Metagenome / Metatranscriptome Family F097954

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097954
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	58 residues
Representative Sequence	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWYGAITVNPEQVFED
Number of Associated Samples	73
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.65 %
% of genes near scaffold ends (potentially truncated)	24.04 %
% of genes from short scaffolds (< 2000 bps)	70.19 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.577 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.423 % of family members)
Environment Ontology (ENVO)	Unclassified (38.462 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.16% β-sheet: 0.00% Coil/Unstructured: 48.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00571	CBS	9.62
PF04972	BON	8.65
PF05494	MlaC	3.85
PF13561	adh_short_C2	2.88
PF00072	Response_reg	0.96
PF13847	Methyltransf_31	0.96
PF05239	PRC	0.96
PF05598	DUF772	0.96
PF00596	Aldolase_II	0.96
PF12834	Phage_int_SAM_2	0.96
PF04020	Phage_holin_4_2	0.96
PF03992	ABM	0.96
PF00589	Phage_integrase	0.96
PF00528	BPD_transp_1	0.96
PF00664	ABC_membrane	0.96
PF00330	Aconitase	0.96
PF13424	TPR_12	0.96
PF14701	hDGE_amylase	0.96
PF05231	MASE1	0.96
PF12973	Cupin_7	0.96
PF00924	MS_channel	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	3.85
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.96
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.96
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.96
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.96
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
All Organisms	root	All Organisms	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
cellular organisms	root	All Organisms → cellular organisms	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.65 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	7.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.77 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.65 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	7.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.65 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	8.65 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	7.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.65 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100203887	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300005176\|Ga0066679_11050221	Not Available	505	Open in IMG/M
3300005439\|Ga0070711_101027622	Not Available	708	Open in IMG/M
3300005440\|Ga0070705_101120876	Not Available	645	Open in IMG/M
3300005445\|Ga0070708_100171743	All Organisms → cellular organisms → Bacteria	2024	Open in IMG/M
3300005445\|Ga0070708_100891055	Not Available	835	Open in IMG/M
3300005467\|Ga0070706_100066719	All Organisms → cellular organisms → Bacteria → Proteobacteria	3328	Open in IMG/M
3300005467\|Ga0070706_100202269	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1855	Open in IMG/M
3300005467\|Ga0070706_100283395	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300005468\|Ga0070707_100991472	Not Available	805	Open in IMG/M
3300005471\|Ga0070698_100258138	Not Available	1675	Open in IMG/M
3300005471\|Ga0070698_101165793	Not Available	719	Open in IMG/M
3300005536\|Ga0070697_100012436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6669	Open in IMG/M
3300005536\|Ga0070697_100019878	All Organisms → cellular organisms → Bacteria	5308	Open in IMG/M
3300005536\|Ga0070697_100044659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3589	Open in IMG/M
3300005536\|Ga0070697_100325886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1323	Open in IMG/M
3300005557\|Ga0066704_10946320	Not Available	532	Open in IMG/M
3300005586\|Ga0066691_10647671	Not Available	627	Open in IMG/M
3300006173\|Ga0070716_100006724	All Organisms → cellular organisms → Bacteria	5630	Open in IMG/M
3300006237\|Ga0097621_100725045	Not Available	917	Open in IMG/M
3300007255\|Ga0099791_10207318	Not Available	925	Open in IMG/M
3300007258\|Ga0099793_10030968	All Organisms → cellular organisms → Bacteria	2272	Open in IMG/M
3300007265\|Ga0099794_10090689	Not Available	1516	Open in IMG/M
3300007788\|Ga0099795_10221146	Not Available	806	Open in IMG/M
3300009038\|Ga0099829_10003063	All Organisms → cellular organisms → Bacteria → Proteobacteria	9737	Open in IMG/M
3300009088\|Ga0099830_10094936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2216	Open in IMG/M
3300009089\|Ga0099828_10037212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3964	Open in IMG/M
3300009090\|Ga0099827_10148455	Not Available	1917	Open in IMG/M
3300009090\|Ga0099827_10979033	Not Available	733	Open in IMG/M
3300009143\|Ga0099792_10114673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1437	Open in IMG/M
3300009147\|Ga0114129_10163373	Not Available	3040	Open in IMG/M
3300009171\|Ga0105101_10275867	Not Available	813	Open in IMG/M
3300011120\|Ga0150983_13173203	Not Available	880	Open in IMG/M
3300011269\|Ga0137392_10038809	All Organisms → cellular organisms → Bacteria	3513	Open in IMG/M
3300011269\|Ga0137392_10114724	Not Available	2141	Open in IMG/M
3300011269\|Ga0137392_11502757	Not Available	532	Open in IMG/M
3300011270\|Ga0137391_10573455	Not Available	949	Open in IMG/M
3300011270\|Ga0137391_10696928	Not Available	844	Open in IMG/M
3300011271\|Ga0137393_11018676	Not Available	705	Open in IMG/M
3300011271\|Ga0137393_11485880	Not Available	567	Open in IMG/M
3300012096\|Ga0137389_10124755	Not Available	2079	Open in IMG/M
3300012199\|Ga0137383_10104919	Not Available	2054	Open in IMG/M
3300012200\|Ga0137382_10762208	Not Available	695	Open in IMG/M
3300012205\|Ga0137362_10171235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1863	Open in IMG/M
3300012208\|Ga0137376_10050666	All Organisms → cellular organisms → Bacteria	3394	Open in IMG/M
3300012357\|Ga0137384_10287898	Not Available	1368	Open in IMG/M
3300012361\|Ga0137360_11075599	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012362\|Ga0137361_11273641	Not Available	659	Open in IMG/M
3300012363\|Ga0137390_10072486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3375	Open in IMG/M
3300012363\|Ga0137390_10621671	Not Available	1047	Open in IMG/M
3300012363\|Ga0137390_11722964	Not Available	560	Open in IMG/M
3300012363\|Ga0137390_11736499	Not Available	557	Open in IMG/M
3300012685\|Ga0137397_10726884	Not Available	737	Open in IMG/M
3300012917\|Ga0137395_10190627	Not Available	1423	Open in IMG/M
3300012922\|Ga0137394_10504769	Not Available	1027	Open in IMG/M
3300012923\|Ga0137359_10063777	All Organisms → cellular organisms → Bacteria	3214	Open in IMG/M
3300012923\|Ga0137359_11546146	Not Available	551	Open in IMG/M
3300012929\|Ga0137404_12161221	Not Available	520	Open in IMG/M
3300014884\|Ga0180104_1003541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3298	Open in IMG/M
3300017927\|Ga0187824_10154102	Not Available	763	Open in IMG/M
3300017930\|Ga0187825_10095885	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1024	Open in IMG/M
3300017994\|Ga0187822_10251149	Not Available	608	Open in IMG/M
3300020199\|Ga0179592_10365782	Not Available	633	Open in IMG/M
3300020579\|Ga0210407_10019168	All Organisms → cellular organisms → Bacteria → Proteobacteria	5080	Open in IMG/M
3300021088\|Ga0210404_10602295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300021088\|Ga0210404_10705078	Not Available	575	Open in IMG/M
3300021178\|Ga0210408_10455124	Not Available	1018	Open in IMG/M
3300021404\|Ga0210389_10707515	Not Available	789	Open in IMG/M
3300021432\|Ga0210384_10021747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6149	Open in IMG/M
3300021432\|Ga0210384_10179572	Not Available	1902	Open in IMG/M
3300021432\|Ga0210384_11780357	Not Available	521	Open in IMG/M
3300022525\|Ga0242656_1042486	Not Available	766	Open in IMG/M
3300022531\|Ga0242660_1100813	Not Available	706	Open in IMG/M
3300025910\|Ga0207684_10215874	All Organisms → cellular organisms → Bacteria	1655	Open in IMG/M
3300025910\|Ga0207684_10235677	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300025910\|Ga0207684_10519288	Not Available	1020	Open in IMG/M
3300025916\|Ga0207663_10391678	Not Available	1060	Open in IMG/M
3300025922\|Ga0207646_10042677	All Organisms → cellular organisms → Bacteria	4074	Open in IMG/M
3300025922\|Ga0207646_10537750	Not Available	1051	Open in IMG/M
3300026482\|Ga0257172_1005569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1900	Open in IMG/M
3300026482\|Ga0257172_1013875	Not Available	1364	Open in IMG/M
3300026499\|Ga0257181_1009132	Not Available	1288	Open in IMG/M
3300027671\|Ga0209588_1085307	Not Available	1019	Open in IMG/M
3300027846\|Ga0209180_10006702	All Organisms → cellular organisms → Bacteria → Proteobacteria	5856	Open in IMG/M
3300027846\|Ga0209180_10795485	Not Available	507	Open in IMG/M
3300027862\|Ga0209701_10035632	All Organisms → cellular organisms → Bacteria	3221	Open in IMG/M
3300027882\|Ga0209590_10109795	Not Available	1661	Open in IMG/M
3300028047\|Ga0209526_10018705	All Organisms → cellular organisms → Bacteria	4818	Open in IMG/M
3300028047\|Ga0209526_10064832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2572	Open in IMG/M
3300031716\|Ga0310813_11481090	Not Available	631	Open in IMG/M
3300031720\|Ga0307469_10034851	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2978	Open in IMG/M
3300031720\|Ga0307469_10933261	Not Available	806	Open in IMG/M
3300031740\|Ga0307468_100833022	Not Available	791	Open in IMG/M
3300031820\|Ga0307473_10162008	Not Available	1286	Open in IMG/M
3300031820\|Ga0307473_10546595	Not Available	790	Open in IMG/M
3300031820\|Ga0307473_10870666	Not Available	648	Open in IMG/M
3300031962\|Ga0307479_10338740	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1487	Open in IMG/M
3300032180\|Ga0307471_100065703	All Organisms → cellular organisms → Bacteria	3094	Open in IMG/M
3300032180\|Ga0307471_100733384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1153	Open in IMG/M
3300032180\|Ga0307471_102436665	Not Available	661	Open in IMG/M
3300032180\|Ga0307471_103200427	Not Available	580	Open in IMG/M
3300032205\|Ga0307472_100006167	All Organisms → cellular organisms → Bacteria → Proteobacteria	5617	Open in IMG/M
3300033412\|Ga0310810_10000316	All Organisms → cellular organisms → Bacteria	51021	Open in IMG/M
3300033433\|Ga0326726_10064446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3226	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.08%
Host-Associated	Host-Associated	1.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.27%
Aquatic	Environmental → Aquatic	4.81%
Plants	Host-Associated → Plants	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.31%
Freshwater	Environmental → Aquatic → Freshwater	3.85%
Sediment	Environmental → Aquatic → Sediment	0.96%
Peat	Environmental → Terrestrial → Peat	0.96%
Roots	Host-Associated → Plants → Roots	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.27%
Loam	Environmental → Terrestrial → Soil → Loam	24.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	20.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1002038872	3300002245	Forest Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPVGVWSGAITVNPEQVFED*
Ga0066679_110502213	3300005176	Soil	RLIVFVIGIVTAILGCATKEVADDQSLHVRVASYSAPASVWYGAITVNPEQVFED*
Ga0070711_1010276223	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVIGIITAILGCATKEVADGQSLHVRVASYSAPASVWYGAITVNPEQVFED*
Ga0070705_1011208762	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKTGLIVFVIGIVTAILGCATKEVEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED*
Ga0070708_1001717432	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKTGLIVFVIGIVTAILGCATREVEDGQSLHVRLASYSAPASVWYGAITVNPEQVFED*
Ga0070708_1008910553	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYGAPASVWYGAITVNPEQVFED*
Ga0070706_1000667194	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVLGIVTAILGCATKEGADGQSLHVRVASYSAPVGVWYGAITVNPEQVFED*
Ga0070706_1002022692	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKTGLIVFVIGIVTAILGCATKEVGDGQSLHVRLASYSAPASVWYGAITVNPEQVFED*
Ga0070706_1002833952	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRMIVFVIGIVTAFLGCATKELLDDPFSYVRVARHSSPASAQDSRWNGAITVNPEQVFEN*
Ga0070707_1009914723	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	EGGLVMKTGLIVFVIGIVTAILGCATKEVEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED*
Ga0070698_1002581383	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MVMKTRMIVFVIGIVTAVLGGATKEVQDDQLPVRVASYSAPSSAQDSGWYGAITVSPEQIFED*
Ga0070698_1011657933	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVIGIVTAILGCATKEVEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED*
Ga0070697_1000124363	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LVIKTPLIVFVIGIVTAILGCATKQAAGGQSLHVRLASYSAPVGMWYGAITVNPQQVFED
Ga0070697_1000198784	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVIGIITAILGCATKEVADGQSLHVRVASYSAPAGVGYGAITVNPEQVFED*
Ga0070697_1000446592	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRMIVFVIGIVTAFLGCATKELLDDPFSYVRVARHSSPASAQDSRWNGAITVSPEQVFEN*
Ga0070697_1003258862	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRTGLIVFVIGIVTAILGCATKEGEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED*
Ga0066704_109463201	3300005557	Soil	MKTRLIVFVIGIVTAILGCATKAVADGQSLHVRVASYSAPVGVWYGAITVNPEEVFED*
Ga0066691_106476711	3300005586	Soil	MKTRLIVFVIGIVTAILGCATKEVEDGQSLHVRVASYGAPASVWYGAITVNPEQVFED*
Ga0070716_1000067244	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVIGIITAILGCATKEVADGQSLHVRVASYSAPAGVWYGAITVNPEQVFED*
Ga0097621_1007250453	3300006237	Miscanthus Rhizosphere	MKTRLIVFVIGIVTVILGCATTEVEDGQSLRVRVASYGAPASVGYGAITVNPEQVFED*
Ga0099791_102073182	3300007255	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADQSLHVRVASYSAPLGVWYGAITVNPEQVFAD*
Ga0099793_100309683	3300007258	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWYGAITVNPEQVFED*
Ga0099794_100906892	3300007265	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADQSLHVRVASYSAPVGVWYGAITVNPEQVFAD*
Ga0099795_102211461	3300007788	Vadose Zone Soil	MVMKPRMIVFAIGVVTAFLGCATKEVQDDQFLHVRVASNSAPASVWYGAITVNPEQVFED
Ga0099829_100030634	3300009038	Vadose Zone Soil	MAMKTRMIVFVIGIATVVLGCVTKEVQDDQFLHVRLASYGAPASVWYGAITVNPGQVFED
Ga0099830_100949364	3300009088	Vadose Zone Soil	MKTRLIVFVIGIVTAIFGCATKEVADGQSLHVRVASYSAPASVWYGAITVNPEQVFED*
Ga0099828_100372123	3300009089	Vadose Zone Soil	MAMKTRMIVFVIGIATVVLGCVTKEVQDDQFLHVRLASYGAPASVWYGAITVNPEQVFED
Ga0099827_101484552	3300009090	Vadose Zone Soil	MKTRMIVFVIGIVTAFLGCATMEVQDDQFLHVRVAGYNSPASVWYGAITVNPEQVFEN*
Ga0099827_109790331	3300009090	Vadose Zone Soil	MKTWLIVFVIGIVTAILGCATKEVVEDGQSLHVRVASYGAPASVWYGAITVNPEQVFED*
Ga0099792_101146734	3300009143	Vadose Zone Soil	ADEGGLVMKTRLIVFVIGIVTAILGCATKAVEDGQSLHVRVASYGAPASVWYGAITVNPEQVFED*
Ga0114129_101633734	3300009147	Populus Rhizosphere	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPSGVWYGAITVNPEQVFED*
Ga0105101_102758671	3300009171	Freshwater Sediment	VDAGGSVLKTRQTRFVIGIVTAVLGCATKEVEDGRSLHVRVASYGAPASASNSGWYYPGAITVNPGQVFEN*
Ga0150983_131732031	3300011120	Forest Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWSGAITANPEQVFED*
Ga0137392_100388092	3300011269	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKAVEDGQSLHVRVASYGAPASVWYGAITVNPEQVFED*
Ga0137392_101147242	3300011269	Vadose Zone Soil	MVMKTWMIVFVIGIVTAVLGCATKEVQDDQLHVRVASYSAPSSAQDSGWYGAITVSPEQIFGD*
Ga0137392_115027571	3300011269	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADQSLHVRVASYSAPARVWYGAITVNPEQVFED*
Ga0137391_105734552	3300011270	Vadose Zone Soil	MIMKTRLVVFVIGIATAVLGCATQELHDDQLLHVRVASYGSPPTAQDSRWYGAITVNPEQVFED*
Ga0137391_106969281	3300011270	Vadose Zone Soil	MKTRMIVFAIGVVTAFLGCATKEVRDDQFLHVRVASYSSPASVWYGAITVNPEQVFED*
Ga0137393_110186762	3300011271	Vadose Zone Soil	MKTWLIVFVIGIVTAILGCATKEVEDGQSLHVRVASYSAPARVWYGAITVNPEQVFED*
Ga0137393_114858802	3300011271	Vadose Zone Soil	FLTEGGVVMKTRMIVFVIGIVTAFLGCATKEVQDDQLHVRVASYSAPSSAQDSGWYGAITVSPEQIFGD*
Ga0137389_101247552	3300012096	Vadose Zone Soil	MKTWLIVFVIGIVTAILGCATKEVEDGQSLHVRVASYSAPASVWYGAITVNPEQVFED*
Ga0137383_101049192	3300012199	Vadose Zone Soil	MKTGLIVFVIGIVTAILGCATREVEHGQSLHVRLASYSAPASVWYGAITVNPEQVFED*
Ga0137382_107622083	3300012200	Vadose Zone Soil	VIGIVTVILGCATKEVADGQSLHVRVASYSAPVGVWYGAITVNPEQVFED*
Ga0137362_101712352	3300012205	Vadose Zone Soil	MVMKPRMIVFAIGVVTAFLGCATKEVQDDQFLHVRVASYSAPASVWYGAITVNPEQVFED
Ga0137376_100506664	3300012208	Vadose Zone Soil	MKTRLIVFVIGIVTVILGCATKEVADGQSLHVRVASYSAPVGVWYGAITVNPEQVFED*
Ga0137384_102878982	3300012357	Vadose Zone Soil	MKTGLIVFVIGIVTAILGCATREVEHGQSLHVRLASYSAPASVWYGAITV
Ga0137360_110755993	3300012361	Vadose Zone Soil	MVMKPRMIVFAIGVVTAFLGCATKEVQDDQFLHVRVASYSAPASVWYGAI
Ga0137361_112736412	3300012362	Vadose Zone Soil	FVIGIVTAILGCATKEVEDGQSLHVRVASYSAPAGVWYGAITVNPEQVFED*
Ga0137390_100724862	3300012363	Vadose Zone Soil	MVMKTWMIVFVIGIVTAVLGCATKEVQDDQLHVRVASYSAPSSAQDSGWYGAITVSPEQIFED*
Ga0137390_106216711	3300012363	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADQSLHVRVASYSAPVGVWYGAITVNP
Ga0137390_117229641	3300012363	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADQSLHVRVASYSAPVGVWYGAITVNPEQV
Ga0137390_117364991	3300012363	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVSDGQSLHVRVASYSAPASVWYGAITVNPE
Ga0137397_107268841	3300012685	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPVGVWYGAITVNPEQVFED*
Ga0137395_101906272	3300012917	Vadose Zone Soil	MVMKTRVIVFVIGIVTAVLGCATKEVQDDQLHVRVASYSAPSSAQDSGWYGAITVSPEQIFED*
Ga0137394_105047692	3300012922	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWYGAITV
Ga0137359_100637773	3300012923	Vadose Zone Soil	MVMKPRMIVFAIGVVTAFLGCATKEVQDDQFLHVRVASYSAPATVWYGAITVNPEQVFED
Ga0137359_115461461	3300012923	Vadose Zone Soil	TRLIVFVIGIVTAILGCATKEVADQSLHVRVASYSAPVGVWYGAITVNPEQVFED*
Ga0137404_121612213	3300012929	Vadose Zone Soil	VFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWYGAITVNPEQVFED*
Ga0180104_10035414	3300014884	Soil	LILKTRLIVFVIGIVTAILGCATKEVEDGQSLQVRVANYGAPASVWYGAIIVNPEQVFEV
Ga0187824_101541022	3300017927	Freshwater Sediment	MQTRLLVLVIGIVTAILGCATQEVEDGQSLHVRVASYSAPASVWYGAITVNPDQVFED
Ga0187825_100958852	3300017930	Freshwater Sediment	MQTRLLVFVIGIVTAILGCATQEVEDGQSLHVRVASDSAPASVWYGAITVNPDQVFED
Ga0187822_102511492	3300017994	Freshwater Sediment	ADEGGLVMQTRLLVFVIGIVTAILGCATQEVEDGQSLHVRVASDSAPASVWYGAITVNPDQVFED
Ga0179592_103657821	3300020199	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPVGVWYGAITVNPEQVFED
Ga0210407_100191681	3300020579	Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWYGAITVNPEQVFED
Ga0210404_106022951	3300021088	Soil	MKTGLIVFVIGIVTAVLGCATKEVSDGQPLHVRLASYSAPASVWYGAITVNPEQVFED
Ga0210404_107050781	3300021088	Soil	VFVIGIVTAILGCATKEVADGQSLHLRVASYSAPASVWSGAITVNPEQVFED
Ga0210408_104551241	3300021178	Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWSGAITANP
Ga0210389_107075152	3300021404	Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWSGAITVNPEQVFED
Ga0210384_1002174711	3300021432	Soil	MVMSTRMIVFVIGIVTAVLGCATRQVQDDQSLHGRVASYRSPASSWYGAITVNPEQVFEN
Ga0210384_101795721	3300021432	Soil	MKTWLIVFVIGIITAILGCATKEVADGQSLHVRVASYSAPAGVWYEAITVNPEQV
Ga0210384_117803571	3300021432	Soil	VFVIGIVTAILGCATKEVADGQSLHVRVASYSAPASVWSGAITVNPEQVFED
Ga0242656_10424861	3300022525	Soil	MKTRLIVFMIGIVTAILGCATKEVADGQSLHLRVASYSAPASVWSGAITVNPEQVFED
Ga0242660_11008131	3300022531	Soil	MKTGLIVFVIGIVTAVLGCATKEVSDGQSLHVRLASYSAPASVWYGAITVNPEQVFED
Ga0207684_102158744	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKTGLIVFVIGIVTAILGCATREVEDGQSLHVRLASYSAPASVWYGAITVNPEQVFED
Ga0207684_102356772	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYGAPASVWYGAITVNPEQVFED
Ga0207684_105192881	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVLGIVTAILGCATKEGADGQSLHVRVASYSAPVGVWYGAITVNPVQVFED
Ga0207663_103916783	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVIGIITAILGCATKEVADGQSLHVRLASYSAPASVGYGAITVNPEQVFED
Ga0207646_100426775	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRLIVFVLGIVTAILGCATKEGADGQSLHVRVASYSAPVGVWYGAITVNPEQVFED
Ga0207646_105377501	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKTRMIVFVIGIVTAFLGCATKELLDDPFSYVRVARHSSPASAQDSRWTGAITVNPEQVFEN
Ga0257172_10055693	3300026482	Soil	VDICCVVADEGGLVMKTWLIVFVIGIVTAILGCATKEVEDGQSLHVRVASYSAPASVWYGAITVNPEQVFED
Ga0257172_10138751	3300026482	Soil	MKTWMIVFVIGIVTAVLGCATKEVQDDQLHVRVASYSAPSSAQDSGWYGAITVSPEQIFE
Ga0257181_10091322	3300026499	Soil	MKTRLIVFVIGIVTAILGCATKAVEDGQSLHVRVASYGAPASVWYGAITVNPEQVFED
Ga0209588_10853073	3300027671	Vadose Zone Soil	MKTRLIVFVIGIVTAILGCATKEVADQSLHVRVASYSAPVGVWYGAITVNPEQVFAD
Ga0209180_100067025	3300027846	Vadose Zone Soil	MKTRMIVFVIGIATVVLGCVTKEVQDDQFLHVRLASYGAPASVWYGAITVNPGQVFED
Ga0209180_107954851	3300027846	Vadose Zone Soil	TWLIVFVIGIVTAILGCATKEGEDGQSLHVRVASYSAPASVWYGAITVNPEQVFED
Ga0209701_100356325	3300027862	Vadose Zone Soil	MKTRLIVFVIGIVTAIFGCATKEVADGQSLHVRVASYSAPASVWYGAITVNPEQVFED
Ga0209590_101097951	3300027882	Vadose Zone Soil	MKTRMIVFVIGIVTAFLGCATMEVQDDQFLHVRVAGYNSPASVWYGAITVNPEQVFEN
Ga0209526_100187054	3300028047	Forest Soil	MKTWLIVFVIGIITAILGCATKEVADGQSLHVRVASYSAPAGVWYGAITVNPEQVFED
Ga0209526_100648323	3300028047	Forest Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHVRVASYSAPVGVWSGAITVNPEQVFED
Ga0310813_114810902	3300031716	Soil	MKTRLIVIVIGIVTAILGYATKEVEDGQFLHVRVASDSAPASMWYGAITVNPEQMFDD
Ga0307469_100348513	3300031720	Hardwood Forest Soil	MRTGLIVFVIGIVTAILGCATKEGEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED
Ga0307469_109332612	3300031720	Hardwood Forest Soil	MKTRLIVFVIGIVTAILGCATKEVADGQSLHIRLASYSAPVGVWSGAITVNPEQVFED
Ga0307468_1008330221	3300031740	Hardwood Forest Soil	MKTGLIVFVIGIVTAILGCATKEVEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED
Ga0307473_101620081	3300031820	Hardwood Forest Soil	MKTRMIVFVIGLVTAVLGCATKAVQDDQFHLRAASYSAPSSAEDSGWYGAITVSPEQIFE
Ga0307473_105465953	3300031820	Hardwood Forest Soil	TGLIVFVIGIVTAILGCATKEGEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED
Ga0307473_108706661	3300031820	Hardwood Forest Soil	MKTRLIVFGVGIVTAIFGCATKEVADGQSLHVRVASYSAPASVWYGA
Ga0307479_103387404	3300031962	Hardwood Forest Soil	MKTRLIVFVLGIVTAILGCATKEGADGQSLHVRVASYSAPVDVWYGAITVNPEQVFED
Ga0307471_1000657033	3300032180	Hardwood Forest Soil	MKTGLIVFVIGIVTAILGCATKEGEDGQSLHVRLASYSAPASAWYGAITVNPEQVFED
Ga0307471_1007333842	3300032180	Hardwood Forest Soil	DLVIKTPLIVFVIGIVTAILGCATKEVAGGQSLHVRLASYSAPVGAWYGAITVNPQQVFE
Ga0307471_1024366653	3300032180	Hardwood Forest Soil	MKTRLIVFVIGIVTTILGCATKEVADGQSLHIRLASYSAPVGVWSGAITVNPEQVFED
Ga0307471_1032004271	3300032180	Hardwood Forest Soil	MVMNTRMIVFVIGIVTAVLGCATREVQDDQSLHVRVASYRSPASAQVSGWYGAITVNPEQVFEN
Ga0307472_1000061671	3300032205	Hardwood Forest Soil	IKTPLIVFVIGIVTAILGCATKQAAGGQSLHVRLASYSAPVAMWYGAITVNPQQVFED
Ga0310810_100003168	3300033412	Soil	MKTRLIVIVIGIVTAILGYATKEVEDGQFLHVRVASDSAPASMWYGAITVNPEQVFDD
Ga0326726_100644464	3300033433	Peat Soil	MKTRLIVFVIGIVTAILGCATKEVEDGQSLHVRVASYSAPASVWYGAITVNPAQVFED

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097954

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences