102232409	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300004156\|Ga0062589_102541354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300004157\|Ga0062590_101623361	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300004479\|Ga0062595_102566539	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300004643\|Ga0062591_101481039	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300005093\|Ga0062594_102011317	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	618	Open in IMG/M
3300005093\|Ga0062594_102523731	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300005179\|Ga0066684_10360442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	973	Open in IMG/M
3300005293\|Ga0065715_10276834	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300005330\|Ga0070690_101239581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300005332\|Ga0066388_100806924	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1530	Open in IMG/M
3300005332\|Ga0066388_103881028	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	763	Open in IMG/M
3300005337\|Ga0070682_101407315	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300005445\|Ga0070708_100176894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1994	Open in IMG/M
3300005451\|Ga0066681_10116016	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300005451\|Ga0066681_10649109	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300005455\|Ga0070663_100833854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	792	Open in IMG/M
3300005566\|Ga0066693_10116858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	976	Open in IMG/M
3300005576\|Ga0066708_10739260	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300005615\|Ga0070702_101197217	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300005713\|Ga0066905_101030915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	727	Open in IMG/M
3300005764\|Ga0066903_100206523	All Organisms → cellular organisms → Bacteria	2950	Open in IMG/M
3300005764\|Ga0066903_100494916	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
3300005764\|Ga0066903_106140752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	628	Open in IMG/M
3300005834\|Ga0068851_10214059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1080	Open in IMG/M
3300005937\|Ga0081455_10713758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	637	Open in IMG/M
3300006046\|Ga0066652_100672381	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	983	Open in IMG/M
3300006046\|Ga0066652_100686116	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300006049\|Ga0075417_10602370	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300006844\|Ga0075428_100738071	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300006852\|Ga0075433_11124368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	683	Open in IMG/M
3300009038\|Ga0099829_10347810	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1220	Open in IMG/M
3300009094\|Ga0111539_13510524	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300009100\|Ga0075418_11580631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300009792\|Ga0126374_10162980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1367	Open in IMG/M
3300009792\|Ga0126374_10377904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	982	Open in IMG/M
3300010043\|Ga0126380_11534164	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300010321\|Ga0134067_10220075	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300010333\|Ga0134080_10062009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1487	Open in IMG/M
3300010333\|Ga0134080_10171769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	928	Open in IMG/M
3300010335\|Ga0134063_10705427	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300010358\|Ga0126370_10709362	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300010361\|Ga0126378_10428191	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1437	Open in IMG/M
3300010362\|Ga0126377_10761929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1024	Open in IMG/M
3300010366\|Ga0126379_11935706	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300010366\|Ga0126379_12369099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	631	Open in IMG/M
3300010376\|Ga0126381_100330533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2100	Open in IMG/M
3300010398\|Ga0126383_12017285	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300011444\|Ga0137463_1071844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1297	Open in IMG/M
3300012199\|Ga0137383_11208034	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300012203\|Ga0137399_11727434	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012205\|Ga0137362_10978105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300012507\|Ga0157342_1078452	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300012532\|Ga0137373_10900610	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649	Open in IMG/M
3300012897\|Ga0157285_10043924	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300012948\|Ga0126375_10068528	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1978	Open in IMG/M
3300012972\|Ga0134077_10541620	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300015264\|Ga0137403_10350467	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1363	Open in IMG/M
3300015372\|Ga0132256_101242408	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	858	Open in IMG/M
3300016319\|Ga0182033_11813915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300016319\|Ga0182033_12119885	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300017659\|Ga0134083_10058266	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300018066\|Ga0184617_1163230	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	658	Open in IMG/M
3300018482\|Ga0066669_11505657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300019881\|Ga0193707_1036049	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1608	Open in IMG/M
3300020004\|Ga0193755_1003984	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4713	Open in IMG/M
3300020010\|Ga0193749_1008519	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1988	Open in IMG/M
3300020015\|Ga0193734_1000220	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	8807	Open in IMG/M
3300021344\|Ga0193719_10165367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	951	Open in IMG/M
3300025290\|Ga0207673_1018272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	939	Open in IMG/M
3300025926\|Ga0207659_10818521	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	800	Open in IMG/M
3300026322\|Ga0209687_1154865	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300026523\|Ga0209808_1188460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	711	Open in IMG/M
3300026529\|Ga0209806_1239274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300026537\|Ga0209157_1068487	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1790	Open in IMG/M
3300026548\|Ga0209161_10045293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2916	Open in IMG/M
3300027502\|Ga0209622_1079961	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300028717\|Ga0307298_10107328	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300031231\|Ga0170824_104720708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1026	Open in IMG/M
3300031231\|Ga0170824_110444631	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300031231\|Ga0170824_115169659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	695	Open in IMG/M
3300031947\|Ga0310909_10714232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	832	Open in IMG/M
3300032261\|Ga0306920_104215523	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300033412\|Ga0310810_11121784	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	651	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.62%
Host-Associated	Host-Associated	14.42%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.69%
Plants	Host-Associated → Plants	14.42%
Aquatic	Environmental → Aquatic	1.92%
Solid Waste	Engineered → Solid Waste	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.73%
Sediment	Environmental → Aquatic → Sediment	1.92%
Grass	Engineered → Solid Waste → Grass	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.27%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002126	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00363650	2088090014	Soil	VIWIVFGSLGSILWLARYHTEYIPGPLGIVIGLAGFVLAWSLGVLLNLXXXXXXXXXXRHLMMESPTSVEK
GPIPI_03868590	2088090014	Soil	GWSRALKVAGVIWIVFGSLGSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSDVDK
SwRhRL2b_0736.00006130	2162886007	Switchgrass Rhizosphere	ALKIAGVIWIVFGSLGSILWLARYRMEYIPGPLGIVIGTAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTGREK
2ZMR_00662640	2170459016	Switchgrass, Maize And Mischanthus Litter	ILWLARYHTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADAEK
FD2_01147490	2189573001	Grass Soil	LATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGAEK
FG2_04594450	2189573004	Grass Soil	RALKIAGVIWIVFGSLGSILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHAHHLMMESLSGAEK
F24TB_108712732	3300000550	Soil	LGSILWLARYRTDYIPGPLAIVIGAAGFVLAWSLGXXXXXXXXXXXXXXXXHLMMETPGDSAK*
F14TC_1008398262	3300000559	Soil	SILWLARYRMEYIPGPLGIVIGTAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTGREK*
AP72_2010_repI_A01DRAFT_10424742	3300000579	Forest Soil	LGSILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPATAEK*
AF_2010_repII_A01DRAFT_10711381	3300000580	Forest Soil	SILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLTAQLSDHTHARHLMMESPASAEN*
JGI11643J11755_117209852	3300000787	Soil	LGSILWLARYRTEYIPGALGIVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPSDN*
JGI11615J12901_100295311	3300000953	Soil	SILWLARYRMEYIPGPIGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTGREK*
JGI1027J12803_1012924251	3300000955	Soil	WIVFGSLGSILWLARYRMDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEK*
JGI1027J12803_1025889792	3300000955	Soil	WIVFGSLGSILWLARYRLEYIPGPLGIVIGLGAFVLAWSLGALLNLVAQVSDHTHARHLMMETPGQAEK*
JGI10220J13317_106812273	3300001139	Soil	LGSILWLARYRTDYIPGPLGLVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPNDN*
F14TB_1015519031	3300001431	Soil	SLGSILWLARYRTDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMEIPGESAK*
JGI12627J18819_101083161	3300001867	Forest Soil	IWIVFGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADPGK*
JGI24035J26624_10430481	3300002126	Corn, Switchgrass And Miscanthus Rhizosphere	VFGSLGSMLWMVRYRTEYIPGALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0062593_1022324092	3300004114	Soil	GSILWLARYRMEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTGREK*
Ga0062589_1025413542	3300004156	Soil	IWIVFGSLGSILWLARYHMEYIPGPLGIVIGLAGFVFSWSLGALLNLVAQVSDHTHARHLMMESPADAGK*
Ga0062590_1016233611	3300004157	Soil	LKIAGVIWIVFGSLGSILWLARYRMEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTGREK*
Ga0062595_1025665392	3300004479	Soil	ILWLARYHTEYIPGPLGIVIGLAGFVFSWSLGALLNLVAQVSDHTHARHLMMESPADAGK
Ga0062591_1014810391	3300004643	Soil	LGSILWLARYRMEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTGREK*
Ga0062594_1020113172	3300005093	Soil	MLWMVRYRTEYIPGALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK
Ga0062594_1025237312	3300005093	Soil	VIWIVFGSLGSILWLARYHVDYIPGALGIVIGLAGFVLSLSLGALLNLVAQVSDHTHARHLGMESPASTD*
Ga0066684_103604421	3300005179	Soil	ILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGDLEK
Ga0066675_107828951	3300005187	Soil	WSRALKIAGVIWIVFGSLGSILWLARYRMDYIPGPLGIVIGAAGFVFAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0065715_102768342	3300005293	Miscanthus Rhizosphere	SILWLARYRMEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESGK*
Ga0070690_1012395812	3300005330	Switchgrass Rhizosphere	GSLGSILWLARYRMEYIPGALGIVIGGAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES*
Ga0066388_1008069241	3300005332	Tropical Forest Soil	WLARYGADYVPGPLGIIIGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTNPEK*
Ga0066388_1038810281	3300005332	Tropical Forest Soil	WIVFGSLGSILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGAEK*
Ga0070682_1014073152	3300005337	Corn Rhizosphere	SLGSMLWMVRYRTEYIPGALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0070708_1001768944	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ILWLARYRIEYIPGPLGVVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTKATSDL*
Ga0066681_101160161	3300005451	Soil	WSRALKIAGVIWLVFGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNVEK*
Ga0066681_106491091	3300005451	Soil	AGVIWIVFGSLGSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGNLEK*
Ga0066687_106342761	3300005454	Soil	WSRALKIAGVIWIVFGSLGSILWLARYRLDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESTE*
Ga0070663_1008338541	3300005455	Corn Rhizosphere	FGSLGSILWLARYHVDYIPGALGIVIGLAGFVLSLSLGALLNLVAQVSDHTHARHLGMESPASTD*
Ga0066693_101168581	3300005566	Soil	GSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGDLEK*
Ga0066708_107392601	3300005576	Soil	VFGSLGSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGDLEK*
Ga0070702_1011972172	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	SMLWMVRYRTEYIPGALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0066905_1010309151	3300005713	Tropical Forest Soil	IWIVFGSLGSILWVARYHVEYIPGPLGMVIGLAGFVLSWSLGALLNLVAQVSDHTHARHLMMESPAGAEK*
Ga0066903_1002065235	3300005764	Tropical Forest Soil	GSILWLARYRVEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASMEK*
Ga0066903_1004949164	3300005764	Tropical Forest Soil	WIVFGSLGSILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGTDK*
Ga0066903_1061407521	3300005764	Tropical Forest Soil	LWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTSAAK*
Ga0068851_102140592	3300005834	Corn Rhizosphere	MLWMVRYRTEYIPGALGIVIGLAGFVLAWSLGVLLKLVAQVSTHTRARHLMMESPSAAEK
Ga0081455_107137582	3300005937	Tabebuia Heterophylla Rhizosphere	WMARYHTEQIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0066652_1006723812	3300006046	Soil	SILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGNLEK*
Ga0066652_1006861161	3300006046	Soil	VIWLVFGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK*
Ga0075417_106023702	3300006049	Populus Rhizosphere	SILWLARYHTEQIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGHSAK*
Ga0075428_1007380712	3300006844	Populus Rhizosphere	WSRALKIAGVIWIVFGSLGSILWLARYHTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADAEK*
Ga0075433_111243682	3300006852	Populus Rhizosphere	RALKVAGVIWIVFGSLGSILWLARYHTEYIPGPLGIVIGLAGFVFSWSLGALLNLVAQVSDHTHARHLMMESPADAGK*
Ga0099829_103478102	3300009038	Vadose Zone Soil	SRALKIAGVIWIVFGSLGSILWLARYRTEYIPGPLGIVVGLAGFVFAWCLGALLNRVAQVSDHTHARHLMIESPTNAEK*
Ga0111539_135105242	3300009094	Populus Rhizosphere	VIWIVFGSLGSILWLARYRTEYIPGALGIVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPSEN*
Ga0075418_115806312	3300009100	Populus Rhizosphere	WLARYHTEYIPGPLGIVIGLAGFVFSWSLGALLNLVAQVSDHTHARHLMMESPADAGK*
Ga0126374_101629801	3300009792	Tropical Forest Soil	IWIVFGSLGSILWLARYHGDFIPGPLGIVIGLAGFVLSWSLGALLNLVAQVSDHTHARHLMMESPASAAK*
Ga0126374_103779042	3300009792	Tropical Forest Soil	GSLGSILWLATYRTEYIPGPLGFLIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPATAEK*
Ga0126380_115341642	3300010043	Tropical Forest Soil	KIAGVIWIVFGSLGSILWLARYRVEYIPGAMGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESGN*
Ga0134067_102200751	3300010321	Grasslands Soil	WLARYRLDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0134080_100620092	3300010333	Grasslands Soil	WIVFGSLGSILWLARYRGDYIPGPLGIVIGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMEAPSKPEK*
Ga0134080_101717692	3300010333	Grasslands Soil	SILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK*
Ga0134063_107054271	3300010335	Grasslands Soil	KIAGVIWIVFGSLGSILWLARYRGDYIPGPLGIVIGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0126370_107093622	3300010358	Tropical Forest Soil	LKIAGVIWIVFGSLGSILWLARYGADYVPGPLGIIIGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTNPEK*
Ga0126378_104281911	3300010361	Tropical Forest Soil	GSVLWLARYRTDYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASAEK*
Ga0126377_107619292	3300010362	Tropical Forest Soil	AGVIWIVFGSLGSILWLARYHADFIPGPLGIVIGLAGFVLSWSLGALLNLVAQVSDHTHARHLMMESPISAAK*
Ga0126379_119357062	3300010366	Tropical Forest Soil	VIWIVFGSLGSILWLARYHTGYIPGPLGIVIGLAGFVLAWSLGALLNLTAQLSDHTHARHLMMESPASAEN*
Ga0126379_123690992	3300010366	Tropical Forest Soil	VIWIVFGSLGSILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPATAEK*
Ga0126381_1003305334	3300010376	Tropical Forest Soil	SLGSILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGTDK*
Ga0126383_120172851	3300010398	Tropical Forest Soil	VIWIVFGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLTAQLSGHTHARHLMMESPASAEN*
Ga0137463_10718442	3300011444	Soil	GSLGSILWLARYRTEYIPGPLGIVVGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNAEK*
Ga0137383_112080341	3300012199	Vadose Zone Soil	ILWLARYRTEYIPGPLGIVVGLAGFVLAWSLGALLNLVAQVSDHTHARHLMIESPTNAEK
Ga0137399_117274341	3300012203	Vadose Zone Soil	SILWLARYRMEYIPGALGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES*
Ga0137362_109781051	3300012205	Vadose Zone Soil	ALKIAGVIWIVFGSLGSILWLARYRMEYIPGPLGIVIGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTKATSDL*
Ga0157342_10784522	3300012507	Arabidopsis Rhizosphere	WLARYRTEYIPGALGIVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPSEN*
Ga0137373_109006101	3300012532	Vadose Zone Soil	SLGSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGSVEK*
Ga0157285_100439241	3300012897	Soil	IWIVFGSLGSILWLARYRMDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESEK*
Ga0126375_100685284	3300012948	Tropical Forest Soil	IWIVFGSLGSILWLARYRVEYIPGPLGIVIGLGGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASMEK*
Ga0134077_105416201	3300012972	Grasslands Soil	GVIWIVFGSLGSILWLARYRTEYIPGPLGIVVGLAGFVLAWSLGALLNLVAQVSDHTHARHLMIESPTNAEK*
Ga0137403_103504673	3300015264	Vadose Zone Soil	VFGSLGSILWLARYRTDYIPGPLGIVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPSEN*
Ga0132256_1012424082	3300015372	Arabidopsis Rhizosphere	VFGSLGSILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHAHHLMMESPSGTDK*
Ga0182033_118139151	3300016319	Soil	IVFGSLGSILWLARYHEDYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLTMETPATPEK
Ga0182033_121198851	3300016319	Soil	KIAGVIWIVFGSLGSILWLARYHTEYIPGPLGIVIGLAGFVLSWSLGALLNLVAEVSDHTHARHLMMESPTTAEK
Ga0134083_100582662	3300017659	Grasslands Soil	VIWIVFGSLGSILWLARYRMEYIPGALGIVIGAAGFVLAWSLGALLNLVAQVSNHTHAQHLMMETSATPQK
Ga0184617_11632301	3300018066	Groundwater Sediment	VAGVIWIVFGSLGSILWLARYRTEYIPGALGIVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEN
Ga0066669_115056572	3300018482	Grasslands Soil	GSLGSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGDLEK
Ga0193707_10360493	3300019881	Soil	GVIWIVFGSLGSILWLARYRTDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0193755_10039841	3300020004	Soil	SILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADAE
Ga0193749_10085191	3300020010	Soil	GSILWLARYRMDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEK
Ga0193734_10002207	3300020015	Soil	VIWIVFGSLGSILWLARYRVDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0193719_101653672	3300021344	Soil	WLVFGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK
Ga0207673_10182721	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	LWMVRYRTEYIPGALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK
Ga0207659_108185211	3300025926	Miscanthus Rhizosphere	WLARYHVDYIPGALGIVIGLAGFVLSLSLGALLNLVAQVSDHTHARHLGMESPASTD
Ga0209687_11548652	3300026322	Soil	FGSLGSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASAEK
Ga0209808_11884601	3300026523	Soil	IAGVIWIVFGSLGSILWLARYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGDLEK
Ga0209806_12392741	3300026529	Soil	WSRALKIAGVIWIVFGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASAEK
Ga0209157_10684873	3300026537	Soil	SLGSILWLARYRVEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMEAPSKPEK
Ga0209161_100452935	3300026548	Soil	AGVIWLVFGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNVEK
Ga0209622_10799611	3300027502	Forest Soil	LGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADPGK
Ga0307298_101073281	3300028717	Soil	GSILWLARYRTDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPREN
Ga0170824_1047207082	3300031231	Forest Soil	FGSLGSILWLARYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK
Ga0170824_1104446313	3300031231	Forest Soil	VFGSLGSILWLARYRMEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGENQK
Ga0170824_1151696592	3300031231	Forest Soil	VFGSLGSILWLARYRMEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0310909_107142322	3300031947	Soil	IAGVIWIVFGSLGSILWLARYHEDYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLTMETPATPEK
Ga0306920_1042155231	3300032261	Soil	GSILWLARYRTDYIPGPLGVVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESTASAER
Ga0310810_111217842	3300033412	Soil	ILWLATYRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGAEK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098249

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences