Metagenome / Metatranscriptome Family F097966

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097966
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	61 residues
Representative Sequence	GLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG
Number of Associated Samples	84
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.88 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.077 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.769 % of family members)
Environment Ontology (ENVO)	Unclassified (34.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (36.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.09% β-sheet: 0.00% Coil/Unstructured: 77.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01869	BcrAD_BadFG	19.23
PF01594	AI-2E_transport	11.54
PF00106	adh_short	8.65
PF08450	SGL	4.81
PF00296	Bac_luciferase	4.81
PF13520	AA_permease_2	4.81
PF07690	MFS_1	2.88
PF13561	adh_short_C2	1.92
PF00759	Glyco_hydro_9	0.96
PF13376	OmdA	0.96
PF08281	Sigma70_r4_2	0.96
PF12680	SnoaL_2	0.96
PF13183	Fer4_8	0.96
PF00596	Aldolase_II	0.96
PF00266	Aminotran_5	0.96
PF10099	RskA	0.96
PF04672	Methyltransf_19	0.96
PF07282	OrfB_Zn_ribbon	0.96
PF03088	Str_synth	0.96
PF01513	NAD_kinase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	11.54
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	5.77
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	4.81
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	4.81

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	87.50 %
Unclassified	root	N/A	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	87.50 %
Unclassified	root	N/A	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	71.15 %
Unclassified	root	N/A	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.92 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.92 %
Unclassified	root	N/A	1.92 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.92 %
Unclassified	root	N/A	1.92 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.96 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Unclassified	root	N/A	1.92 %
Couchioplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes	0.96 %
Agromyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	0.96 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.96 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Unclassified	root	N/A	1.92 %
Agromyces humi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces humi	0.96 %
Couchioplanes caeruleus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	0.96 %
unclassified Actinoplanes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes	0.96 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Unclassified	root	N/A	1.92 %
Actinoplanes sp. OR16	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. OR16	0.96 %
Agromyces humi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces humi	0.96 %
Couchioplanes caeruleus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	0.96 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_106081579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	609	Open in IMG/M
3300005363\|Ga0008090_15188014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	521	Open in IMG/M
3300005363\|Ga0008090_15857391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	859	Open in IMG/M
3300005434\|Ga0070709_10200029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1414	Open in IMG/M
3300005435\|Ga0070714_100565026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1090	Open in IMG/M
3300005436\|Ga0070713_100587118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1057	Open in IMG/M
3300005439\|Ga0070711_100728796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	836	Open in IMG/M
3300005444\|Ga0070694_100287846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1255	Open in IMG/M
3300005530\|Ga0070679_100969305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	794	Open in IMG/M
3300005614\|Ga0068856_102624927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300005713\|Ga0066905_100153395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1662	Open in IMG/M
3300005713\|Ga0066905_100877412	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005921\|Ga0070766_10769469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	655	Open in IMG/M
3300006028\|Ga0070717_10006512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8593	Open in IMG/M
3300006028\|Ga0070717_10562070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1033	Open in IMG/M
3300006028\|Ga0070717_11971241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300006059\|Ga0075017_100994673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300006086\|Ga0075019_10465055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	781	Open in IMG/M
3300006172\|Ga0075018_10586362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300006173\|Ga0070716_100436851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	950	Open in IMG/M
3300006804\|Ga0079221_11160544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300009162\|Ga0075423_10305625	Not Available	1667	Open in IMG/M
3300009162\|Ga0075423_10881016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	949	Open in IMG/M
3300010043\|Ga0126380_10016152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3482	Open in IMG/M
3300010047\|Ga0126382_10786279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	810	Open in IMG/M
3300010048\|Ga0126373_10854813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300010048\|Ga0126373_11174924	Not Available	833	Open in IMG/M
3300010358\|Ga0126370_10164665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1634	Open in IMG/M
3300010358\|Ga0126370_10219497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	1451	Open in IMG/M
3300010358\|Ga0126370_12245271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces humi	539	Open in IMG/M
3300010360\|Ga0126372_11743919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	665	Open in IMG/M
3300010362\|Ga0126377_10688148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1074	Open in IMG/M
3300010371\|Ga0134125_10331561	All Organisms → cellular organisms → Bacteria	1689	Open in IMG/M
3300010371\|Ga0134125_11848336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	657	Open in IMG/M
3300010371\|Ga0134125_12949982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300010376\|Ga0126381_103898777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	582	Open in IMG/M
3300010398\|Ga0126383_11483600	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300010398\|Ga0126383_12345274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	619	Open in IMG/M
3300012199\|Ga0137383_10173369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1580	Open in IMG/M
3300012199\|Ga0137383_10233890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1347	Open in IMG/M
3300012199\|Ga0137383_10483044	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300012200\|Ga0137382_11112998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300012211\|Ga0137377_11943420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300012363\|Ga0137390_11609951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300015371\|Ga0132258_13115424	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300016387\|Ga0182040_10642026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	863	Open in IMG/M
3300017966\|Ga0187776_11452693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	525	Open in IMG/M
3300017974\|Ga0187777_10070559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2265	Open in IMG/M
3300021171\|Ga0210405_10589435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	866	Open in IMG/M
3300021478\|Ga0210402_11868972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300021560\|Ga0126371_11387011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	834	Open in IMG/M
3300025320\|Ga0209171_10484271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	616	Open in IMG/M
3300025898\|Ga0207692_10022078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2924	Open in IMG/M
3300025906\|Ga0207699_10709225	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300025939\|Ga0207665_11438574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300026088\|Ga0207641_11719239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	629	Open in IMG/M
3300026217\|Ga0209871_1012903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1559	Open in IMG/M
3300027010\|Ga0207839_1033440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300027174\|Ga0207948_1013345	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300027911\|Ga0209698_10841980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	691	Open in IMG/M
3300031545\|Ga0318541_10103546	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300031549\|Ga0318571_10008293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2351	Open in IMG/M
3300031573\|Ga0310915_10042262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2906	Open in IMG/M
3300031668\|Ga0318542_10180273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1060	Open in IMG/M
3300031681\|Ga0318572_10373757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	846	Open in IMG/M
3300031719\|Ga0306917_10832165	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300031747\|Ga0318502_10188337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1190	Open in IMG/M
3300031769\|Ga0318526_10119431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1062	Open in IMG/M
3300031771\|Ga0318546_10382990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300031778\|Ga0318498_10072464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1548	Open in IMG/M
3300031778\|Ga0318498_10224994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	848	Open in IMG/M
3300031782\|Ga0318552_10585868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	569	Open in IMG/M
3300031793\|Ga0318548_10204441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	969	Open in IMG/M
3300031797\|Ga0318550_10047345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1920	Open in IMG/M
3300031799\|Ga0318565_10005270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4972	Open in IMG/M
3300031799\|Ga0318565_10182413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1021	Open in IMG/M
3300031805\|Ga0318497_10044105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2279	Open in IMG/M
3300031831\|Ga0318564_10129470	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300031845\|Ga0318511_10440463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300031880\|Ga0318544_10112412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1032	Open in IMG/M
3300031897\|Ga0318520_10184280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1225	Open in IMG/M
3300031897\|Ga0318520_11006733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300031938\|Ga0308175_100548864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1236	Open in IMG/M
3300031942\|Ga0310916_10134103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2028	Open in IMG/M
3300031945\|Ga0310913_10219905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1330	Open in IMG/M
3300031945\|Ga0310913_10839870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	647	Open in IMG/M
3300031954\|Ga0306926_10395398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1706	Open in IMG/M
3300031981\|Ga0318531_10475113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300032009\|Ga0318563_10661782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300032060\|Ga0318505_10270376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. OR16	801	Open in IMG/M
3300032063\|Ga0318504_10349499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	702	Open in IMG/M
3300032076\|Ga0306924_10184181	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300032076\|Ga0306924_11418006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300032090\|Ga0318518_10374884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	730	Open in IMG/M
3300032160\|Ga0311301_13039632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	503	Open in IMG/M
3300032205\|Ga0307472_100034162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2990	Open in IMG/M
3300032261\|Ga0306920_100613188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1609	Open in IMG/M
3300032770\|Ga0335085_11882360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300032805\|Ga0335078_11958104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	629	Open in IMG/M
3300032828\|Ga0335080_10209908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2140	Open in IMG/M
3300032828\|Ga0335080_11399706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	695	Open in IMG/M
3300032828\|Ga0335080_11710260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	617	Open in IMG/M
3300032892\|Ga0335081_10128150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3689	Open in IMG/M
3300033290\|Ga0318519_10594199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	672	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.19%
Host-Associated	Host-Associated	4.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.38%
Aquatic	Environmental → Aquatic	4.81%
Plants	Host-Associated → Plants	4.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.38%
Sediment	Environmental → Aquatic → Sediment	3.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.46%
Loam	Environmental → Terrestrial → Soil → Loam	18.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1060815792	3300005332	Tropical Forest Soil	NLGNFEGLGTVDGMRLCRAGHFKPFNTKTTGYQDNMVSWPTVEPATDYSANSTLAFALAAATR*
Ga0008090_151880141	3300005363	Tropical Rainforest Soil	TVSGMRACSAGSYKPFDTKTVAYEDNVVSWPSVEPALDYTANSLLAFALATGNS*
Ga0008090_158573911	3300005363	Tropical Rainforest Soil	TVSGMQACRAGHFKPFNTKTTGYEDNVVSWPSVEPADDYSANSTLAFALGAGPSAP*
Ga0070709_102000291	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRA*
Ga0070714_1005650261	3300005435	Agricultural Soil	TTDGPSSIGNFTGLGTVSGMRACSAGQFAPFNNATAGYEDNVVSWPSVEPAGDYTAASLFAFALGGDQGSGLG*
Ga0070713_1005871181	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LGTVDGMRACSAGHFAPFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALGAGQGSGLG
Ga0070711_1007287963	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRA*
Ga0070694_1002878461	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRA*
Ga0070679_1009693052	3300005530	Corn Rhizosphere	TDGPSATGNFQGLGAVDGMRACSAGHFAPFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALGADQGSGLG*
Ga0068856_1026249271	3300005614	Corn Rhizosphere	CSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRA*
Ga0066905_1001533951	3300005713	Tropical Forest Soil	SSPDNFSGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHT*
Ga0066905_1008774123	3300005713	Tropical Forest Soil	GPSNLSNFEGLGTVDGMRLCRAGHFKPFNTKTTGYQDNVVSWPTVEPATDYSANSTLAFALAAAR*
Ga0070766_107694692	3300005921	Soil	IQLGAVTDGPSSPQNFVGLGTVSGMRACSAGHFGPFDTKTAKYEDNVVSWPSVEPANDYVANSLLAFAFAAGPGRY*
Ga0070717_1000651211	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DGMRACRAGHYKGFNTATAAYEDNVVSWPSVEPAADYTANSLLAFALGTQAGGRHQH*
Ga0070717_105620701	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	NFQGLGTVDGMRACSAGHFAPFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALGAGSDLG*
Ga0070717_119712412	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GNFQGLGTVDGMRACSAGHFAPFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALGADQGSGLG*
Ga0075017_1009946731	3300006059	Watersheds	PALQALIPLTVPSPGNFSGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDHG*
Ga0075019_104650551	3300006086	Watersheds	GMRACSAGNFAPYNTKTAGYEDNVVSWPSVEPAADYTANSLLAFALGGSDLG*
Ga0075018_105863622	3300006172	Watersheds	VDGPSSPGNFSGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDHG*
Ga0070716_1004368513	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	CSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQGR*
Ga0079221_111605441	3300006804	Agricultural Soil	LTGHGNIQVGATSDGPSNLGNFVGLGTVSGMRACRAGHFKPFNTKTTGYEDNVVSWPSVEPASDYTANSTLAFALAAATR*
Ga0075423_103056251	3300009162	Populus Rhizosphere	QVGATSDGPSALDNFVGLGTVDGMRACRAGHFKPFNTKTTGYEDNVVSWPSVEPASDYTANSTLAFALAAATR*
Ga0075423_108810163	3300009162	Populus Rhizosphere	QVGATSDGPSALDNFVGLGTVDGMRACRAGHFKPFNTKTTGYEDNVVSWPSVEPASDYTANSTLAFALAAAG*
Ga0126380_100161521	3300010043	Tropical Forest Soil	GLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG*
Ga0126382_107862791	3300010047	Tropical Forest Soil	TSDGPSALDNFVGLGTVDGMRACRAGHFKPFNTKTTGYEDNVVSWPSVEPASDYTANSTLAFALAAAAH*
Ga0126373_108548133	3300010048	Tropical Forest Soil	GTVTGMRACSAGNFSLFDTKTAKYEDNVVSWPSVEPSDDYTANSLLAFALAAAHR*
Ga0126373_111749242	3300010048	Tropical Forest Soil	RACSAGDYRPFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRG*
Ga0126370_101646652	3300010358	Tropical Forest Soil	RACHAGSYRLFNTKAAAYEDNVISWPSVEPAADYTANSLLAFALAAQS*
Ga0126370_102194974	3300010358	Tropical Forest Soil	NFSGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHT*
Ga0126370_122452712	3300010358	Tropical Forest Soil	ACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFVLAAQDGS*
Ga0126372_117439191	3300010360	Tropical Forest Soil	LGTVDGMRLCRAGHFKPFNTKTTGYQDNVVSWPTVEPATDYSANSTLAFALAAVTR*
Ga0126377_106881481	3300010362	Tropical Forest Soil	LGTVDGMRACRAGHFKPFNTKTTGYEDNVVSWPSVEPASDYTANSTLAFALAAATR*
Ga0134125_103315613	3300010371	Terrestrial Soil	GTVSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQGR*
Ga0134125_118483362	3300010371	Terrestrial Soil	PSATGNFQGLGTVDGMRACSAGHFAPFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALGADQGSGLG*
Ga0134125_129499822	3300010371	Terrestrial Soil	GTVSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRA*
Ga0126381_1038987772	3300010376	Tropical Forest Soil	GSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG*
Ga0126383_114836001	3300010398	Tropical Forest Soil	NFSGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG*
Ga0126383_123452741	3300010398	Tropical Forest Soil	PSSPDNFSGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHT*
Ga0137383_101733693	3300012199	Vadose Zone Soil	MLDAARMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG*
Ga0137383_102338901	3300012199	Vadose Zone Soil	MKHGHRFNIGNFVGLGTVTGMRACHAGNFKPFNTATTGYEDNVASWPSVEPSDDYSAISTLAFASPP
Ga0137383_104830442	3300012199	Vadose Zone Soil	VDGPSSPDNFVGLGTVDGMRACSAGQYKPFNTAAAGYEDNVVSWPSVEPAGDYSANSTLAFALAAGQRG*
Ga0137382_111129981	3300012200	Vadose Zone Soil	DGPSSPDNFSGLGTVSGMRACSAGSYKPFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHG*
Ga0137377_119434201	3300012211	Vadose Zone Soil	MKHGHRFNIGNFVGLGTVTGMRACHAGNFKPFNTATTGYEDNVVSWPSVEPSDDYSAISTLAFALAAAAR*
Ga0137390_116099512	3300012363	Vadose Zone Soil	GLGTVSGMRACRAGHFKPFNTAAAGYEDNVVSWPSVEPAADYTANSLLAFALGAKSGGRDRH*
Ga0132258_131154241	3300015371	Arabidopsis Rhizosphere	LGTVSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG*
Ga0182040_106420261	3300016387	Soil	SDGPSGIGNFRGLGTVKGMKACRAGDFKPFNTKTTGYEDNVVSWPSVEPAADYTAVSTLAFALAAH
Ga0187776_114526932	3300017966	Tropical Peatland	PDNFSGLGTVSGMRACSAGSYKLFDTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG
Ga0187777_100705591	3300017974	Tropical Peatland	SGLGTVPGMRACSAGSFTPFDTSTASYEDNVVSWPSVEPAADYTAASLFAFALGGAGGPGLGR
Ga0210405_105894351	3300021171	Soil	SIGNFVGLGTVSGMRACSAGQFAPFNTATAGYEDNVVSWPSVEPANDYAAASLFAFALGGSGLG
Ga0210402_118689722	3300021478	Soil	CSAGSYKMFNTKTAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDHG
Ga0126371_113870111	3300021560	Tropical Forest Soil	ACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDGG
Ga0209171_104842712	3300025320	Iron-Sulfur Acid Spring	IVSGMRRCSAGHYRPFNTKTVGYEDNVVSWPSVEPALDYSAASLLAFALAAAGRG
Ga0207692_100220785	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	CSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRA
Ga0207699_107092251	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PDNFSGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHG
Ga0207665_114385742	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	HYKGFNTATAAYEDNVVSWPSVEPAADYTANSLLAFALGAQAGGRHQH
Ga0207641_117192393	3300026088	Switchgrass Rhizosphere	LGTVSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYSANSLLAFALAAQDRA
Ga0209871_10129033	3300026217	Permafrost Soil	TGLGTVSGMRACSAGNYRPFNTKAAVYQDNVVSWPSVEPAEDYTANSLLAFALAAGGPPTPRY
Ga0207839_10334402	3300027010	Tropical Forest Soil	MRPRSRKTTVPGMRACSAGRFALFNTATAGYEDNVVSWPSVEPAADYTAASLFAFALGGAGLG
Ga0207948_10133451	3300027174	Forest Soil	SIGNFTGLGTVPGMRACSAGQFAPFNNATAGYEDNVVSWPSVEPANDYTAASLFAFALGGAGLG
Ga0209698_108419802	3300027911	Watersheds	VPGMRACSAGTFAPFNTATAGYEDNVVSWPSVEPAADYAAASLLAFALGQAGLG
Ga0318541_101035463	3300031545	Soil	NIQVGATTDGPSNLGNFVGLGTVTGMRACRAGSFKPFNTKTTGYEDNVVSWPSVEPAADYTANSTLAFALAAAS
Ga0318571_100082931	3300031549	Soil	VDGPSASGNFTGLATVPGMRVCGHGSYGAFDNATAAYEDNVVSWPSVEPASDYSAISLLAFAFGTAGLG
Ga0310915_100422623	3300031573	Soil	DGPSSIGNFVGQGTVPGMRACSAGRFAPINTTTAGYEDNVVSWPSVEPAADYSAASLFAFALGSGIG
Ga0318542_101802732	3300031668	Soil	TVDGPSSPDNFVGLGTVSGMRACGYGSYGPFNNGAAGYEDNVVSWPSVEPASDYSAISLLAFGYGAAGVG
Ga0318572_103737571	3300031681	Soil	FTGLATVPGMRACGHGSYGAFDNATAAYEDNVVSWPSVEPASDYSAISLLAFAFGTAGLG
Ga0306917_108321651	3300031719	Soil	GPSSPDNFVGLGTVSGMRACGYGSYGLFSNGAAGYEDNVVSWPSVEPAADYSAISLLAFGYGAAGIG
Ga0318502_101883372	3300031747	Soil	VTGMRACRAGRFAPFNTTTAGYEDNVVSWPSVEPADDYAAASLFAFALGGAGLG
Ga0318526_101194312	3300031769	Soil	GPSGIGNFVGLGTVPGMRACRAGDFKPFDTKTTGYEDNVVSWPSVEPAADYTAISTLAFALGAAG
Ga0318546_103829901	3300031771	Soil	VSGMRACSAGQFAPFNTATAGYEDNVVSWPSVEPALDYAAASMFAFALGGSGLG
Ga0318498_100724641	3300031778	Soil	IGNFVGLGTVPGMRACRAGDFKPFDTKTTGYEDNVVSWPSVEPAADYTAISTLAFALGAA
Ga0318498_102249942	3300031778	Soil	GPSSPDNFVGLGTVSGMRACGYGSYGPFNNGAAGYEDNVVSWPSVEPASDYSAISLLAFGYGAAGVG
Ga0318552_105858681	3300031782	Soil	GTVSGMRACSAGSYRLFDTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHG
Ga0318548_102044411	3300031793	Soil	DGPSSPDNFVGLGTVSGMRACGYGSYGPFNNGAAGYEDNVVSWPSVEPASDYSAISLLAFGYGAAGVG
Ga0318550_100473454	3300031797	Soil	AGLGTVTGMRACHTGSYRLDNSPAAAYEDNVVSWPSVEPALDYSAISLLAFALAAQGSG
Ga0318565_100052705	3300031799	Soil	LGTVTGMRACSAGAYQLFNSKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG
Ga0318565_101824132	3300031799	Soil	SATGNFTGLATVPEMRACGHGSYGAFNNATVSYEDNVVSWPSVEPAADYSAISLLAFASGTAGLG
Ga0318497_100441051	3300031805	Soil	TVDGPSATGNFTGLATVPEMRACGHGSYGAFNNATVSYEDNVVSWPSVEPAADYSAISLLAFASGTAGLG
Ga0318564_101294703	3300031831	Soil	LGTVSGMRACSAGSYKPFNTKTAAYEDNVVSWPSVEPAADYSANSLLAFALAAQGRG
Ga0318511_104404631	3300031845	Soil	TTDGPSNLGNFVGLGTVTGMRACRAGSFKPFNTKTTGYEDNVVSWPSVEPAADYTANSTLAFALAAAS
Ga0318544_101124121	3300031880	Soil	VPEMRACGHGSYGAFNNATVSYEDNVVSWPSVEPAADYSAISLLAFASGTAGLG
Ga0318520_101842802	3300031897	Soil	TVPGMRACRAGDFKPFDTKTTGYEDNVVSWPSVEPAADYTAISTLAFALGAAG
Ga0318520_110067331	3300031897	Soil	VGLGTVSGMRACGYGSYGPFNNGAAGYEDNVVSWPSVEPAADYSAISLLAFGYGAAGVG
Ga0308175_1005488641	3300031938	Soil	DNFQGLGSVDGMRACSAGTFAPFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALGADQGTGLG
Ga0310916_101341033	3300031942	Soil	TTDGPSSIGNFVGLGTVPGMRACSAGRFAPFNTTTAGYEDNVVSWPSVEPAADYSAASLFAFALGSGIG
Ga0310913_102199051	3300031945	Soil	VPGMRACGHGSYGAFNNATVSYEDNVVSWPSVEPAADYSAISLLAFASGTAGLG
Ga0310913_108398702	3300031945	Soil	SGMRACSAGSYKPFNTKTAAYEDNVVSWPSVEPAADYSANSLLAFALAAQGRG
Ga0306926_103953981	3300031954	Soil	SDGPSGIGNFVGLGTVPGMRACRAGDFKPFDTKTTGYEDNVVSWPSVEPAADYTAISTLAFALGAAG
Ga0318531_104751131	3300031981	Soil	SGNFTGLATVPGMRACGHGSYGAFDNATAAYEDNVVSWPSVEPASDYSAISLLAFAFGTAGLG
Ga0318563_106617822	3300032009	Soil	PSSPGNFSGLGTVSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG
Ga0318505_102703762	3300032060	Soil	PIQVGATSDGPSGIGNFVGLGTVPGMRACRAGDFKPFDTKTTGYEDNVVSWPSVEPAADYTAISTLAFALGAAG
Ga0318504_103494992	3300032063	Soil	PSSPDNFVGLGTVSGMRACGYGSYGPFNNGAAGYEDNVVSWPSVEPASDYSAISLLAFGYGAAGVG
Ga0306924_101841811	3300032076	Soil	LGTVTGMRACRAGSFKPFNTKTTGYEDNVVSWPSVEPAADYTANSTLAFALAAAS
Ga0306924_114180061	3300032076	Soil	SSPDNFVGLGTVSGMRACGYGSYGPFNNAAAGYEDNVVSWPSVEPASDYSAISLLAFGYGAAGVG
Ga0318518_103748841	3300032090	Soil	GMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG
Ga0311301_130396322	3300032160	Peatlands Soil	SGLGTVPGMRACSAGNFAPFNTSTASYEDNVVSWPSVEPAADYTAASLFAFALGQAGLG
Ga0307472_1000341626	3300032205	Hardwood Forest Soil	SAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRA
Ga0306920_1006131882	3300032261	Soil	TSDGPSGIGNFVGLGTVKGMRACRAGHFKPFNTKTTGYEDNVVSWPSVEPAADYTAVSTLAFALAAH
Ga0335085_118823601	3300032770	Soil	SPDHFSGLGTVRGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHT
Ga0335078_119581042	3300032805	Soil	PSSPDNFSGLGTVSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFVLAAQDRG
Ga0335080_102099081	3300032828	Soil	RACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG
Ga0335080_113997061	3300032828	Soil	RACSAGSYKLFNTRTAAYEDNVVSWPSVEPAADYTANSLLAFAFAAHDRG
Ga0335080_117102601	3300032828	Soil	CSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHT
Ga0335081_101281506	3300032892	Soil	GTVSGMRACSAGSYKLFNTKAAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDRG
Ga0318519_105941993	3300033290	Soil	PSPEKLPGLGTVSGMRACSAGSYKLFNTKTAAYEDNVVSWPSVEPAADYTANSLLAFALAAQDHG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097966

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences