NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F097573

Metagenome / Metatranscriptome Family F097573

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F097573
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 45 residues
Representative Sequence MDSQRDDMQSLPEGIEALRALVLTTMSERDAAVTERDTLLAQN
Number of Associated Samples 100
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 79.41 %
% of genes near scaffold ends (potentially truncated) 94.23 %
% of genes from short scaffolds (< 2000 bps) 97.12 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (98.077 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.115 % of family members)
Environment Ontology (ENVO) Unclassified
(23.077 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.154 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.25%    β-sheet: 0.00%    Coil/Unstructured: 57.75%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF05717TnpB_IS66 74.04
PF01527HTH_Tnp_1 21.15
PF00239Resolvase 0.96
PF13007LZ_Tnp_IS66 0.96
PF13610DDE_Tnp_IS240 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG3436TransposaseMobilome: prophages, transposons [X] 74.04
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.96
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.96

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.08 %
UnclassifiedrootN/A1.92 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000787|JGI11643J11755_10726624All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria502Open in IMG/M
3300000955|JGI1027J12803_109599153All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1497Open in IMG/M
3300001173|JGI12669J13542_105253All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria509Open in IMG/M
3300001661|JGI12053J15887_10503525All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria578Open in IMG/M
3300002239|JGI24034J26672_10109184All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria527Open in IMG/M
3300004082|Ga0062384_101071323All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria580Open in IMG/M
3300004152|Ga0062386_101667604All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium532Open in IMG/M
3300005354|Ga0070675_101868787All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria554Open in IMG/M
3300005435|Ga0070714_100558384All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1097Open in IMG/M
3300005459|Ga0068867_101393508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria650Open in IMG/M
3300005539|Ga0068853_100608491All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas1038Open in IMG/M
3300005578|Ga0068854_100445024All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1081Open in IMG/M
3300005616|Ga0068852_101609106All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria672Open in IMG/M
3300005617|Ga0068859_100813109All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas1022Open in IMG/M
3300005617|Ga0068859_101505621All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria743Open in IMG/M
3300005952|Ga0080026_10069283All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria949Open in IMG/M
3300006052|Ga0075029_100422274All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria870Open in IMG/M
3300006057|Ga0075026_100330171All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria840Open in IMG/M
3300006059|Ga0075017_101136019All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria611Open in IMG/M
3300006358|Ga0068871_101094824All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae745Open in IMG/M
3300006893|Ga0073928_10928266All Organisms → cellular organisms → Bacteria → Proteobacteria595Open in IMG/M
3300009075|Ga0105090_10240520All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1116Open in IMG/M
3300009500|Ga0116229_11295385All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria579Open in IMG/M
3300009623|Ga0116133_1147407All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria616Open in IMG/M
3300009649|Ga0105855_1106336All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria792Open in IMG/M
3300010039|Ga0126309_10762255All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria628Open in IMG/M
3300010373|Ga0134128_10827626All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1026Open in IMG/M
3300010403|Ga0134123_10492931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1151Open in IMG/M
3300012212|Ga0150985_102061826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria869Open in IMG/M
3300012683|Ga0137398_10567950All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria783Open in IMG/M
3300012930|Ga0137407_10728093All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria935Open in IMG/M
3300013306|Ga0163162_10644805All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1183Open in IMG/M
3300013308|Ga0157375_10678805All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas1185Open in IMG/M
3300014168|Ga0181534_10645313All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria613Open in IMG/M
3300014169|Ga0181531_10675959All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria641Open in IMG/M
3300014493|Ga0182016_10319933All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria942Open in IMG/M
3300014495|Ga0182015_10588083All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria707Open in IMG/M
3300016357|Ga0182032_11625896All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria562Open in IMG/M
3300016445|Ga0182038_10445923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1094Open in IMG/M
3300017946|Ga0187879_10579799All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria623Open in IMG/M
3300018033|Ga0187867_10270112All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas956Open in IMG/M
3300018088|Ga0187771_10922107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas741Open in IMG/M
3300019786|Ga0182025_1049759All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1010Open in IMG/M
3300020579|Ga0210407_10869729All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria692Open in IMG/M
3300020580|Ga0210403_11029703All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria643Open in IMG/M
3300021088|Ga0210404_10019692All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2887Open in IMG/M
3300021088|Ga0210404_10407613All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria760Open in IMG/M
3300021088|Ga0210404_10482027All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria699Open in IMG/M
3300021171|Ga0210405_10415780All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1058Open in IMG/M
3300021181|Ga0210388_10517034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas1047Open in IMG/M
3300021407|Ga0210383_10399897All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1185Open in IMG/M
3300021420|Ga0210394_10718915All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae875Open in IMG/M
3300021445|Ga0182009_10652393All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria567Open in IMG/M
3300021479|Ga0210410_11489603All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria570Open in IMG/M
3300021860|Ga0213851_1371401All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae974Open in IMG/M
3300024186|Ga0247688_1040433All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria732Open in IMG/M
3300025321|Ga0207656_10323652All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae766Open in IMG/M
3300025900|Ga0207710_10220453All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas942Open in IMG/M
3300025914|Ga0207671_11294834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria568Open in IMG/M
3300025934|Ga0207686_10368126All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas gilardii1087Open in IMG/M
3300025942|Ga0207689_10688144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas862Open in IMG/M
3300026217|Ga0209871_1031043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1001Open in IMG/M
3300026281|Ga0209863_10119109All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria775Open in IMG/M
3300026294|Ga0209839_10136515All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas817Open in IMG/M
3300026683|Ga0208210_100766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria560Open in IMG/M
3300027334|Ga0209529_1087930All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria526Open in IMG/M
3300027528|Ga0208985_1093695All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria577Open in IMG/M
3300027684|Ga0209626_1183670All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria554Open in IMG/M
3300027692|Ga0209530_1181451All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria584Open in IMG/M
3300027737|Ga0209038_10182495All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria635Open in IMG/M
3300028145|Ga0247663_1041347All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales757Open in IMG/M
3300028714|Ga0307309_10078722All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria759Open in IMG/M
3300028722|Ga0307319_10262249All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria569Open in IMG/M
3300028876|Ga0307286_10366826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria537Open in IMG/M
3300028879|Ga0302229_10323667All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria691Open in IMG/M
3300029442|Ga0239579_1045593All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria676Open in IMG/M
3300029944|Ga0311352_10353082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas1213Open in IMG/M
3300030053|Ga0302177_10206186All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. FDAARGOS_3621081Open in IMG/M
3300030580|Ga0311355_10521257All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1136Open in IMG/M
3300030763|Ga0265763_1045676All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria539Open in IMG/M
3300030878|Ga0265770_1143450All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria519Open in IMG/M
3300031090|Ga0265760_10327836All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300031234|Ga0302325_11545139All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria851Open in IMG/M
3300031543|Ga0318516_10211645All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1120Open in IMG/M
3300031573|Ga0310915_10302889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → unclassified Roseomonas → Roseomonas sp. FDAARGOS_3621130Open in IMG/M
3300031668|Ga0318542_10601187All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria574Open in IMG/M
3300031680|Ga0318574_10805154All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria550Open in IMG/M
3300031708|Ga0310686_105411160All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria556Open in IMG/M
3300031708|Ga0310686_108993110All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria866Open in IMG/M
3300031748|Ga0318492_10726123All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria533Open in IMG/M
3300031778|Ga0318498_10277685All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria753Open in IMG/M
3300031779|Ga0318566_10191046All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas1016Open in IMG/M
3300031831|Ga0318564_10221422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas841Open in IMG/M
3300031879|Ga0306919_10545111All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales895Open in IMG/M
3300031912|Ga0306921_11916635All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria634Open in IMG/M
3300031938|Ga0308175_100756726All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1059Open in IMG/M
3300031943|Ga0310885_10362366All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria764Open in IMG/M
3300032041|Ga0318549_10562547All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae512Open in IMG/M
3300032063|Ga0318504_10588820All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria534Open in IMG/M
3300032067|Ga0318524_10672059All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria546Open in IMG/M
3300033551|Ga0247830_10413501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1051Open in IMG/M
3300034196|Ga0370503_0099310All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales988Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil22.12%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.69%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.77%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.85%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.85%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.88%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.88%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.88%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil2.88%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.92%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.92%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.92%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.92%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.96%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.96%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.96%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.96%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.96%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.96%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.96%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.96%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.96%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.96%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.96%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.96%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.96%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.96%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated0.96%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001173Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002239Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2Host-AssociatedOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009075Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009649Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021860Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024186Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026217Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)EnvironmentalOpen in IMG/M
3300026281Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026683Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN352 (SPAdes)EnvironmentalOpen in IMG/M
3300027334Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027528Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027684Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300028145Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04EnvironmentalOpen in IMG/M
3300028714Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028879Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3EnvironmentalOpen in IMG/M
3300029442Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM13EnvironmentalOpen in IMG/M
3300029944II_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030763Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030878Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034196Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_18EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI11643J11755_1072662423300000787SoilMDSPRDDMQSLPEGIDALRALVLTMMSERDALALERDTL
JGI1027J12803_10959915323300000955SoilMDSPRDDMQSLPEDIEALRALVLTTMSERDATLAERDVLALERD
JGI12669J13542_10525323300001173Forest SoilVTDSPRDDLESLPEGIEALRALVLRTIADRDATLVERDAAVTERD
JGI12053J15887_1050352523300001661Forest SoilVTDSHPDIPQSLPDDIETLRALVLATFVERDAVVSERDTLLAQNDRLR
JGI24034J26672_1010918423300002239Corn, Switchgrass And Miscanthus RhizosphereMHTVPGAMQSLPESVEALRALVLATVAERDAAVIERDTLLAQN
Ga0062384_10107132313300004082Bog Forest SoilVTDSLSDKMQTLPPDTEALRALVLATVAERDAAVTERDVLQA
Ga0062386_10166760423300004152Bog Forest SoilMDSTPGNMQSLPEDVEALRALVLAIFVERDAAVTERDTLQAQNDRLRHLLL
Ga0070675_10186878713300005354Miscanthus RhizosphereMDSPRDDMQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRLRHLLLQLRR
Ga0070714_10055838413300005435Agricultural SoilMDSPCDDMQSLPEGIDALRALVLTTMSERDALALERDTLQTQNDR
Ga0068867_10139350833300005459Miscanthus RhizosphereVTDSPRDDMQSLPDGIEALQALLLTMMSERDTTLAELDAAVTERDI
Ga0068853_10060849113300005539Corn RhizosphereMHTVPGAMQSLPESVEALRALVLATVAERDAAVIERDTLLAQNDRLRHL
Ga0068854_10044502443300005578Corn RhizosphereVMDSPRDDMQSLPDGIEALQALLLTMMSERDTTLAELDAAVTE
Ga0068852_10160910613300005616Corn RhizosphereMDSPRDDMQSLPEGIDALRALVLTMMSERDALALERDTLQTQN
Ga0068859_10081310933300005617Switchgrass RhizosphereVMHTVPNAMQSLPESVEALRALVLATVAERDAAVIERDTLLAQND
Ga0068859_10150562113300005617Switchgrass RhizosphereMDSPRDDMQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRLRHLLLQL
Ga0080026_1006928313300005952Permafrost SoilMDSPRDDLQSLPEGIEALRALVLTTMSERDVAVTERDILLAQNDR
Ga0075029_10042227413300006052WatershedsVIDSPSENMQNLPQDAEALRALVLATLAERDAAVTERDTLL
Ga0075026_10033017133300006057WatershedsMDSQRDDMQSLPEGIEALRALVLTTMSERDAAVTERDTLLAQNDRLRHLL
Ga0075017_10113601933300006059WatershedsVIDSPNENLQSLPQDAEALRALVLATLAERDAAVTERDTLLAQNDRL
Ga0097621_10030256743300006237Miscanthus RhizosphereVTDSLQINLQSLPEDTEALRALVLATFAERDTTIAE
Ga0068871_10109482413300006358Miscanthus RhizosphereMDSPRDDMQSLPDGIEALQALLLTMMSERDTTLAELDAAVTERDILLAQND
Ga0073928_1092826633300006893Iron-Sulfur Acid SpringMDSPRDDMQSLPEGIEALRALVLATMSERDAAVTERDILLAQNDRLR
Ga0105090_1024052013300009075Freshwater SedimentMSDSSPDNMQSLPGTVEALRALVLAMFAERDAAVTERDTLLTQNDLLRHLPLKLTRMHF
Ga0116229_1129538513300009500Host-AssociatedMDSPSTDISGLPDDLAALRALVLATLVERDAAVTERDLLLAQND
Ga0116133_114740713300009623PeatlandMQSLPEDAEALRALILATFAERDAAVTERDILQAQND
Ga0105855_110633613300009649Permafrost SoilMDSPRDDLQSLPEGIEALRALVLTTMSERDVAVTERDILLAQNDRLRHL
Ga0126309_1076225513300010039Serpentine SoilVIDSPPDNTQSLPETVKALRALVLATFAERDAAVTERDAL
Ga0134128_1082762633300010373Terrestrial SoilMDSPREDMHSLPEGLEALRALVLTTMSERDATLAERDALALERDTPQ
Ga0134123_1049293143300010403Terrestrial SoilMHTLPGAMQSLPESVEALRALVLATVAERDAAVIERD
Ga0150985_10206182613300012212Avena Fatua RhizosphereVTDSAPDTTQSLPESVEALRALVLATFAERDAALSERDTLLTQ
Ga0137398_1056795013300012683Vadose Zone SoilMDSRRDDMQSLPDDIEVLRALVLTTMAERDALAVERDSLYQSA*
Ga0137413_1029679213300012924Vadose Zone SoilSRVTDSLQHNVEGLPTDAEALRALVLATVAERALAS*
Ga0137407_1072809313300012930Vadose Zone SoilMDSRRDDMQSLPEGIEALRALVLTTIAERDATLVERDAAVTERDILLAQNDRL
Ga0163162_1064480513300013306Switchgrass RhizosphereMHTVPNAMQSLPESVEALRALVLATVAERDAAVLERDTL
Ga0157375_1067880513300013308Miscanthus RhizosphereMDSPRDDMQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRLRHL
Ga0181534_1064531313300014168BogVTDSVPDNTQSLPETVEALRALVLATFAERDAAVTERDTLLTQNDRLRHLLL
Ga0181531_1067595933300014169BogMQSLPEDAEALRALILATFAERDAAVTERDILQAQ
Ga0182016_1031993333300014493BogVTDSLSDNMQSLPQDAEALRALILATFAERDAAITERDLL*
Ga0182015_1058808333300014495PalsaMQSLPEDAEALRALILATFAERDAAVTERDILQAQNDRLR
Ga0182032_1162589613300016357SoilMDSPRDDMQSLPEGTDALRALVLAMMSERDATLAERDAL
Ga0182038_1044592313300016445SoilMDSPRDDIQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRL
Ga0187879_1057979913300017946PeatlandVIDSPHDMPSLPKDAEALRALVLATFVERDTAVSERDTLLAQNDRLRHLLLK
Ga0187867_1027011233300018033PeatlandVTDSLQDNMQSLPEDAEALRALILATFAERDAAVTERDILQAQN
Ga0187771_1092210713300018088Tropical PeatlandVTDSLQDTAPNLPDDIEALRALVLATFAERDAAVSERDILQTQNDRLRHLL
Ga0182025_104975913300019786PermafrostMQSLPEDAEALRALILATFAERDAAINERDMPRSTSG
Ga0210407_1086972933300020579SoilMDSPRDDMQSLPEGIEALRALVLTTMSERDAAVTERDTLLAQNDRLRHLLLQLKRL
Ga0210403_1102970313300020580SoilVMDSPRTDLQSLPEGIEALRALVLTMMSERDAAVTERDVLLAQNDR
Ga0210404_1001969213300021088SoilMDSQRDDMQSLPEGIEALRALVLTTMSERDAAVTERDTLLAQN
Ga0210404_1040761313300021088SoilVTDSPRDDLESLPEGIEALRALVLRTIADRDATLVERDAAVTERDILLAQNDRRIASSRN
Ga0210404_1048202713300021088SoilMDSPRDDMQSLPEGIEALRALVLATMSERDAAVTERDTL
Ga0210405_1041578013300021171SoilMQSLPETVEALRALVLATFAERDAVVTERDTLLTQNDRLRYSY
Ga0210388_1051703433300021181SoilMQSLPETVEALRALVLATFAERDAVVTERDTLLTQNDRLRHL
Ga0210383_1039989723300021407SoilMDSQRDDMQSLPDGIEALRTLVLTTMSERDAAVTERDILLAQNDRLRHLLLQLKRV
Ga0210394_1071891533300021420SoilVMDSPRDDMQSLPEGIEALRALVLTTMSERDATLAERDVA
Ga0182009_1065239323300021445SoilMDSPRDDMQSLPEGNEALRALVLTMMSEREATLAERDALALERDILQT
Ga0210410_1148960313300021479SoilVIDSPNENLQSLPQDAEALRALVLATLAERDAAVTERDTLLAQN
Ga0213851_137140113300021860WatershedsMDSPRDDMQSLPECIDALRALVLATMSERDALALERDTLQTQNDR
Ga0247688_104043313300024186SoilVTDSLQENTQTLPQDAEALRALILATFAERDAAVTE
Ga0207656_1032365213300025321Corn RhizosphereMDSPRDDMQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRLRHLLLQ
Ga0207710_1022045333300025900Switchgrass RhizosphereMHTVPNAMQSLPESVEALRALVLATVAERDAAVIERDTLLAQNDRLR
Ga0207671_1129483423300025914Corn RhizosphereMDSPRDDMQSLPEGIEALRALVLTTIAERDATLVERDAAVTERDILLAQNDRLR
Ga0207686_1036812613300025934Miscanthus RhizosphereVMDSPRDDMQSLPDGIEALQALLLTMMSERDTTLAELDAAVT
Ga0207689_1068814433300025942Miscanthus RhizosphereMDSPRDDMQSLPEGIDALRALVLTMMSERDALALE
Ga0209871_103104343300026217Permafrost SoilVMDSPRDDMQTLPENIEALRALVLTMMSERDAAVTERYILLAHNDRLRHL
Ga0209863_1011910933300026281Prmafrost SoilVTDSPSDTMQSLPETIEALRALVLATFAERDAVVTERDTLLTQND
Ga0209839_1013651533300026294SoilVTDSLHDNMQSLPQDAEALRALILATFAERDATIAERDAAVT
Ga0208210_10076623300026683SoilMDSPCDDMQSLPEGIDALRALVLTTMSERDALALERDTLQ
Ga0209529_108793023300027334Forest SoilVTDSPSDTMQSLPETIEALRALVLATFAERDAAVTERDTLLTQNDRL
Ga0208985_109369523300027528Forest SoilVTDSHPDIPQSLPDDIETLRALVLATFVERDAVVSERDTLLAQNDR
Ga0209626_118367013300027684Forest SoilMDSQRDDMQSLPDGIEALRTLVLTTMSERDAAVTERDILLAQNDRLR
Ga0209530_118145123300027692Forest SoilVTDSAPDNTQSLPETLEALRALALATFTDRDAVVIERDTLLTQND
Ga0209038_1018249533300027737Bog Forest SoilVTDSPRDDLESLPEGIEALRALVLRTIADRDATLVERDAAVTERDIL
Ga0247663_104134723300028145SoilVTDSLQENTQTLPQDAEALRALILATFAERDAAVTERDILQAQNDRLRRKRSSDALV
Ga0307309_1007872213300028714SoilMDSPRDDMQSLPEGIEALRALVLTTIAERDATLVERDAAVTERDILLAQNDRL
Ga0307319_1026224913300028722SoilMDSPRDDMQSLPEGIEALRALVLTTIAERDATLVERDAAVTERDILLAQN
Ga0307286_1036682623300028876SoilMDSPRDDMQSLPDGIEALQALLLTMMSERDTTLAELDAAVTERD
Ga0302229_1032366743300028879PalsaVTDSLQDNMQSLPEDAEALRALILATFAERDAAVTERDILQ
Ga0239579_104559313300029442Freshwater LakeMIDSPPDNKQSLPETIEALRALVLATFAERDALVSERDTLLT
Ga0311352_1035308243300029944PalsaMQSLPQDAEALRALILATFAERDAAVTERDILQAQNDRLRH
Ga0302177_1020618613300030053PalsaVTDSLQDNMQSLPEDAEALRALILATFAERDAAVTERDILQAQNDRLRHLL
Ga0311355_1052125733300030580PalsaVMDSPRTDLQSLPEGVEALRALVLTTISERDATLAERDALALERDILLAQ
Ga0265763_104567613300030763SoilMDAPRDDLQNLPESTEALRALVLTMMSERDAAVTERDILLAQNDRLRHLL
Ga0265770_114345023300030878SoilVIDSLPDNMQSLPETVEALRALVLATFAERDAVVTERD
Ga0265760_1032783613300031090SoilMDSPRDDMQSLPEGIEALRALVLTTMSERDAAVTERDT
Ga0302325_1154513933300031234PalsaMDSPRTDLQSLPAGIEALRALVLTTISERDATLAERDALALERDILLAQNDRLR
Ga0318516_1021164543300031543SoilMDSPRDDLQNLPADIEALRALVLTTLSERDALALERDT
Ga0310915_1030288933300031573SoilMDSRRVDTQSLPEDAAALRALVLATIAERDAAVSERDTLLAQNDRLRHL
Ga0318542_1060118713300031668SoilMDSPRDDIQSLPEGIDALRALVLTMMSERDALALERDTLQT
Ga0318574_1080515423300031680SoilMDSPRDDLQNLPADIEALRALVLTTLSERDALALERD
Ga0310686_10541116023300031708SoilVTDSLSDKMQSLPQDVEALRALILATFAERDAAVTERDVLQAQND
Ga0310686_10899311033300031708SoilVTDSLSDTMQSLPETIEALRALVLATFAERDAAVTERDTLLTQNDRLRHLL
Ga0318492_1072612313300031748SoilMDSPRDDLQSLPEGIDALQALVLTTMSERDALALERDTLQTQNDRLRHLLLQLR
Ga0318498_1027768533300031778SoilMDSPRDDLQNLPADIEALRALVLTTLSERDALALERDTLQTQNDRLRHLLLQL
Ga0318566_1019104613300031779SoilMDSPRDDIQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRLRHLLLQLRR
Ga0318564_1022142213300031831SoilMDSPRDDIQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRLRHLL
Ga0306919_1054511113300031879SoilMDSPRDDIQSLPEGIDALRALVLTMMSERDALALERDTLQTQN
Ga0306921_1191663513300031912SoilMDSRRDDMQSLPEGIDALRALVLATMSERDALALERDTLQTQNDRLRHLLLQLR
Ga0308175_10075672613300031938SoilMDSPREDMQSLPESIEALRALVLTTMSERDATLAERDALALERDTLQT
Ga0310885_1036236613300031943SoilMHTVPDAMQSLPESVEALRALVLATVAERDAAVIERNTLLAQND
Ga0318549_1056254723300032041SoilMDSPRDDIQSLPEGIDALRALVLTMMSERDALALERDTLQTQNDRLRHL
Ga0318504_1058882023300032063SoilMDSPRDDIQSLPEGIDALRALVLTMMSERDALALERDT
Ga0318524_1067205913300032067SoilMDSPRDDLRSLPEGIDALRALVLTTMSERDALALERD
Ga0247830_1041350113300033551SoilMDSPRDDMQSLPEGIDALRALVLTMMSERDALALERDTLQT
Ga0370503_0099310_2_1093300034196Untreated Peat SoilMTDSPPDNTQSLPETVQALRALVLATLAERDAPVTE

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.