NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F097877

Metagenome / Metatranscriptome Family F097877

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F097877
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 104 residues
Representative Sequence MLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLTTGALGLDSFARKLRPA
Number of Associated Samples 91
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 45.19 %
% of genes near scaffold ends (potentially truncated) 25.96 %
% of genes from short scaffolds (< 2000 bps) 83.65 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.84

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (80.769 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(11.539 % of family members)
Environment Ontology (ENVO) Unclassified
(27.885 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(42.308 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.53%    β-sheet: 38.35%    Coil/Unstructured: 51.13%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.84
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
b.55.1.1: PH domain-liked1eaza_1eaz0.73
b.55.1.8: PH domain-liked1zsqa11zsq0.72
b.55.1.1: PH domain-liked1u5ea11u5e0.71
b.55.1.1: PH domain-liked1v5ma11v5m0.71
b.55.1.2: PH domain-liked1wvha11wvh0.71

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF00196GerE 54.81
PF13185GAF_2 4.81
PF02518HATPase_c 2.88
PF09364XFP_N 0.96
PF07730HisKA_3 0.96
PF08240ADH_N 0.96
PF13419HAD_2 0.96
PF13607Succ_CoA_lig 0.96
PF00702Hydrolase 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 0.96
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 0.96
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.96
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 0.96

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.77 %
UnclassifiedrootN/A19.23 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908039|B3_v_NODE_18112_len_1006_cov_6_401590Not Available1056Open in IMG/M
2166559005|cont_contig83161All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium649Open in IMG/M
2228664022|INPgaii200_c0682629All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium564Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101346050All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium716Open in IMG/M
3300001534|A15PFW1_10247231Not Available739Open in IMG/M
3300001536|A1565W1_10435513All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1410Open in IMG/M
3300002906|JGI25614J43888_10145945All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium628Open in IMG/M
3300004081|Ga0063454_100221339All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1100Open in IMG/M
3300004153|Ga0063455_100022116All Organisms → cellular organisms → Bacteria1751Open in IMG/M
3300005175|Ga0066673_10324818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium898Open in IMG/M
3300005179|Ga0066684_10230725All Organisms → cellular organisms → Bacteria1208Open in IMG/M
3300005179|Ga0066684_10621878Not Available726Open in IMG/M
3300005327|Ga0070658_11519880Not Available580Open in IMG/M
3300005336|Ga0070680_100858267All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300005339|Ga0070660_101726500Not Available533Open in IMG/M
3300005366|Ga0070659_100931892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium760Open in IMG/M
3300005366|Ga0070659_101794448Not Available549Open in IMG/M
3300005435|Ga0070714_100084903All Organisms → cellular organisms → Bacteria2764Open in IMG/M
3300005436|Ga0070713_100145402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2104Open in IMG/M
3300005436|Ga0070713_100298365All Organisms → cellular organisms → Bacteria1483Open in IMG/M
3300005444|Ga0070694_101698109Not Available537Open in IMG/M
3300005445|Ga0070708_100714223All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium943Open in IMG/M
3300005454|Ga0066687_10622436All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium641Open in IMG/M
3300005458|Ga0070681_10007984All Organisms → cellular organisms → Bacteria10358Open in IMG/M
3300005549|Ga0070704_102127532All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium521Open in IMG/M
3300005556|Ga0066707_10585404All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium715Open in IMG/M
3300005557|Ga0066704_11039731All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium505Open in IMG/M
3300005563|Ga0068855_100334299All Organisms → cellular organisms → Bacteria1672Open in IMG/M
3300005564|Ga0070664_101372881All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria668Open in IMG/M
3300005575|Ga0066702_10506115All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium734Open in IMG/M
3300005587|Ga0066654_10718076Not Available561Open in IMG/M
3300006028|Ga0070717_11165147All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium701Open in IMG/M
3300006028|Ga0070717_11615836Not Available587Open in IMG/M
3300006028|Ga0070717_12136471Not Available503Open in IMG/M
3300006173|Ga0070716_101424320All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium564Open in IMG/M
3300006175|Ga0070712_100566006All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium959Open in IMG/M
3300006638|Ga0075522_10075876All Organisms → cellular organisms → Bacteria1870Open in IMG/M
3300006953|Ga0074063_12543300Not Available525Open in IMG/M
3300007822|Ga0104325_101753All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1026Open in IMG/M
3300009038|Ga0099829_11093432All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium661Open in IMG/M
3300010335|Ga0134063_10767696All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium503Open in IMG/M
3300010854|Ga0126360_1045236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1567Open in IMG/M
3300010861|Ga0126349_1103101All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium857Open in IMG/M
3300011987|Ga0120164_1023158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1004Open in IMG/M
3300012003|Ga0120163_1000507All Organisms → cellular organisms → Bacteria28387Open in IMG/M
3300012003|Ga0120163_1013005All Organisms → cellular organisms → Bacteria2751Open in IMG/M
3300012008|Ga0120174_1073383Not Available889Open in IMG/M
3300012096|Ga0137389_10683809All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium882Open in IMG/M
3300012189|Ga0137388_10329843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1403Open in IMG/M
3300012209|Ga0137379_11106129Not Available698Open in IMG/M
3300012212|Ga0150985_117562032Not Available640Open in IMG/M
3300012351|Ga0137386_10751258Not Available700Open in IMG/M
3300012356|Ga0137371_11122918All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium590Open in IMG/M
3300012363|Ga0137390_11609036All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium587Open in IMG/M
3300012469|Ga0150984_116133573All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300012469|Ga0150984_117821162All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales4316Open in IMG/M
3300012469|Ga0150984_123317819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1151Open in IMG/M
3300012951|Ga0164300_10018759All Organisms → cellular organisms → Bacteria2355Open in IMG/M
3300012955|Ga0164298_10071298All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1748Open in IMG/M
3300012961|Ga0164302_10684770Not Available757Open in IMG/M
3300012982|Ga0168317_1038925All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1251Open in IMG/M
3300012989|Ga0164305_12084554All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium519Open in IMG/M
3300013100|Ga0157373_10768031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium709Open in IMG/M
3300013105|Ga0157369_10076596All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3585Open in IMG/M
3300013105|Ga0157369_12089150All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium574Open in IMG/M
3300013427|Ga0120106_1094106All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium521Open in IMG/M
3300013832|Ga0120132_1049903All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium808Open in IMG/M
3300015063|Ga0167649_106325All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1087Open in IMG/M
3300015371|Ga0132258_12219737All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1378Open in IMG/M
3300018468|Ga0066662_10004569All Organisms → cellular organisms → Bacteria6727Open in IMG/M
3300019887|Ga0193729_1068088All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1411Open in IMG/M
3300019888|Ga0193751_1027597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2704Open in IMG/M
3300021363|Ga0193699_10006535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4203Open in IMG/M
3300021363|Ga0193699_10048787All Organisms → cellular organisms → Bacteria1633Open in IMG/M
3300021363|Ga0193699_10116421All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1087Open in IMG/M
3300021363|Ga0193699_10241308All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium752Open in IMG/M
3300024178|Ga0247694_1007479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1391Open in IMG/M
3300025862|Ga0209483_1136381All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1035Open in IMG/M
3300025912|Ga0207707_10030958All Organisms → cellular organisms → Bacteria4680Open in IMG/M
3300025917|Ga0207660_10505661All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium980Open in IMG/M
3300025919|Ga0207657_11260565Not Available560Open in IMG/M
3300025928|Ga0207700_11748529All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium548Open in IMG/M
3300025939|Ga0207665_11082122All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium639Open in IMG/M
3300025949|Ga0207667_10845692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium909Open in IMG/M
3300026319|Ga0209647_1138143Not Available1067Open in IMG/M
3300026550|Ga0209474_10067129All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2504Open in IMG/M
3300028573|Ga0265334_10015458All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3170Open in IMG/M
3300028653|Ga0265323_10064959All Organisms → cellular organisms → Bacteria1260Open in IMG/M
3300028666|Ga0265336_10078595All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales985Open in IMG/M
3300028755|Ga0307316_10280889All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium608Open in IMG/M
3300028800|Ga0265338_10133106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1959Open in IMG/M
3300030010|Ga0302299_10208582All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1041Open in IMG/M
3300030114|Ga0311333_11775058Not Available536Open in IMG/M
3300030997|Ga0073997_11930200All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium536Open in IMG/M
3300031047|Ga0073995_12173730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium619Open in IMG/M
3300031232|Ga0302323_102785562All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium559Open in IMG/M
3300031235|Ga0265330_10074278All Organisms → cellular organisms → Bacteria1469Open in IMG/M
3300031670|Ga0307374_10018489All Organisms → cellular organisms → Bacteria9033Open in IMG/M
3300031672|Ga0307373_10171178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1630Open in IMG/M
3300031918|Ga0311367_10155080All Organisms → cellular organisms → Bacteria2411Open in IMG/M
3300032829|Ga0335070_10434700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1251Open in IMG/M
3300034195|Ga0370501_0012023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter2400Open in IMG/M
3300034195|Ga0370501_0069003Not Available1152Open in IMG/M
3300034268|Ga0372943_0642089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium698Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.54%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.62%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost7.69%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.73%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere5.77%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere4.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.85%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen3.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.88%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.88%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.88%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere2.88%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.92%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.92%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.92%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.96%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.96%
Weathered Mine TailingsEnvironmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings0.96%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.96%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.96%
SimulatedEngineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated0.96%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908039Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4EnvironmentalOpen in IMG/M
2166559005Simulated microbial communities from Lyon, FranceEngineeredOpen in IMG/M
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001534Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001536Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007822Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010854Boreal forest soil eukaryotic communities from Alaska, USA - W4-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010861Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011987Permafrost microbial communities from Nunavut, Canada - A20_80cm_0MEnvironmentalOpen in IMG/M
3300012003Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25MEnvironmentalOpen in IMG/M
3300012008Permafrost microbial communities from Nunavut, Canada - A39_80cm_12MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012982Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfieldEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013427Permafrost microbial communities from Nunavut, Canada - A15_35cm_18MEnvironmentalOpen in IMG/M
3300013832Permafrost microbial communities from Nunavut, Canada - A3_5cm_0MEnvironmentalOpen in IMG/M
3300015063Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3b, vegetated patch on medial moraine)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300024178Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35EnvironmentalOpen in IMG/M
3300025862Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300028573Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaGHost-AssociatedOpen in IMG/M
3300028653Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaGHost-AssociatedOpen in IMG/M
3300028666Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaGHost-AssociatedOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300030010Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4EnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030997Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031047Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031235Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaGHost-AssociatedOpen in IMG/M
3300031670Soil microbial communities from Risofladan, Vaasa, Finland - OX-3EnvironmentalOpen in IMG/M
3300031672Soil microbial communities from Risofladan, Vaasa, Finland - OX-2EnvironmentalOpen in IMG/M
3300031918III_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300034195Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17EnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
B3_v_008968202124908039SoilMLGLREARRVAWRRQHARRYYVGYVTVTETTVRFAGREDATGIDITLSIPYNAIHKIRVAQNPAEEVVGERGVVLELIEDEPIYVRPIYPSSADLDDFARKLSQA
cont_0161.000055502166559005SimulatedMLGVRDTRRVAWRREHAPQHYVGYVTVTEKSVRLAGTEHATGIEVSLSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLQTGALGLDSFARKLRPA
INPgaii200_068262922228664022SoilMLGIRDTRRVAWRRQHAPQHYVGYVTVTEDSVRLAGTEHHTGIDVALTIPYTAISKVRVGRTDGEEVVGERSVVLELEEDAPILVRPLCAGPLDLDGFARRLSPA
INPhiseqgaiiFebDRAFT_10134605023300000364SoilMLGIRDTRRVAWRRQHAPQHYVGYVTVTEDSVRLAGTEHHTGIDVALTIPYTAISKVRVGRTDGEEVVGERSVVLELEEDAPILVRPLCAGPLDLDGFARRLSPA*
A15PFW1_1024723113300001534PermafrostMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLATGALGLDSFARKLRPT*
A1565W1_1043551323300001536PermafrostMLGVRDTRRVTWRRQHASQHYLGYVTVTDQGVRLAGREHQTGIDVSLSIPHDAIRKVRLALNDREEVVGERSVVLELRDDEPIYVRPICKGPLDLDGFARRLRPN*
JGI25614J43888_1014594513300002906Grasslands SoilMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHDAIRKVRVGRDRGEEVVGEQSVVLELLDDEPIYVRPVGSAPLNLDGFARRLRQN*
Ga0063454_10022133923300004081SoilMLGIREARRVAWRRRHAPQHYVGYVTVTDDGVRLAGTEHHTGIDAALTIPYTAICKVRVGDCDGEDVVGERSVVLELEEDEPILVRPLSTGQLDLDGFARRLRPA*
Ga0063455_10002211623300004153SoilMLGVRDTRRVTWRRKHAPQHYVGYVTVTEESVRLAGREHATGIDASLSIPYGAIRKVRVARDQGEEVVGEQSVVLELREDEPIYVRPLCTGRLDLDGFARKLRRPS*
Ga0066673_1032481833300005175SoilMMLGVRDTRRVAWRRKHAPQHYVGYVTVTEESVRLAGREHATGIDASLSIPYDAIRKVRVARNPGEEVVGERSVVLELREDEPIYVRPLCTGRLDLD
Ga0066684_1023072513300005179SoilMLGVRDTRRVAWRRKHAPQHYVGYVTVTEQSVRLAGREHATGIDASLLIPYDAIRKVRVARDAGEEVVGEQAVVLELREDAPIYVRPLC
Ga0066684_1062187823300005179SoilMLGVRHTRRVAWKRHYALQHYVGYVTVTDDTIRLAGREHATGIDAALTIPYTAITAVRVADAADEEVVGAASVVLELRGDDSICVRPVDAGELDLDAFARRLLPLTV*
Ga0070658_1151988023300005327Corn RhizosphereMLGVRDMRRVAWRREHAPQHYVGYVTVTEKSVRLAGTEHATGIEVSLSIPYDAIRKIRVARYAAEEVVGKRAVVLELREDSPIFVRPLHTGALGLDNFARKLRPA*
Ga0070680_10085826723300005336Corn RhizosphereMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHDAIRKVRIGRDGGEEVVGEQSVVLELHDDEPIYVRPVGSGALNLDGFARRLRQN*
Ga0070660_10172650023300005339Corn RhizosphereMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHNAIRKVRIGRDGGEEVVGEQSVVLELHDDEPIYVRPVGSGALNLDGFARRLRQN*
Ga0070659_10093189223300005366Corn RhizosphereMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHDAIRKVRVGRDGGEEVVGEQSVVLELLDDEPIYVRPVGSGALNLDGFARRLRQN*
Ga0070659_10179444813300005366Corn RhizosphereQHYVGYVTVTEQSVRLAGREHATGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLSTGALALDSFARKLRPA*
Ga0070714_10008490333300005435Agricultural SoilMLGVRDTRRVAWRRRHAPQHYVGYVTVTENSVRLAGTEHHTGIDASLSIPYTAINRIRLGHDNGEEVVGERSVVLELREDDPILVRPLCTGAPDLHGFARKLRPA*
Ga0070713_10014540233300005436Corn, Switchgrass And Miscanthus RhizosphereMLGVLETRQVAWRRQHAQRHYVGYVTVTEHGVRLAGREQATGIDVSLSIPHTAIRQVHVGSTSAETVAGEPTVVLELCDEEPIYVRPLGDGTPDLDSFARKFRSR*
Ga0070713_10029836533300005436Corn, Switchgrass And Miscanthus RhizosphereMLGVRDTRRVAWRRQHAPQHYVGYVTVTDKDVRLAGTEHHTGIDVALSIPNAAIRKVRVGHGTAEEVVGEQSVVLELCEDAPILVRPLYAGPLDLDAFARKFSPA*
Ga0070694_10169810913300005444Corn, Switchgrass And Miscanthus RhizosphereDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLSTGALALDSFARKLRPA*
Ga0070708_10071422313300005445Corn, Switchgrass And Miscanthus RhizosphereMLGVRDTRRVAWRRQHAQRHYVGYVTVTEDTVRLAGREQATGIDVALSIPHTAIRKIRVAQNASESLVGEPTVVLELDDEEPIYVRPLGSSPLDLDGFARKLRASD*
Ga0066687_1062243623300005454SoilMLGVRDTRRVAWRRKHAPQHYVGYVTVTEQSVRLAGREHATGIDASLLIPYDAIRKVRVARDAGEEVVGEQAVVLELREDAPIYVRPLCTGRLDLDGFARKLRAT*
Ga0070681_1000798493300005458Corn RhizosphereMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLSTGALALDSFARKLRPA*
Ga0070704_10212753223300005549Corn, Switchgrass And Miscanthus RhizosphereMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVR
Ga0066707_1058540423300005556SoilMLGVRDTRRVAWRRQHAQRHYVGYVTVTEDTVRLAGREQATGIDVALSIPHTAIRKIRVAENGTETLVGEPSVVLELGDEEPIYVRPVGSSPLDLDGFVRRLRAP*
Ga0066704_1103973123300005557SoilMLGIRETRRVAWRRQHAPQHYVGYVTVTEDDVRLAGTAHHTGIDIALTIPHASISKVRVGNCHAEEVVGERSVVLELEEDEPILVRPLSVGPLDLDGFARRLRPA*
Ga0068855_10033429913300005563Corn RhizosphereVGYVTVTEKSVRLAGTEHATGIEVSLSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLQTGALGLDNFARKLRPA*
Ga0070664_10137288113300005564Corn RhizosphereRRHYVGYVTVSDEVVRLAGHEHATGIDVALSIPYAAISAIRVGSDDEGEEVVGERSVVLELHEDEPILLRPVGGGTVDLAGFARRLGAPA*
Ga0066702_1050611523300005575SoilMLGVRDTRRVAWRRKHAPQHYVGYVTVTEQSVRLAGREHATGIDASLLIPYDAIRKVRIARDAGEEVVGEQAVVLELREDAPIYVRPLCTGRLDLDGFARKLRAT*
Ga0066654_1071807623300005587SoilMLGVRDTRRVAWRRKHAPQHYVGYVTVTEQSVRLAGREHATGIDASLSIPYDAIRKVRVARDAGEEVVGEQAVVLELREDAPIYVRPLCTGRLDLDGFARKLRAT*
Ga0070717_1116514713300006028Corn, Switchgrass And Miscanthus RhizosphereVMLGIRDTRRVAWRRRHAPQHYVGYVTVTDDSVRLAGTEHHTGIDVALSIPYGAIRKVRLADDPGDEVVGERSVVLELREDDPILVRPLCTGPLDLDGFARKLRPAH*
Ga0070717_1161583623300006028Corn, Switchgrass And Miscanthus RhizosphereMLGVREARRVAWRRQHAPQHYVGYVTVTDDGVRLAGTEHHTGIDVALTIPYAAISKVRVGDCDAEEVVGERSVVMELAQDEPILVRPLSTGALDLDGFARRLRPSYSASS*
Ga0070717_1213647123300006028Corn, Switchgrass And Miscanthus RhizosphereMLGIRDTRRVAWRRRHAPQHYVGYVTVTDDSVRLAGTEHHTGIDVALSIPYGAIRKVRLADDPGDEVVGERSVVLELREDDPILVRPLCTGPLDLDGFARKLRPAH*
Ga0070716_10142432023300006173Corn, Switchgrass And Miscanthus RhizosphereMLGIRDTRRVAWRRQHALRHYVGYVTVTEDGVRLAGHEDATGIDIALSIPYDAIRKVRVARAAGEEVVGEPSVVLELHEDEPIFVRPLSAVASDLDGFARRLRSA*
Ga0070712_10056600623300006175Corn, Switchgrass And Miscanthus RhizosphereGRVMLGVLETRQVAWRRQHAQRHYVGYVTVTEHGVRLAGREQATGIDVSLSIPHTAIRQVHVGSTSAETVAGEPTVVLELCDEEPIYVRPLGDGTPDLDSFARKFRSR*
Ga0075522_1007587623300006638Arctic Peat SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEETVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLQTGAISLDSFARKLRPQ*
Ga0074063_1254330013300006953SoilMLGVRDTRRVAWRRQHARRHYVGYVSVTEETVRLAGREQTTGIDVSLSIPHTAIRTVRVGSTATELLVGEPAIVIELRDEEPIYVRPLGDGPPDLDGFARRFRAH*
Ga0104325_10175323300007822SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLTTGALGLDSFARKLRPA*
Ga0099829_1109343223300009038Vadose Zone SoilMLGVRDTRRVTWRRQHASQHYLGYVTVTDQGVRLAGREHETGIDVSLSIPHGAIRKVRIARNDGEEVVGERSVVLELRDDEPIYVRPVCTGPLDLDGFARRLRPN*
Ga0134063_1076769623300010335Grasslands SoilMMLGVRDTRRVAWRRKHAPQHYVGYVTVTEESVRLAGREHATGIDASLSIPYDAIRKVRVARNPGEEVVGERSVVLELADNDPIYLRPVSAGDVDLQSFARKIAPVG*
Ga0126360_104523633300010854Boreal Forest SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHTTGIEVSLSIPYDAIRKIRVARNAGEEVVGERAVVLELREDSPIFVRPLQTGTLGLDGFARKLRPA*
Ga0126349_110310113300010861Boreal Forest SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLQTGTLGLDGFARKLRPA*
Ga0120164_102315833300011987PermafrostMLGIRDTRRVTWRRQHATQHYVGYVTVTDDSVRLAGREHATGIDVSLSIPHGAIRKVRVARDDGEQVVGERSVVLELCDDEPIYVRPLSTGPLDLDSFARKLCQN*
Ga0120163_1000507333300012003PermafrostMLGIRDTRRVTWRRQHATQHYVGYVTVTDDSVRLAGREHATGIDVSLSIPHDAIRKVRVARDDGEQVVGERSVVLELCDDEPIYVRPLSTGPLDLDSFARKLCQN*
Ga0120163_101300533300012003PermafrostMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLNTGTLGLDSFARKLRPA*
Ga0120174_107338313300012008PermafrostMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLVTGALGLDSFA
Ga0137389_1068380923300012096Vadose Zone SoilMLGVRDTRRVTWRRQHTSQHYLGYVTVTDQGVRLAGREHETGIDVSLSIPHGAIRKVRIARNDGEEVVGERSVVLELRDDEPIYVRPVCTGPLDLDGFARRLRPN*
Ga0137388_1032984323300012189Vadose Zone SoilMLGVGDTRRVTWRRQHASQHYLGYVTVTDQGVRLAGREHETGIDVSLSIPHGAIRKVRIARNDGEEVVGERSVVLELRDDELIYVRPVCTGPLDLDGFARRLRPN*
Ga0137379_1110612933300012209Vadose Zone SoilMLGVRDTRRVAWRRQHAQRHYVGYVTVTEDTVRLAGREQATGIDVALSIPHTAIRKIRVAENGTETLVGEPSVVLELGDEEPIYVRPLGSSPLDLDGFA
Ga0150985_11756203223300012212Avena Fatua RhizosphereMLGIREARRVAWRRRHAPQHYVGYVTVTDDGVRLAGTEHHTGIDAALTIPYTAICKVRIGDCDGEDVVGERSVVLELEEDEPILVRPLSTGQLDLDGFARRLRLA*
Ga0137386_1075125813300012351Vadose Zone SoilGTRDTRRVAWRRQHARRHYVGYVTVSDDTVRLAGHERATGIDIALTIPHDAIRKVRVGREPAEEISGERSVVLELREDEPIYLRPVSAGSIDLDGFARKLRPA*
Ga0137371_1112291823300012356Vadose Zone SoilLGVRDTRRVAWRRQHAQRHYVGYVTVTEDTVRLAGREQATGIDVALSIPHTAIRKIRVAENGTETLVGEPSVVLELGDEEPIYVRPLGSSPLDLDGFARKLRGTA*
Ga0137390_1160903623300012363Vadose Zone SoilLMLGVRDTRRVTWRRQHASQHYLGYVTVTDQGVRLAGREHETGIDVSLSIPHGAIRKVRIARNDGEEVVGERSVVLELRDDEPIYVRPVCTGPLDLDGFARRLRPN*
Ga0150984_11613357323300012469Avena Fatua RhizosphereMLGIREARRVAWRRRHAPQHYVGYVTVTDDGVRLAGTEHHTGIDAALTIPYTAICKVRIGDCDGEDVVGERSVVLELEEDEPILVRPLSTG
Ga0150984_11782116243300012469Avena Fatua RhizosphereMLGVRDTRRVTWRRKHAPQHYVGYVTVTEESVRLAGREHATGIDASLSIPYGAIRKVRVARDQGEEVVGEQWVVLELGEDEPIYVRPLCTGRLDLDGFARKLRRPS*
Ga0150984_12331781933300012469Avena Fatua RhizosphereMLGVREARRVAWRRQHAPQHYVGYVTVTDDGVRLAGTEHHTGIDVALTIPYSAISRVRVGDCDAEEVVGERSVVMELQQDEPILVRPLSTGALDLDGFARRLRPAYSASS*
Ga0164300_1001875933300012951SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHSTGIEVSMSIPYDAIRKIRVARDAAEQVVGEQAVVLELREDSPIFVRPLSTGTLTLDSFARKLRPA*
Ga0164298_1007129833300012955SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHSTGIEVSMSIPYDAIRKIRVARDAAEEVVGEQAVVLELREDSPIFVRPLSTGTLTLDSFARKLRPA*
Ga0164302_1068477023300012961SoilRVAWRREHAPQHYVGYVTVTEQSVRLAGREHSTGIEVSMSIPYDAIRKIRVARDAAEQVVGEQAVVLELREDSPIFVRPLSTGTLTLDSFARKLRPA*
Ga0168317_103892523300012982Weathered Mine TailingsMLGIRDTRRVTWRRQHAAQHYVGYVTVTDESVHLAGREHATGIDASLSIPHEAIRRVRIAQDSGEEVVGERSVVLELRDDQPIYVRPVCTGPLDLDGFARRLRPG*
Ga0164305_1208455423300012989SoilMLGVRDTRRVAWRRDHAPQHYVGYVTVTERNVRLAGREHATGIEASLSIPYDAIREVRVARGEHEDVAGEPAVVLDLREDSPIFIRPVCEGPVDLDGFARKLRPL*
Ga0157373_1076803123300013100Corn RhizosphereMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHSTGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLSTGALALDSFARKLRPA*
Ga0157369_1007659643300013105Corn RhizosphereMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHDAIRNVRVGRDGGEEVVGEQSVVLELLDDEPIYVRPVGSGALNLDGFARRLRQN*
Ga0157369_1208915023300013105Corn RhizosphereMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLQTGALGLDSFARKLRPA*
Ga0120106_109410613300013427PermafrostPQHYVGYVTVTEQSVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLNTGTLGLDSFARKLRPA*
Ga0120132_104990323300013832PermafrostMLGVRDTRRVAWRREHAPQHYVGYVTVTEQAVRLAGREHATGIEVSLSIPYDAIRKVRVARDSAEEVVGERAVVLELREDSPIFVRPLVPGSLGLDSFARRLRPA*
Ga0167649_10632523300015063Glacier Forefield SoilVLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHSTGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLQTGALSLDSFARKLRPT*
Ga0132258_1221973733300015371Arabidopsis RhizosphereMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHSTGLEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLTTGALTLDSFARKLRPA*
Ga0066662_1000456943300018468Grasslands SoilMLGIRETRRVAWRRQHAPQHYVGYVTVTEDDVRLAGTAHHTGIDIALTIPHASISKVRVGNCHAEEVVGERSVVLELEEDEPILVRPLSVGPLDLDGFARRLRPA
Ga0193729_106808833300019887SoilMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHVTGIDVSLSIPHDAIRKVRVAREDGEEVVGEKSVVLELLDDEPIYLRPVCTGPLDLDSFARRLRQN
Ga0193751_102759733300019888SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEKSVRLAGTEHATGIEVSLSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLNNGALGLDNFARKLRPA
Ga0193699_1000653513300021363SoilMLGIRDTRRVTWRRQHASQHYVGYVTVTDANVRLAGREHATGIDVSLSIPHGAIRKVRVARDSGEEVVGERSVVLELLDDEPIYVRPVSTGPLDLDSFAR
Ga0193699_1004878733300021363SoilMLGIRDTRRVTWRRQHASQHYVGYVTVTDKSIRLAGREHTTGIDASLSIPHDAIRNVRLAKNGGEDVVGERSVVLELSDDEPIYVRPVCTGPLDLDGFVRKLRAS
Ga0193699_1011642123300021363SoilMLGIRDTRRVTWRRQHASQHYVGYVTVTDNCVRLAGREHKTGIDVSLSIPHDAIRKVRVARDGGEEVVGERSVVLELRDDEPIYVRPVSTAPLDLDGFARRLRQT
Ga0193699_1024130823300021363SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHTTGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLQTGALGLDSFARKLRPA
Ga0247694_100747923300024178SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHATGIEVSMSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLHNGALGLDSFARKLRPA
Ga0209483_113638123300025862Arctic Peat SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEETVRLAGREHATGIEVSLSIPYDAIRKIRVARDAGEEVVGERAVVLELREDSPIFVRPLQTGAISLDSFARKLRPQ
Ga0207707_1003095823300025912Corn RhizosphereMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHDAIRKVRVGRDGGEEVVGEQSVVLELLDDEPIYVRPVGSGALNLDGFARRLRQN
Ga0207660_1050566113300025917Corn RhizosphereMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHDAIRKVRVGRDGGEEVVGEQSVVLELHDDEPIYVRPVGSGALNLDGF
Ga0207657_1126056523300025919Corn RhizosphereMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHNAIRKVRIGRDGGEEVVGEQSVVLELHDDEPIYVRPVGSGALNLDGFARRLRQN
Ga0207700_1174852913300025928Corn, Switchgrass And Miscanthus RhizosphereETRQVAWRRQHAQRHYVGYVTVTEHGVRLAGREQATGIDVSLSIPHTAIRQVHVGSTSAETVAGEPTVVLELCDEEPIYVRPLGDGTPDLDSFARKFRSR
Ga0207665_1108212223300025939Corn, Switchgrass And Miscanthus RhizosphereMLGIRDTRRVAWRRQHALRHYVGYVTVTEDGVRLAGHEDATGIDIALSIPYDAIRKVRVARAAGEEVVGEPSVVLELHEDEPIFVRPLSAVASDLDGFARRLRSA
Ga0207667_1084569223300025949Corn RhizosphereMLGVRDTRRVAWRREHAPQHYVGYVTVTEKSVRLAGTEHATGIEVSLSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLQTGALGLDNFARKLRPA
Ga0209647_113814323300026319Grasslands SoilMLGIRDTRRVTWRRQHASQHYVGYVTVTDASVRLAGREHATGIDVSLSIPHDAIRKVRVGRDRGEEVVGEQSVVLELLDDEPIYVRPVGSAPLNLDGFARRLRQN
Ga0209474_1006712933300026550SoilMLGVRDTRRVAWRRKHAPQHYVGYVTVTEQSVRLAGREHATGIDASLSIPYDAIRKVRVARDAGEEVVGEQAVVLELREDAPIYVRPICTGRLDLDGFARKLRAT
Ga0265334_1001545823300028573RhizosphereMLGVHDTRRVAWRRQHAQRHYVGYVTVTDDTVRLAGREQATGIDVALSIPHTAVRRVRVAKNGSEEVVGERSVVLELSDDEPIYVRPLDTGSLDLDSFARKLRGPS
Ga0265323_1006495933300028653RhizosphereQHAQRHYVGYVTVTDDTVRLAGREQATGIDVALSIPHTAVRRVRVAKNGSEEVVGERSVVLELSDDEPIYVRPLDTGSLDLDSFARKLRGPS
Ga0265336_1007859523300028666RhizosphereMLGVHDTRRVAWRRQHAQRHYVGYVTVTDDTVRLAGREQATGIDVALSIPHTAVRRVRVARNGSEEVVGERSVVLELSDDEPIYVRPLDTGSLDLDSFARKLRGP
Ga0307316_1028088913300028755SoilMLGVRDTRRVAWRREHAPQHYVGYVTVTEQSVRLAGREHSTGIEVSMSIPYDAIRKIRVARDAAEEVVGERAVVLELREDSPIFVRPLSTGALALDSFARKLRPA
Ga0265338_1013310613300028800RhizosphereQRHYVGYVTVTDDTVRLAGREQATGIDVALSIPHTAVRRVRVARNGSEEVVGERSVVLELSDDEPIYVRPLDTGSLDLDSFARKLRGP
Ga0302299_1020858213300030010FenKADETRKHRSRIARRGRVMLGVRDTRRVAWRRQHAQRHYVGYVTVTDQAVRLAGRERTTGIDVSLSIPHTAIRDVRVGTKDTELVDGDLTVVLELRDEEPIYVRPLGDGPADLDGFARRFRAQ
Ga0311333_1177505813300030114FenMLGVRDTRRVAWRRQHAQRHYVGYVTVTEDSVRLAGREQATGIDVALSIPRSAIGAVRVGTEDTEKVDGELTVVLELRDEEPIYVRPVGTGPQDLDSFARKFSAQ
Ga0073997_1193020013300030997SoilMLGIRDTRRVTWRRQHAAQHYVGYVTVSEDGVRLAGREHATGIDASLSIPYDAIRKVRVARDGGEEVVVGERSVVLELRDDEPIYVRPVSTGPLDLDGFARKLRQR
Ga0073995_1217373013300031047SoilMLGIRDTRRVTWRRQHAHQHYVGYVTVTDESVRLAGREHATGIDVSLSIPHDAIRRVRLARDDGEEVVGERSVVLELRDDQPIYVRPVSTGALDLDSFARRLRQS
Ga0302323_10278556213300031232FenGPPLLLRSGKADEVRKHRSRIARRGLVMLGVRDTRRVAWRRQHAQRHYVGYVTVTEDSVRLAGREQATGIDVALSIPRSAIGAVRVGTEDTEKVDGELTVVLELRDEEPIYVRPVGTGPQDLDSFARKFSAQ
Ga0265330_1007427813300031235RhizosphereGVHDTRRVAWRRQHAQRHYVGYVTVTDDTVRLAGREQATGIDVALSIPHTAVRRVRVAKNGSEEVVGERSVVLELSDDEPIYVRPLDTGSLDLDSFARKLRGPS
Ga0307374_1001848943300031670SoilMLGIRDTRRVAWRRQHARRHYVGYVTVTENSVRLAGHEHATGIDIALSIPRDAIRRVRVARDVGEEVVGERSVVLELRDDEPIFVRPLSNGSLDLDGFARRLQAS
Ga0307373_1017117813300031672SoilVLGVRDTRRVAWRRAHARRHYIGYVTVTEDTVRLAGREGSSGIDVSLSIPHDAIRTVRVARNAGEEVVGERSVVLELRDEEPIFLRPLAIGRLDLDGFARKLRAG
Ga0311367_1015508033300031918FenMLGVRDTRRVAWRRQHAQRHYVGYVTVTDQAVRLAGRERTTGIDVSLSIPHTAIRDVRVGTKDTELVDGDLTVVLELRDEEPIYVRPLGDGPADLDGFARRFRAQ
Ga0335070_1043470023300032829SoilMLGVRDARQVAWRRQHAQRHYVGYVTVTEESVRLAGREQTTGIDVALSIPHTAIRDVRVGTRSTELVDGELSVILELRDDEPIYVRPLGDPPLDLDGFARRFRAG
Ga0370501_0012023_50_3673300034195Untreated Peat SoilMLGLREARRVAWRRQHARRYYVGYVTVTETTVRFAGREDATGIDITLAIPYNAIHKIRVAQNPAEEVVGERGVVLELIEDEPIYVRPIYPSSADLDDFARKLSQT
Ga0370501_0069003_724_10443300034195Untreated Peat SoilMMLGVRDTRRVAWRRQHAQRHYVGYVTVTEDSVRLAGREQATGIDVALSIPHSAIRSVRVGTEDTEKVDGELTVVLELRDEEPIYVRPVGTGPQDLDSFARKFSAN
Ga0372943_0642089_132_4493300034268SoilMLGVGDTRRVAWRREQAARHYLGYVTVTEDAVRLKGREQASGIDVALSIPRSAIRKIRVASNSTESVVGEPCVVLELGNEEPIYVRPVDSRPLALPAFARRLGSR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.