Metagenome / Metatranscriptome Family F098003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098003
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	56 residues
Representative Sequence	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV
Number of Associated Samples	83
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.12 %
% of genes near scaffold ends (potentially truncated)	25.96 %
% of genes from short scaffolds (< 2000 bps)	64.42 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.692 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.462 % of family members)
Environment Ontology (ENVO)	Unclassified (35.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.52% β-sheet: 0.00% Coil/Unstructured: 81.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF12833	HTH_18	12.50
PF07609	DUF1572	12.50
PF00857	Isochorismatase	3.85
PF00383	dCMP_cyt_deam_1	2.88
PF00270	DEAD	1.92
PF01435	Peptidase_M48	1.92
PF00072	Response_reg	0.96
PF00271	Helicase_C	0.96
PF14539	DUF4442	0.96
PF00180	Iso_dh	0.96
PF00156	Pribosyltran	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	3.85
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.69 %
Unclassified	root	N/A	42.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.69 %
Unclassified	root	N/A	42.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.69 %
Unclassified	root	N/A	42.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.31 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	36.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.31 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	36.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.31 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	17.31 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.31 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	17.31 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.31 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	17.31 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.31 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	14.42 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.31 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	14.42 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003267\|soilL1_10162472	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2763	Open in IMG/M
3300003324\|soilH2_10007287	All Organisms → cellular organisms → Bacteria	2910	Open in IMG/M
3300004114\|Ga0062593_103009782	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	539	Open in IMG/M
3300004156\|Ga0062589_100325292	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1204	Open in IMG/M
3300004156\|Ga0062589_101030215	Not Available	772	Open in IMG/M
3300004157\|Ga0062590_101235178	Not Available	731	Open in IMG/M
3300004157\|Ga0062590_103072294	Not Available	500	Open in IMG/M
3300004480\|Ga0062592_101237074	Not Available	700	Open in IMG/M
3300004643\|Ga0062591_100036751	All Organisms → cellular organisms → Bacteria	2636	Open in IMG/M
3300004643\|Ga0062591_100090431	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1939	Open in IMG/M
3300005293\|Ga0065715_10894914	Not Available	576	Open in IMG/M
3300005293\|Ga0065715_11068015	Not Available	528	Open in IMG/M
3300005329\|Ga0070683_100679318	Not Available	986	Open in IMG/M
3300005330\|Ga0070690_100474950	Not Available	931	Open in IMG/M
3300005341\|Ga0070691_10807895	Not Available	572	Open in IMG/M
3300005347\|Ga0070668_100011051	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6721	Open in IMG/M
3300005354\|Ga0070675_101778183	Not Available	569	Open in IMG/M
3300005354\|Ga0070675_102019648	Not Available	532	Open in IMG/M
3300005355\|Ga0070671_100043728	All Organisms → cellular organisms → Bacteria	3722	Open in IMG/M
3300005356\|Ga0070674_100052537	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300005356\|Ga0070674_100357667	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1181	Open in IMG/M
3300005356\|Ga0070674_100830571	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	800	Open in IMG/M
3300005356\|Ga0070674_101770971	Not Available	560	Open in IMG/M
3300005367\|Ga0070667_100223111	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300005444\|Ga0070694_100384125	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1096	Open in IMG/M
3300005535\|Ga0070684_100374420	Not Available	1311	Open in IMG/M
3300005543\|Ga0070672_101083344	Not Available	712	Open in IMG/M
3300005546\|Ga0070696_101905621	Not Available	515	Open in IMG/M
3300005549\|Ga0070704_101017077	Not Available	750	Open in IMG/M
3300005615\|Ga0070702_100928052	Not Available	684	Open in IMG/M
3300005718\|Ga0068866_10551896	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	770	Open in IMG/M
3300005718\|Ga0068866_11322918	Not Available	524	Open in IMG/M
3300005719\|Ga0068861_101492392	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005844\|Ga0068862_100816112	Not Available	912	Open in IMG/M
3300006169\|Ga0082029_1499096	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3879	Open in IMG/M
3300006175\|Ga0070712_100042863	All Organisms → cellular organisms → Bacteria	3113	Open in IMG/M
3300006237\|Ga0097621_101823582	Not Available	580	Open in IMG/M
3300006755\|Ga0079222_11269000	Not Available	667	Open in IMG/M
3300006844\|Ga0075428_100054652	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4375	Open in IMG/M
3300006844\|Ga0075428_101670180	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300006845\|Ga0075421_100002209	All Organisms → cellular organisms → Bacteria	23149	Open in IMG/M
3300006845\|Ga0075421_100005406	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	15442	Open in IMG/M
3300006845\|Ga0075421_100056219	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4976	Open in IMG/M
3300006845\|Ga0075421_101096447	Not Available	895	Open in IMG/M
3300006846\|Ga0075430_100002193	All Organisms → cellular organisms → Bacteria	16177	Open in IMG/M
3300006853\|Ga0075420_100001698	All Organisms → cellular organisms → Bacteria	18736	Open in IMG/M
3300006853\|Ga0075420_100034732	All Organisms → cellular organisms → Bacteria	4503	Open in IMG/M
3300006854\|Ga0075425_100814187	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1070	Open in IMG/M
3300006871\|Ga0075434_100021799	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6232	Open in IMG/M
3300006876\|Ga0079217_10003047	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4764	Open in IMG/M
3300006918\|Ga0079216_10161512	Not Available	1181	Open in IMG/M
3300006918\|Ga0079216_10200701	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300007004\|Ga0079218_11397070	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	747	Open in IMG/M
3300007004\|Ga0079218_12150466	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	646	Open in IMG/M
3300009147\|Ga0114129_11175393	Not Available	957	Open in IMG/M
3300009156\|Ga0111538_10115463	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3411	Open in IMG/M
3300010038\|Ga0126315_11156253	Not Available	524	Open in IMG/M
3300010040\|Ga0126308_11016333	Not Available	581	Open in IMG/M
3300010146\|Ga0126320_1262267	Not Available	574	Open in IMG/M
3300010366\|Ga0126379_10465669	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1328	Open in IMG/M
3300010399\|Ga0134127_13217460	Not Available	534	Open in IMG/M
3300010400\|Ga0134122_10625200	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	999	Open in IMG/M
3300011333\|Ga0127502_10363765	Not Available	704	Open in IMG/M
3300012469\|Ga0150984_100240991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	2653	Open in IMG/M
3300012469\|Ga0150984_115156476	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1620	Open in IMG/M
3300012957\|Ga0164303_11193364	Not Available	556	Open in IMG/M
3300012961\|Ga0164302_10042358	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2195	Open in IMG/M
3300012985\|Ga0164308_10069789	All Organisms → cellular organisms → Bacteria	2358	Open in IMG/M
3300012986\|Ga0164304_10044223	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2383	Open in IMG/M
3300012988\|Ga0164306_10045455	All Organisms → cellular organisms → Bacteria	2626	Open in IMG/M
3300015077\|Ga0173483_10799320	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	544	Open in IMG/M
3300015371\|Ga0132258_10043367	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	10240	Open in IMG/M
3300015371\|Ga0132258_10285092	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4055	Open in IMG/M
3300015371\|Ga0132258_10593615	All Organisms → cellular organisms → Bacteria	2779	Open in IMG/M
3300018476\|Ga0190274_10026523	All Organisms → cellular organisms → Bacteria	3892	Open in IMG/M
3300019248\|Ga0180117_1231814	Not Available	613	Open in IMG/M
3300019263\|Ga0184647_1483976	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1004	Open in IMG/M
3300021445\|Ga0182009_10066093	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300025321\|Ga0207656_10006902	All Organisms → cellular organisms → Bacteria	4113	Open in IMG/M
3300025893\|Ga0207682_10640281	Not Available	500	Open in IMG/M
3300025899\|Ga0207642_10029702	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2267	Open in IMG/M
3300025907\|Ga0207645_10047456	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2743	Open in IMG/M
3300025908\|Ga0207643_10011666	All Organisms → cellular organisms → Bacteria	4745	Open in IMG/M
3300025918\|Ga0207662_10004220	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7536	Open in IMG/M
3300025920\|Ga0207649_11116468	Not Available	622	Open in IMG/M
3300025923\|Ga0207681_10000315	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	35258	Open in IMG/M
3300025981\|Ga0207640_10355023	Not Available	1179	Open in IMG/M
3300027886\|Ga0209486_10827903	Not Available	608	Open in IMG/M
3300027909\|Ga0209382_10089765	All Organisms → cellular organisms → Bacteria	3611	Open in IMG/M
3300031490\|Ga0314825_113115	Not Available	504	Open in IMG/M
3300031493\|Ga0314826_111887	Not Available	871	Open in IMG/M
3300031548\|Ga0307408_100063266	All Organisms → cellular organisms → Bacteria	2706	Open in IMG/M
3300031548\|Ga0307408_101776729	Not Available	589	Open in IMG/M
3300031731\|Ga0307405_10066842	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2294	Open in IMG/M
3300031852\|Ga0307410_10480595	Not Available	1019	Open in IMG/M
3300031901\|Ga0307406_10701114	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	845	Open in IMG/M
3300031939\|Ga0308174_10218871	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1462	Open in IMG/M
3300031995\|Ga0307409_101830131	Not Available	636	Open in IMG/M
3300031996\|Ga0308176_10518514	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1213	Open in IMG/M
3300032002\|Ga0307416_100873258	Not Available	998	Open in IMG/M
3300032002\|Ga0307416_103604862	Not Available	518	Open in IMG/M
3300032080\|Ga0326721_10855049	Not Available	573	Open in IMG/M
3300032091\|Ga0318577_10605382	Not Available	520	Open in IMG/M
3300033412\|Ga0310810_10057871	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4706	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.00%
Host-Associated	Host-Associated	50.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.00%
Terrestrial	Environmental → Terrestrial	44.23%
Aquatic	Environmental → Aquatic	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.50%
Freshwater	Environmental → Aquatic → Freshwater	5.77%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.38%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	16.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.92%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031490	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031493	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
soilL1_101624724	3300003267	Sugarcane Root And Bulk Soil	MSRSIRYAVLSLAVAAATACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
soilH2_100072872	3300003324	Sugarcane Root And Bulk Soil	MSRTIRYAVLACAVAAASACSSSVTEPTAAQKCTAQSQNSSQSCVSLDYINPKV*
Ga0062593_1030097821	3300004114	Soil	MSRSIRYAVLALAVAAATACSSSVTEPTAAPKCTAKSQNSSQSCVSLDLINPK
Ga0062589_1003252922	3300004156	Soil	MPRTIRYAVLSVAVATIGACSSSVTEPTAAPKCAANSKNVPQSCVSLDYINPVV*
Ga0062589_1010302151	3300004156	Soil	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSMDYINPRV*
Ga0062590_1012351782	3300004157	Soil	MSRTIRYAVLSLAVAAISACSSSVTEPTAAPKCTANSKNAPQSCASLDYINPVV*
Ga0062590_1030722942	3300004157	Soil	PPLEPYMPRTIRYAVLALAVAATTACSSSVTEPTAEQKCTARTQNAAQSCVSMDFINPKV
Ga0062592_1012370741	3300004480	Soil	ERYMSRTIRYAVLGLAVAAITACSSSITEPTATPKCTTKSQTSTQSCVSADFINPVV*
Ga0062591_1000367512	3300004643	Soil	MSRTIRCAVLFLAVTTTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPRV*
Ga0062591_1000904312	3300004643	Soil	MYRANPYPPPERYMSRTIRYAVLSLAVAAISACSSSVTEPTAAPKCTANSKNAPQSCASLDYINPVV*
Ga0065715_108949141	3300005293	Miscanthus Rhizosphere	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKAQNSSQSCVSLDYINPRV*
Ga0065715_110680152	3300005293	Miscanthus Rhizosphere	MSRTIRYAVLSLALVSTAACSSSVTEPTAAPKCTAKSQNATQSCVSMDFINPKV*
Ga0070683_1006793182	3300005329	Corn Rhizosphere	MSRTIRYAVFSLAIAATTACSSSVTEPTAPKCATNSTNASQSCASLDLINPKV*
Ga0070690_1004749501	3300005330	Switchgrass Rhizosphere	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPRV*
Ga0070691_108078951	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	FLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
Ga0070668_1000110514	3300005347	Switchgrass Rhizosphere	MPRTIRYAVLAVAVATIGACSSSVTEPTPASKCTANSKNAPQSCASMDFINPVV*
Ga0070675_1017781832	3300005354	Miscanthus Rhizosphere	TPPPERYMSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKAQNSSQSCVSLDYINPRV
Ga0070675_1020196482	3300005354	Miscanthus Rhizosphere	TPPPERYMSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSMDYINPRV
Ga0070671_1000437284	3300005355	Switchgrass Rhizosphere	MSRTIRCAVLFLAVTITACSSSVTEPTAAPKCTAKSQNSSQSCVSMDYINPKV*
Ga0070674_1000525372	3300005356	Miscanthus Rhizosphere	MSRTIRCAVLFLAVTITACSSSVTEPTAAPKCTAKSQNGSQACVSMDYINPKV*
Ga0070674_1003576672	3300005356	Miscanthus Rhizosphere	MPRTIRYAVLSVAVATISACSSSVTEPTAAPKCAANSKNVPQSCVSLDYINPVV*
Ga0070674_1008305712	3300005356	Miscanthus Rhizosphere	MSRTIRYAVLSLALVATAACSSSVTEPTAAPKCTAKSQNASQSCVSMDFINPKV*
Ga0070674_1017709711	3300005356	Miscanthus Rhizosphere	MSRTIRCAVVFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
Ga0070667_1002231112	3300005367	Switchgrass Rhizosphere	MSRTIRYAVFSLAIAATTACSSSVTEPTTPKCATNSTNASQSCASLDLINPKV*
Ga0070694_1003841252	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTIRCAVLFLAVTTTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINP
Ga0070684_1003744202	3300005535	Corn Rhizosphere	MSRTIRYAVFSLAIAATTACSSSVTEPTAPKCAANSTNASQSCASLDLINPKV*
Ga0070672_1010833441	3300005543	Miscanthus Rhizosphere	PTLERYMPRTIRYAVLSVAVATIGACSSSVTEPTAAPKCAANSKNVPQSCVSLDYINPVV
Ga0070696_1019056212	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	YRANTTPPPERYMSRTIRCAVVFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
Ga0070704_1010170772	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTIRCAVVFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPRV*
Ga0070702_1009280522	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	TPPPERYMSRTIRCAVLFLAVTTTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPRV
Ga0068866_105518962	3300005718	Miscanthus Rhizosphere	MSRTIRCAVLFLAVTITACSSSVTEPTAAPKCTAKSQNSSQACVSMDYINPKVKRERFRDRLGLER
Ga0068866_113229181	3300005718	Miscanthus Rhizosphere	PPTLERYMSRTIRYAVFSLAIAATTACSSSVTEPTAPKCATNSTNASQSCASLDLINPKV
Ga0068861_1014923921	3300005719	Switchgrass Rhizosphere	MYRANPYPHWSDYMPRTIRYAVLALAVAAATACSSSVTEPTATPKCTAKTQNSSQSCVSLDLINPKV*
Ga0068862_1008161122	3300005844	Switchgrass Rhizosphere	MSRTIRYAVLGLAVAAITACSSSITEPSATPKCTTATQTQNQSCVSLDYINPKV*
Ga0082029_14990962	3300006169	Termite Nest	MSRTIRYAALTLAVASAACSSSVTEPTPAPKCTATQNGATQSCVSLDYINPKV*
Ga0070712_1000428632	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTIRCAVLVLAVTATACSSSVTEPTAARTCTAKSQNNSQSCLSQDYINPKV*
Ga0097621_1018235821	3300006237	Miscanthus Rhizosphere	LERYMSRTIRYAVFSLAIAATTACSSSVTEPTAPKCATNSTNASQSCASLDLINPKV*
Ga0079222_112690002	3300006755	Agricultural Soil	TIRYAVLALAVASIGACSSSITEPTAAPKCAANTKNAPQSCVSLDYINPVV*
Ga0075428_1000546522	3300006844	Populus Rhizosphere	MPRTIRCAVLFLAVATTACSSSVTEPTAAPKCTAKSQTSSQSCVSLDYINPKV*
Ga0075428_1016701802	3300006844	Populus Rhizosphere	MSRTVRYAVLAIAVAAASACSNSITEPTATPKCTAQSQNSSQSCVSFDLINPKV*
Ga0075421_1000022094	3300006845	Populus Rhizosphere	MSRAIRYAVLALAVATAACSSSVTEPTAAPKCTDTQNSATQSCVSLDYINPRV*
Ga0075421_10000540610	3300006845	Populus Rhizosphere	MYRANPTPPPERYMPRTIRCAVLFLAVATTACSSSVTEPTAAPKCTAKSQTSSQSCVSLDYINPKV*
Ga0075421_1000562192	3300006845	Populus Rhizosphere	MYRAHPHPLERYMSRTVRYAILALAVSTAACSSSVTEPTAAPKCMATQNSATQSCVSLDYINPKV*
Ga0075421_1010964472	3300006845	Populus Rhizosphere	MPRTIRYAVLAVAVATIGACSSSVTEPTPAPKCTANSKNAPQSCASMDFINPVV*
Ga0075430_1000021932	3300006846	Populus Rhizosphere	MYRGDTTHHLERYMSRTIRYAILALAVATAACSSSVTEPTATPNCAATQNSSTQACASLDLINPKV*
Ga0075420_1000016985	3300006853	Populus Rhizosphere	MSRTIRYAILALAVATAACSSSVTEPTATPNCAATQNSSTQACASLDLINPKV*
Ga0075420_1000347323	3300006853	Populus Rhizosphere	MSRTIRYAVLALAVASISACSSSVTEPTPAPKCAATSQSGSTSCVSLDLINPKI*
Ga0075425_1008141871	3300006854	Populus Rhizosphere	MPRTIRCAVLFLAVATTACSSSVTEPTAAPKCTAKSQTSSQSCVSLDYINP
Ga0075434_1000217994	3300006871	Populus Rhizosphere	MSRTIRCAVLFLAVTITACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPRV*
Ga0079217_100030474	3300006876	Agricultural Soil	MSRTIRYAVLALAVATAACSSSVTEPTAAPKCTNAQNGATQSCVSLDLINPKV*
Ga0079216_101615122	3300006918	Agricultural Soil	MSRTIRYAILALAVATAACSSSVTEPTTAPKCAAAQNGSTQSCASFDYINPKV*
Ga0079216_102007011	3300006918	Agricultural Soil	TIRYAVLALAVATAACSSSVTEPTAAPKCTNAQNGATQSCVSLDLINPKV*
Ga0079218_113970702	3300007004	Agricultural Soil	MSRTIRYAILALAVATAACSSSVTEPTATPKCAATQNSSTQSCASFDYINPKV*
Ga0079218_121504662	3300007004	Agricultural Soil	MSRTIRYAVLSFAVAAISACSSSVTEPTAAPKCTANSKNAPQSCASLDYINPVV*
Ga0114129_111753931	3300009147	Populus Rhizosphere	MSRTIRYAVLALAVAAATACSSSVTEPTAAQKCTAKSQNSSQSCVSLDYINPKV*
Ga0111538_101154632	3300009156	Populus Rhizosphere	MSRTIRCAVLFLAVIATACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
Ga0126315_111562532	3300010038	Serpentine Soil	MSRTIRYAVLSLAVAATTACSSSVTEPTAEQKCTAKSQNAAQSCVSMDFINPKV*
Ga0126308_110163332	3300010040	Serpentine Soil	MSRTIRYAVLSLAVLATAACSSSVTEPTAAPKCTAKSQNASQSCVSMDFINPKV*
Ga0126320_12622672	3300010146	Soil	MSRTIRYAVLALAVAAATACSSSITEPTAAPKCTAKSQNSTPSCVSLDYINPKV*
Ga0126379_104656692	3300010366	Tropical Forest Soil	MYRANPIPPPERYMSRTIRCAVLFVAVITTACSSSVTEPTAVQKCTAKSQNSSQSCVSTDYINPKV*
Ga0134127_132174601	3300010399	Terrestrial Soil	YPHWSDYMARTIRYTVLALAVAAATACSSSVTEPTATPKCTAKTQNSSQSCVSLDLINPKV*
Ga0134122_106252001	3300010400	Terrestrial Soil	MYRANPHPHLERYMSRTIRYAVLALAVAGATACSSSVTEPTAAQKCAAKSQNSSQSCVSLDYINPKV
Ga0127502_103637652	3300011333	Soil	MSRTIRYAVLALAVVSATACSASVTEPTAAPKCTTTSQNGTTSCLSLDYINPKI*
Ga0150984_1002409913	3300012469	Avena Fatua Rhizosphere	MSRTIRCAVLFLAVTVTACSSSVTEPSAAPKCTAKTQNSSQSCVSMDYINPKV*
Ga0150984_1151564762	3300012469	Avena Fatua Rhizosphere	MSRTIRYAVLALAIAATTACSSSVTEPTAPKCATNSTNASQSCASLDLINPKV*
Ga0164303_111933642	3300012957	Soil	MSRTIRYAVLALAVAAATACSSSVTEPTAAQKCTAKSQNSSQSCVSLDFINPKV*
Ga0164302_100423582	3300012961	Soil	MSRTIRCAVVFLAVITTACSSSVTEPTAAPKCIAKSQNSSQSCVSLDYINPKV*
Ga0164308_100697891	3300012985	Soil	PPERYMSRTIRCAVVFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
Ga0164304_100442232	3300012986	Soil	MSRTIRCAVVFLAVITTAFSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
Ga0164306_100454551	3300012988	Soil	MYRANPIPHLERYMPRTIRYAVLAIAVASATACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV*
Ga0173483_107993201	3300015077	Soil	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKSQNGSQSCVSLDYINP
Ga0132258_100433676	3300015371	Arabidopsis Rhizosphere	MSRTIRFAVLAFAVAAATACSSSVTEPTAAPKCTAQSQNSSQSCVSLDYINPKV*
Ga0132258_102850922	3300015371	Arabidopsis Rhizosphere	MPRTIRCAVLFLAVTTTACSSSVTEPTAAPKCTAKSQTSSQSCVSLDYINPKV*
Ga0132258_105936153	3300015371	Arabidopsis Rhizosphere	MYRANPTPKLERYMSRTIRYAVLAFAVAAATACSSSVTEPTAAQKCTAQQQNSSQSCVSLDFINPKV*
Ga0190274_100265234	3300018476	Soil	MPRTIRYAVLAVAVATISACSSSVTEPTAAPKCTANSKNAPQSCASLDYINPVV
Ga0180117_12318142	3300019248	Groundwater Sediment	MSRTIRYAVLSLAVAAISACSSSVTEPTAAPKCTANSKNAPQSCASLDYINPVV
Ga0184647_14839762	3300019263	Groundwater Sediment	MSRTIRYTVLSLAVAAISACSSSVTEPTAAPKCTANSKNAPQSCASLDYINPVV
Ga0182009_100660933	3300021445	Soil	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKAQNSSQSCVSLDYIN
Ga0207656_100069022	3300025321	Corn Rhizosphere	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPRV
Ga0207682_106402812	3300025893	Miscanthus Rhizosphere	MPRTIRYAVLSVAVATIGACSSSVTEPTAAPKCAANSKNVPQSCVSLDYINPVV
Ga0207642_100297022	3300025899	Miscanthus Rhizosphere	MSRTIRCAVVFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV
Ga0207645_100474562	3300025907	Miscanthus Rhizosphere	MSRTIRYAVFSLAIAATTACSSSVTEPTAPKCATNSTNASQSCASLDLINPKV
Ga0207643_100116667	3300025908	Miscanthus Rhizosphere	MPRTIRYAVLAVAVATIGACSSSVTEPTPASKCTANSKNAPQSCASMDFINPVV
Ga0207662_100042207	3300025918	Switchgrass Rhizosphere	MSRTIRCAVLFLAVTTTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPRV
Ga0207649_111164682	3300025920	Corn Rhizosphere	PILERYMSRTIRYAVFSLAIAATTACSSSVTEPTAPKCATNSTNASQSCASLDLINPKV
Ga0207681_1000031511	3300025923	Switchgrass Rhizosphere	MPRTIRYAVLAVAVATISACSSSVTEPTPASKCTANSKNAPQSCASMDFINPVV
Ga0207640_103550232	3300025981	Corn Rhizosphere	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKAQNSSQSCVSLDYINPRV
Ga0209486_108279032	3300027886	Agricultural Soil	PIRYAVLGVAVAAITACSASVTEPTPAAKCAATQNSSSTSCVSLDLINPKV
Ga0209382_100897652	3300027909	Populus Rhizosphere	MSRTIRYAVLALAVASISACSSSVTEPTPAPKCAATSQSGSTSCVSLDLINPKI
Ga0314825_1131151	3300031490	Soil	LLERYMSRTIRYAVLALAVAAISACSSSVTEPTVPKCTANSKNAPQSCVSLDYINPVV
Ga0314826_1118871	3300031493	Soil	LERYMSRTIRYAVLALAVVSATACSASITEPTAAPKCTTTSQNGTTSCLSLDYINPKI
Ga0307408_1000632664	3300031548	Rhizosphere	MSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKSQNSSQSCVSLDYINPKV
Ga0307408_1017767292	3300031548	Rhizosphere	MPRTIRYAVLTVAVATISACSSSVTEPTAAPKCPANSKNVPQSCASLDYINPVV
Ga0307405_100668422	3300031731	Rhizosphere	MSRTIRYAVLGLAVAAITACSSSITEPTATPKCTTKSQTNTQSCVSADLINPVV
Ga0307410_104805952	3300031852	Rhizosphere	MPRTIRYTVLAVAVATISACSSSVTEPTAAPKCPANSKNVPQSCASLDYINPVV
Ga0307406_107011141	3300031901	Rhizosphere	MSRPIRYAVLGVAVAAITACSASVTEPTPAAKCAATQNSSSTSCVSLDLINPKV
Ga0308174_102188712	3300031939	Soil	MSRTIRYAVLSLAVLATAACSSSVTEPTAAPKCTAKSQNASQSCVSMDFINPKV
Ga0307409_1018301312	3300031995	Rhizosphere	LTTTASAKCIAPIPPTLERYMSRPIRYAVLGVAVAAITACSASVTEPTPAAKCAATQNSSSTSCVSLDLINPKV
Ga0308176_105185142	3300031996	Soil	MSRTIRYAVLALAIAATTACSSSVTEPTAPKCATNSTNASQSCASLDLINPKV
Ga0307416_1008732582	3300032002	Rhizosphere	TAPILPTLERYMPRTIRYAVLTVAVATISACSSSVTEPTAAPKCPANSKNVPQSCASLDYINPVV
Ga0307416_1036048621	3300032002	Rhizosphere	MPRTIRYAVLSVAVATISACSSSVTEPTAAPKCAANSKNVPQSCVSLDYINPVV
Ga0326721_108550492	3300032080	Soil	MPRTIRYAVLAVAVATISACSSSVTEPTAAPKCTANSRNVPQSCASLDYINPVV
Ga0318577_106053822	3300032091	Soil	MSRTIRCVVLFLVVTATACSSSVTEPTAPKCTAKSQNNSQSCLSQDYINPKV
Ga0310810_100578714	3300033412	Soil	MYRANSTPPPERYMSRTIRCAVLFLAVITTACSSSVTEPTAAPKCTAKAQNSSQSCVSLDYINPRV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098003

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences