Metagenome / Metatranscriptome Family F097754

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097754
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	MLYSTYRELVLPEEAERYWKIEPAAEAKNVVAFGAS
Number of Associated Samples	78
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.83 %
% of genes near scaffold ends (potentially truncated)	89.42 %
% of genes from short scaffolds (< 2000 bps)	96.15 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.885 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (27.885 % of family members)
Environment Ontology (ENVO)	Unclassified (40.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.308 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.50% β-sheet: 0.00% Coil/Unstructured: 87.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF12728	HTH_17	14.42
PF00589	Phage_integrase	2.88
PF13884	Peptidase_S74	1.92
PF13370	Fer4_13	0.96
PF00239	Resolvase	0.96
PF12951	PATR	0.96
PF13176	TPR_7	0.96
PF09250	Prim-Pol	0.96
PF01053	Cys_Met_Meta_PP	0.96
PF14534	DUF4440	0.96
PF01554	MatE	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.96
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.96
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.96
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.96
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.96
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.96
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.96
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.96
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.96
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.96
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.96
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.88 %
Unclassified	root	N/A	22.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.88 %
Unclassified	root	N/A	22.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.88 %
Unclassified	root	N/A	22.12 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	69.23 %
Unclassified	root	N/A	22.12 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	69.23 %
Unclassified	root	N/A	22.12 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	13.46 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3.85 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.92 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	3.85 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.92 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	2.88 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.92 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.96 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	2.88 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	1.92 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.96 %
unclassified Opitutaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae	0.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	2.88 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	1.92 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	0.96 %
Opitutaceae bacterium TAV1	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1	0.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	2.88 %
Verrucomicrobium sp. 3C	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. 3C	1.92 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	0.96 %
Opitutaceae bacterium TAV1	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1	0.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16859870	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1814	Open in IMG/M
2170459002\|FZY7DQ102IEIAE	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	520	Open in IMG/M
2170459005\|F1BAP7Q01AT8JM	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	550	Open in IMG/M
2170459006\|GBPF9FW02FLNMR	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	536	Open in IMG/M
2170459013\|GO6OHWN01DF9ZS	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	546	Open in IMG/M
2228664022\|INPgaii200_c0898277	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	656	Open in IMG/M
2228664022\|INPgaii200_c1025100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0840510	Not Available	941	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0840887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1836270	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	651	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13532277	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	651	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100203472	Not Available	624	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100350155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	939	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100444571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	663	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100474637	Not Available	805	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100640931	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1304	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101720683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1165	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101789483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	537	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105387938	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1317	Open in IMG/M
3300000550\|F24TB_10153166	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	676	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10041436	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1218	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10058805	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	846	Open in IMG/M
3300000955\|JGI1027J12803_100067731	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	728	Open in IMG/M
3300000955\|JGI1027J12803_100593079	Not Available	944	Open in IMG/M
3300000955\|JGI1027J12803_100720172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1218	Open in IMG/M
3300000955\|JGI1027J12803_100842777	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	783	Open in IMG/M
3300000955\|JGI1027J12803_101441005	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300000955\|JGI1027J12803_103522198	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300001139\|JGI10220J13317_10566073	Not Available	593	Open in IMG/M
3300002899\|JGIcombinedJ43975_10028564	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300004114\|Ga0062593_102930257	Not Available	545	Open in IMG/M
3300004479\|Ga0062595_101842157	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. 3C	577	Open in IMG/M
3300004480\|Ga0062592_100996228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV1	765	Open in IMG/M
3300004480\|Ga0062592_102421044	Not Available	527	Open in IMG/M
3300005174\|Ga0066680_10022878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3442	Open in IMG/M
3300005332\|Ga0066388_100475100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1889	Open in IMG/M
3300005332\|Ga0066388_101412067	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1210	Open in IMG/M
3300005332\|Ga0066388_104467824	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	712	Open in IMG/M
3300005439\|Ga0070711_101004997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. 3C	716	Open in IMG/M
3300005445\|Ga0070708_100443312	Not Available	1225	Open in IMG/M
3300005467\|Ga0070706_100860411	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	838	Open in IMG/M
3300005554\|Ga0066661_10732547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	579	Open in IMG/M
3300005614\|Ga0068856_101856848	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005764\|Ga0066903_100008359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9543	Open in IMG/M
3300005764\|Ga0066903_101736814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1189	Open in IMG/M
3300005764\|Ga0066903_105608871	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005764\|Ga0066903_106116338	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	630	Open in IMG/M
3300006031\|Ga0066651_10389486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	744	Open in IMG/M
3300006175\|Ga0070712_101923144	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	518	Open in IMG/M
3300006794\|Ga0066658_10072247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1550	Open in IMG/M
3300006796\|Ga0066665_10165698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1689	Open in IMG/M
3300009012\|Ga0066710_104625880	Not Available	514	Open in IMG/M
3300009038\|Ga0099829_10380459	Not Available	1165	Open in IMG/M
3300010046\|Ga0126384_10430293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1122	Open in IMG/M
3300010048\|Ga0126373_10659358	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300010376\|Ga0126381_102608144	Not Available	723	Open in IMG/M
3300012022\|Ga0120191_10082412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	631	Open in IMG/M
3300012200\|Ga0137382_11152442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	552	Open in IMG/M
3300012211\|Ga0137377_11041927	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	748	Open in IMG/M
3300012285\|Ga0137370_10187691	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1209	Open in IMG/M
3300012361\|Ga0137360_10586992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	953	Open in IMG/M
3300012917\|Ga0137395_10311582	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1117	Open in IMG/M
3300012918\|Ga0137396_10409137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1006	Open in IMG/M
3300012924\|Ga0137413_11309302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	582	Open in IMG/M
3300012924\|Ga0137413_11483544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	550	Open in IMG/M
3300012925\|Ga0137419_10706227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	818	Open in IMG/M
3300012925\|Ga0137419_11739102	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300012971\|Ga0126369_11506848	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	762	Open in IMG/M
3300012971\|Ga0126369_13561504	Not Available	510	Open in IMG/M
3300013297\|Ga0157378_12392041	Not Available	580	Open in IMG/M
3300015264\|Ga0137403_11580512	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	509	Open in IMG/M
3300016341\|Ga0182035_10792765	Not Available	831	Open in IMG/M
3300016357\|Ga0182032_10557668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	949	Open in IMG/M
3300016387\|Ga0182040_10093312	All Organisms → cellular organisms → Bacteria	2021	Open in IMG/M
3300016404\|Ga0182037_11919085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	531	Open in IMG/M
3300016422\|Ga0182039_11568514	Not Available	601	Open in IMG/M
3300018066\|Ga0184617_1054467	Not Available	1027	Open in IMG/M
3300018431\|Ga0066655_10300547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1045	Open in IMG/M
3300018433\|Ga0066667_12124737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	520	Open in IMG/M
3300019877\|Ga0193722_1027710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1466	Open in IMG/M
3300019881\|Ga0193707_1081188	Not Available	993	Open in IMG/M
3300021088\|Ga0210404_10585745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300021560\|Ga0126371_10727159	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1140	Open in IMG/M
3300021560\|Ga0126371_13035710	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300022534\|Ga0224452_1112101	Not Available	836	Open in IMG/M
3300023058\|Ga0193714_1065508	Not Available	510	Open in IMG/M
3300025910\|Ga0207684_10700239	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	861	Open in IMG/M
3300025930\|Ga0207701_11305673	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300026121\|Ga0207683_12063075	Not Available	518	Open in IMG/M
3300026498\|Ga0257156_1113773	Not Available	563	Open in IMG/M
3300026537\|Ga0209157_1229070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300028791\|Ga0307290_10244586	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	657	Open in IMG/M
3300030844\|Ga0075377_11641918	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	574	Open in IMG/M
3300031231\|Ga0170824_119263492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1193	Open in IMG/M
3300031446\|Ga0170820_11968329	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	762	Open in IMG/M
3300031640\|Ga0318555_10460894	Not Available	689	Open in IMG/M
3300031680\|Ga0318574_10454165	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	750	Open in IMG/M
3300031744\|Ga0306918_10669484	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	812	Open in IMG/M
3300031910\|Ga0306923_10660464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1168	Open in IMG/M
3300031912\|Ga0306921_11863235	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	645	Open in IMG/M
3300032180\|Ga0307471_103196043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	581	Open in IMG/M
3300032205\|Ga0307472_102116819	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300033290\|Ga0318519_10585217	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	677	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.12%
Host-Associated	Host-Associated	2.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.19%
Plants	Host-Associated → Plants	2.88%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.19%
Sediment	Environmental → Aquatic → Sediment	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.69%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	35.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	27.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03484790	2088090014	Soil	STYRELVLPEEAERYWKLVPAVKAENLLSFSSNAIA
E1_07106190	2170459002	Grass Soil	MLYSTYRELVLPEEAERYWKIAPISAAKNVVEFSANP
E41_10055060	2170459005	Grass Soil	GHTTPQMLYSTYREVVRPEEAERYWKIAPSEEAKNVVSFASV
L01_01616260	2170459006	Grass Soil	MLYGTYRELVHPEEAKRYWKIAPAAETKNVVAFSAS
N57_03041470	2170459013	Grass Soil	MLYGTYRELVLPDEAKRYWDIAPVAETGKVVAFNQGK
INPgaii200_08982771	2228664022	Soil	PQMLYSTYRELVLPEEAERYWKVVPESKAENVVAFGAQ
INPgaii200_10251002	2228664022	Soil	HTSPQMLYSTYRELVFPDEAKRYWKLIPDRKAENVLFFSTSAS
ICChiseqgaiiDRAFT_08405101	3300000033	Soil	TYRELVLPKEAERFWKLIPESEPENVLSFNAKSTA*
ICChiseqgaiiDRAFT_08408872	3300000033	Soil	MLYSTYREVVLPEEAERYWELIPEEKAKNVVSFNAKSTA*
ICChiseqgaiiDRAFT_18362701	3300000033	Soil	LGHASPQMLYSTYRELVLPSEAERYWKIEPAXEGXXVVAXAR
ICChiseqgaiiFebDRAFT_135322771	3300000363	Soil	LGHASPQMLYSTYRELVLPSEAERYWKIEPAXEGXXVVAXAR*
INPhiseqgaiiFebDRAFT_1002034721	3300000364	Soil	ELVLPEEAERYWKIAPQSGEAENVVAFTASAQLK*
INPhiseqgaiiFebDRAFT_1003501551	3300000364	Soil	GHTSPQMLYSTYRELVLPEQAERYWKIVPWPPEAKNVLAFSAS*
INPhiseqgaiiFebDRAFT_1004445712	3300000364	Soil	ELGHTTPQLLYSTYRELVLPEEAARYWKLAPDVKAENVVSFSA*
INPhiseqgaiiFebDRAFT_1004746373	3300000364	Soil	FQHYRELVTPEEAERYWKTTPETDAANVVSFEANKAS*
INPhiseqgaiiFebDRAFT_1006409311	3300000364	Soil	YSTYRELVLPEDAERYWKITPIVAAKNIVEFNASS*
INPhiseqgaiiFebDRAFT_1017206833	3300000364	Soil	MLYSTYRELVLPEEAVRYWQIAPQTESANVVAFKAS*
INPhiseqgaiiFebDRAFT_1017894832	3300000364	Soil	TSPQMLYSTYREIVLPEEAERYWKLVPDVKAKNMVSFRA*
INPhiseqgaiiFebDRAFT_1053879381	3300000364	Soil	HSTSQMLYSTYRELVLPEEAERYWKIAPQPDSNLVAFVESRG*
F24TB_101531663	3300000550	Soil	QMLYSTYREVVLPEEAERYWQLVPEVKTENVIAFDPTATA*
AF_2010_repII_A1DRAFT_100414364	3300000597	Forest Soil	MLYSTYREVVTPEEAERYWKIAPPAGTEKIVAFTNA*
AF_2010_repII_A001DRAFT_100588051	3300000793	Forest Soil	PQMLYSTYREVVLPEEAERYWNIAPAVETQNVVAFTRA*
JGI1027J12803_1000677312	3300000955	Soil	ELGHTSPQMLYSTYRELVLPEEVERYWKIAPAAEAEKVVAFSQGR*
JGI1027J12803_1005930792	3300000955	Soil	MLYSTYRELVLPEEAERYWKIEPAAEAKNVVAFGAS*
JGI1027J12803_1007201721	3300000955	Soil	MLYSTYREVVLPEEAERYWDIMPAADAANVVSFAGAQS*
JGI1027J12803_1008427773	3300000955	Soil	KMLYSTYRELVLPQEAERYWKIVPEAQAANVVAFNSTATA*
JGI1027J12803_1014410051	3300000955	Soil	ELGHTSPQMLYSTYRELVLPEEAERYWKVVPESKAENVVAFGAQ*
JGI1027J12803_1035221983	3300000955	Soil	LGHTSPQMLYSTYRELVLEEEAKRYWNIGPAVEAEKVVEFTKTGP*
JGI1027J12803_1067976242	3300000955	Soil	MLYSTYREVVIPQEAERYWQIVPAADAANVVTFKATALS*
JGI10220J13317_105660732	3300001139	Soil	ASELGHTTPQLLYSCYRELVLPAEADAYWEIGPAAEAVNVVAFTGA*
JGIcombinedJ43975_100285641	3300002899	Soil	LGHTSPQMLYSTYRELVLSEEAERYWKIKPAAEAANVVAFAK*
Ga0062593_1029302572	3300004114	Soil	LGHTAPQLLYNTYRELVHPEEAERYWRISPPTEEGIVAFQSSDQP*
Ga0062595_1018421571	3300004479	Soil	TSPQMLYNTYRELVLPDEAERYWKVVPQSGEATNVVSFTTSANR*
Ga0062592_1009962281	3300004480	Soil	TSPQMLYSTYRELVLPAEAERYWQIAPAAEAGKVVVFTAVPQPRL*
Ga0062592_1024210441	3300004480	Soil	ELGHSTAHLLYNTYRELVHPDEAARYWKVCPSTKAENVVTFAQAKQG*
Ga0066680_100228782	3300005174	Soil	MLYNTYRELVLPEEAERYWKVVPQSGEATNVVSFTTSANR*
Ga0066388_1004751006	3300005332	Tropical Forest Soil	GHTSPQMLYSTYRELVRPEDAERYWNLAPAAEMQNVVAFTRA*
Ga0066388_1014120671	3300005332	Tropical Forest Soil	LGHTSPQMLYSTYRELVLPEEAERYWKIAPAVETQKLVAFTSAAKIDSR*
Ga0066388_1044678241	3300005332	Tropical Forest Soil	GHTSPQMLYSTYRELVRPEDAERYWNLAPAAEMQNVVAFSRV*
Ga0070711_1010049971	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VELGHTSPQMLYTNYRELVRPEEAERYWQIVPAAAAENVVAFASA*
Ga0070708_1004433125	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LGHSTPAMLYAHYRELVVPEEAKRYWKIAPAAEPNVLAFGNS*
Ga0070706_1008604112	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	HTTPQLLYSTYRELVLPDEAQRYWKIAPAAETKNVVAFSAC*
Ga0066661_107325472	3300005554	Soil	SPQMLYSTYREVVLPEEAERYWQLVPEAKAANVVAFGA*
Ga0068856_1018568481	3300005614	Corn Rhizosphere	HISPQMLYSTYRELVLPVDAERYWAIAPITEAENVVAFSAK*
Ga0066903_10000835913	3300005764	Tropical Forest Soil	STYRELVLPTEAERYWKIEPAAQTANVVAFSVAS*
Ga0066903_1017368142	3300005764	Tropical Forest Soil	SELGHTSPKMLYSTYRELVLPAEAERFWKIAPVMEGQNVVAFVS*
Ga0066903_1056088711	3300005764	Tropical Forest Soil	AAELGHTTPQLLYSTYRELVLPQEAARYWKIEPAEETANVVAFSANA*
Ga0066903_1061163381	3300005764	Tropical Forest Soil	ELGHTTPQMLYNTYRELVRPEEAERYWKIAPAAGAENVLAFTAS*
Ga0066651_103894862	3300006031	Soil	MLYSTYRELVLPSEAQRYWQIMPDKIANVAAFSASSQ
Ga0070712_1019231442	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SPQMLYSTYRELVLPEEAERYWKLIPEAKAKNIVSFSA*
Ga0066658_100722471	3300006794	Soil	MLYNTYRELVLPEEAERYWKVVPQSGEATNVVSFTTSANREPRKGLLG
Ga0066665_101656981	3300006796	Soil	HTSPQMLYSTYRELVLPEEAERYWKIAPQSRRAENIVAFTAS*
Ga0066710_1046258801	3300009012	Grasslands Soil	LLYSAYRELVLPEQAERYWTIAPAEEGKNVVAFASV
Ga0099829_103804591	3300009038	Vadose Zone Soil	ELGHTTSQLVYQHYREVVTPEEAERYWKIMPAADAQNVVAFSNS*
Ga0126384_104302931	3300010046	Tropical Forest Soil	MLYSTYRELVLPDEAERYWKIEPATETENIVAFSR*
Ga0126373_106593581	3300010048	Tropical Forest Soil	ELGHTSPQMLYSTYRELVLPEEAERYWKIAPAAESEKIVAFSR*
Ga0126381_1026081441	3300010376	Tropical Forest Soil	GHTTPQLLYSTYRELVRPDEADLYWNLAPAAEMQNVVAFTRV*
Ga0120191_100824122	3300012022	Terrestrial	MLYSSYRELVLPEEAERYWKLVPDAKAANVVAFSA*
Ga0137382_111524421	3300012200	Vadose Zone Soil	HTSPQMLYSTYRELVLPEEAQRYWKLIPDREANNVLSFSTGTS*
Ga0137377_110419273	3300012211	Vadose Zone Soil	HTSPQMLYSTYREVVLPEEAERYWELVPDVKAANVVAFGA*
Ga0137370_101876913	3300012285	Vadose Zone Soil	LGHTGPQMLYSTYRELVLPKEADRYWQIAPAAEAGKVVAFAPS*
Ga0137360_105869921	3300012361	Vadose Zone Soil	STSQMLYTTYRELVLPEEAERYWKIAPHSGEAENVVAFTASAQRK*
Ga0137395_103115821	3300012917	Vadose Zone Soil	LYSTYRELVLPEEAERYWKIVPQSGDAENVVAFTAWAQPE*
Ga0137396_104091371	3300012918	Vadose Zone Soil	QMLYSTYRELVLPEEAERYWKISPETKAENVVSFNTKATA*
Ga0137413_113093022	3300012924	Vadose Zone Soil	SVELGHTSPQMLYSTYRELVLPTEAERYWTIVPKEETANVVAFSASA*
Ga0137413_114835441	3300012924	Vadose Zone Soil	LGHTSPQMLYSTYRELVLPTEAERYWTILPTEETANVVAFSASA*
Ga0137419_107062271	3300012925	Vadose Zone Soil	QMLYSTYRELVLPTEAERYWTILPTEETANVVAFSASA*
Ga0137419_117391021	3300012925	Vadose Zone Soil	YSTYRELVLPEEAERYWNIQPTAEAENVVTFKASV*
Ga0126369_115068481	3300012971	Tropical Forest Soil	TSPQMLYSTYRELVLPTEAERYWKIEPAAQTANVVAFSVAS*
Ga0126369_135615041	3300012971	Tropical Forest Soil	MLYSTYRELVLPEEAERYWKLAPQGEGANVVTFNAVNP*
Ga0157378_123920411	3300013297	Miscanthus Rhizosphere	TKMLYSNYRELVLPEEAERYWKISPGKTEKVVAFSA*
Ga0137403_115805122	3300015264	Vadose Zone Soil	MLYSTYREVVLPEEAERYWGLVPEVKAENVVAFSAASSN*
Ga0182035_107927651	3300016341	Soil	PQMLYGTYRELVLPEEAERYWKIAPAEEAENVVALRGSSIAQ
Ga0182032_105576682	3300016357	Soil	LYSTYRELVLSEEAQRYWMIEPQPADAGKVLAFSTS
Ga0182040_100933123	3300016387	Soil	ELGHTTPQLLYSTYRELVQPEEAERYWKIQPTAEATNVVTFKASVRLAPSP
Ga0182037_119190851	3300016404	Soil	TSPQMLYSTYRELVLPEEAERYWKIAPAAETGKVVAFSAS
Ga0182039_115685141	3300016422	Soil	TSPQMLYGTYRELVLPEEAERYWKIAPAEEAENVVALRGSSIAQ
Ga0184617_10544671	3300018066	Groundwater Sediment	TYREVVLPEEAERYWKISPETKAENVVSFNTNATA
Ga0066655_103005471	3300018431	Grasslands Soil	AAELGHTSPQMLYGTYRELVHPEEAERYWKISPAVDAGKVVAFAGA
Ga0066667_121247371	3300018433	Grasslands Soil	LLYSTYRELVLPSEAERYWNIRPETEAANVVSFASQK
Ga0193722_10277101	3300019877	Soil	HTSPQMLYSTYREVVLPEEAERYWKISPETKAENVVSFNTKATA
Ga0193707_10811883	3300019881	Soil	STYRELVLPEEAERYWKIVPAVKAENLLSFSSNAIA
Ga0210404_105857453	3300021088	Soil	NTYRELVLPEEAERYWKIGPESGMAENVVAFTASVQLE
Ga0126371_107271592	3300021560	Tropical Forest Soil	MLYGVYRELVLPEEAERYWKLVADAKAENILAFGSKAT
Ga0126371_130357102	3300021560	Tropical Forest Soil	GHTSPAILYNVYRELVLPAEAERYWKVQPAEEAENMVAFSRAS
Ga0224452_11121011	3300022534	Groundwater Sediment	YSTYREVVLPEEAERYWKISPETKAENVVSFNTKATA
Ga0193714_10655082	3300023058	Soil	GNTSTKMLYSTYREVVQPEEAARYWKIGPSATDNVISFAAK
Ga0207684_107002392	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ELGHTTPQLLYSTYRELVLPDEAQRYWKIAPAAETKNVVAFSAC
Ga0207701_113056731	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	STYREVVLPSEAERYWLVRPQAEAGNVVAFGAGAKHN
Ga0207683_120630751	3300026121	Miscanthus Rhizosphere	MLYSTYRELVLPEEAERYRKIVPSATPNVISFTASHGRQH
Ga0257156_11137732	3300026498	Soil	STPAMLYAHYRELVLPEDAQRYWEIAPAAEAENVLAFSK
Ga0209157_12290701	3300026537	Soil	MLYSTYRELVLPEEAERYWKIAPQSRRAENIVAFTAS
Ga0307290_102445862	3300028791	Soil	TSPQMLYNTYRELVLPEEAERYWKVVPQSGEATNVVSFTTSANR
Ga0075377_116419181	3300030844	Soil	HTTPTMLYSTYRELVLPEEAQRYWNIAPVASALNVIPLAQTK
Ga0170824_1192634923	3300031231	Forest Soil	SELGHTSPKMLYSTYRELVLPEEAERYWKIAPISAAKNVVEFSANP
Ga0170820_119683291	3300031446	Forest Soil	AAELGHTSPQMLYSNYRELVLPEEAERYWKIAPAAEVGNLVAFVS
Ga0318555_104608943	3300031640	Soil	MLYSTYRELVLPEEAERYWKIAPVSESERVVAFSAS
Ga0318574_104541652	3300031680	Soil	GHTSPQMLYSTYRELVLPEEAERYWKIEPVVDAKNVVAFTKTASTHR
Ga0306918_106694841	3300031744	Soil	HTTPQLLYSTYRELVLPEEAERYWKIAPAADKTNVVAFAAS
Ga0306923_106604643	3300031910	Soil	MLYNTYRELVLPEEAERYWKIAPAAETKDVVAFTAS
Ga0306921_118632352	3300031912	Soil	PQMLYNTYREVVLPEEGERYWKIAPAADTKNVLAFATTA
Ga0307471_1031960431	3300032180	Hardwood Forest Soil	PQMLYSTYRELVLPQEAERYWKLAPVADPANLVAFRVS
Ga0307472_1021168191	3300032205	Hardwood Forest Soil	TSPQMLYSTYRELVLPEEAERYWKIAPGNADEKTLAFASLR
Ga0318519_105852172	3300033290	Soil	ELGHTGPQMLYSTYRELVLPEEAERYWTIAPLSDALNVIPLTAKV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097754

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences