NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097268

Metagenome / Metatranscriptome Family F097268

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097268
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 57 residues
Representative Sequence MGRIWNGSCEDWLHGDEPHGFDLPDADDYAPMEQWEIDEALADLMADAERIGRLDD
Number of Associated Samples 71
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 90.38 %
% of genes near scaffold ends (potentially truncated) 22.12 %
% of genes from short scaffolds (< 2000 bps) 71.15 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.846 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(42.308 % of family members)
Environment Ontology (ENVO) Unclassified
(81.731 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.385 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.93%    β-sheet: 0.00%    Coil/Unstructured: 66.07%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF12957DUF3846 16.35
PF08273Prim_Zn_Ribbon 12.50
PF13155Toprim_2 10.58
PF11753DUF3310 0.96
PF13662Toprim_4 0.96
PF00145DNA_methylase 0.96
PF00476DNA_pol_A 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG4643Uncharacterized domain associated with phage/plasmid primaseMobilome: prophages, transposons [X] 12.50
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.96
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A53.85 %
All OrganismsrootAll Organisms46.15 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10012231All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium4449Open in IMG/M
3300000115|DelMOSum2011_c10078628All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1155Open in IMG/M
3300000116|DelMOSpr2010_c10129219Not Available898Open in IMG/M
3300000116|DelMOSpr2010_c10145428Not Available819Open in IMG/M
3300000116|DelMOSpr2010_c10209941Not Available618Open in IMG/M
3300000117|DelMOWin2010_c10051885All Organisms → Viruses → Predicted Viral1803Open in IMG/M
3300000117|DelMOWin2010_c10117698Not Available935Open in IMG/M
3300000117|DelMOWin2010_c10168106Not Available705Open in IMG/M
3300005588|Ga0070728_10486254Not Available647Open in IMG/M
3300005837|Ga0078893_10687147Not Available7179Open in IMG/M
3300005837|Ga0078893_11098325All Organisms → cellular organisms → Bacteria6929Open in IMG/M
3300005837|Ga0078893_11918882All Organisms → Viruses → Predicted Viral1042Open in IMG/M
3300006025|Ga0075474_10002274Not Available8101Open in IMG/M
3300006025|Ga0075474_10033914All Organisms → Viruses → Predicted Viral1785Open in IMG/M
3300006025|Ga0075474_10040557Not Available1602Open in IMG/M
3300006026|Ga0075478_10014355All Organisms → Viruses → Predicted Viral2694Open in IMG/M
3300006621|Ga0101441_110123All Organisms → Viruses → Predicted Viral2812Open in IMG/M
3300006752|Ga0098048_1065432All Organisms → Viruses → Predicted Viral1126Open in IMG/M
3300006802|Ga0070749_10043196All Organisms → Viruses → Predicted Viral2767Open in IMG/M
3300006802|Ga0070749_10189770All Organisms → Viruses → Predicted Viral1181Open in IMG/M
3300006802|Ga0070749_10230977Not Available1052Open in IMG/M
3300006810|Ga0070754_10193880Not Available950Open in IMG/M
3300006916|Ga0070750_10032374All Organisms → Viruses → Predicted Viral2593Open in IMG/M
3300006916|Ga0070750_10496979Not Available500Open in IMG/M
3300006919|Ga0070746_10063337All Organisms → Viruses → Predicted Viral1903Open in IMG/M
3300006919|Ga0070746_10112818All Organisms → Viruses → Predicted Viral1348Open in IMG/M
3300007229|Ga0075468_10133651Not Available761Open in IMG/M
3300007229|Ga0075468_10137640Not Available747Open in IMG/M
3300007229|Ga0075468_10165976Not Available661Open in IMG/M
3300007234|Ga0075460_10243140Not Available602Open in IMG/M
3300007276|Ga0070747_1102233All Organisms → Viruses → Predicted Viral1056Open in IMG/M
3300007276|Ga0070747_1247649Not Available619Open in IMG/M
3300007346|Ga0070753_1268110Not Available616Open in IMG/M
3300007539|Ga0099849_1091300Not Available1221Open in IMG/M
3300007539|Ga0099849_1135952Not Available959Open in IMG/M
3300007539|Ga0099849_1189828Not Available777Open in IMG/M
3300009357|Ga0103827_1012780All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium536Open in IMG/M
3300009433|Ga0115545_1241230Not Available608Open in IMG/M
3300010149|Ga0098049_1097587Not Available921Open in IMG/M
3300010300|Ga0129351_1361655Not Available543Open in IMG/M
3300010392|Ga0118731_106242883All Organisms → Viruses → Predicted Viral2172Open in IMG/M
3300011127|Ga0151665_1053656Not Available664Open in IMG/M
3300012954|Ga0163111_12200252Not Available558Open in IMG/M
3300017697|Ga0180120_10003866Not Available7444Open in IMG/M
3300017697|Ga0180120_10379827Not Available556Open in IMG/M
3300017708|Ga0181369_1008868All Organisms → Viruses → Predicted Viral2604Open in IMG/M
3300017714|Ga0181412_1019702All Organisms → Viruses → Predicted Viral1904Open in IMG/M
3300017721|Ga0181373_1000571Not Available7925Open in IMG/M
3300017721|Ga0181373_1078777Not Available586Open in IMG/M
3300017727|Ga0181401_1010126All Organisms → Viruses → Predicted Viral2996Open in IMG/M
3300017727|Ga0181401_1168576Not Available527Open in IMG/M
3300017729|Ga0181396_1006714All Organisms → Viruses → Predicted Viral2328Open in IMG/M
3300017729|Ga0181396_1014995All Organisms → Viruses → Predicted Viral1545Open in IMG/M
3300017742|Ga0181399_1003867Not Available4756Open in IMG/M
3300017742|Ga0181399_1028372All Organisms → Viruses → Predicted Viral1530Open in IMG/M
3300017744|Ga0181397_1148866Not Available599Open in IMG/M
3300017749|Ga0181392_1158204Not Available662Open in IMG/M
3300017755|Ga0181411_1107520Not Available821Open in IMG/M
3300017758|Ga0181409_1017227All Organisms → Viruses → Predicted Viral2352Open in IMG/M
3300017763|Ga0181410_1074405All Organisms → Viruses → Predicted Viral1009Open in IMG/M
3300017771|Ga0181425_1166860Not Available695Open in IMG/M
3300017779|Ga0181395_1142582Not Available757Open in IMG/M
3300019730|Ga0194001_1042758Not Available591Open in IMG/M
3300019741|Ga0194020_1050873Not Available572Open in IMG/M
3300019747|Ga0193978_1034705Not Available683Open in IMG/M
3300019749|Ga0193983_1089037Not Available510Open in IMG/M
3300019750|Ga0194000_1002955Not Available1663Open in IMG/M
3300020385|Ga0211677_10322535Not Available614Open in IMG/M
3300021368|Ga0213860_10029489Not Available2302Open in IMG/M
3300021373|Ga0213865_10007734All Organisms → cellular organisms → Bacteria6269Open in IMG/M
3300021373|Ga0213865_10133338All Organisms → Viruses → Predicted Viral1290Open in IMG/M
3300021425|Ga0213866_10018212All Organisms → Viruses → Predicted Viral4212Open in IMG/M
3300021425|Ga0213866_10168521All Organisms → Viruses → Predicted Viral1152Open in IMG/M
3300022050|Ga0196883_1003741All Organisms → Viruses → Predicted Viral1742Open in IMG/M
3300022050|Ga0196883_1005843All Organisms → Viruses → Predicted Viral1429Open in IMG/M
3300022057|Ga0212025_1082172Not Available554Open in IMG/M
3300022071|Ga0212028_1104543Not Available526Open in IMG/M
3300022178|Ga0196887_1060509Not Available937Open in IMG/M
3300022187|Ga0196899_1096821Not Available880Open in IMG/M
3300022306|Ga0224509_10035605All Organisms → Viruses → Predicted Viral1660Open in IMG/M
(restricted) 3300024059|Ga0255040_10049253All Organisms → Viruses → Predicted Viral1549Open in IMG/M
3300025084|Ga0208298_1051086Not Available809Open in IMG/M
3300025085|Ga0208792_1002705All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium5073Open in IMG/M
3300025132|Ga0209232_1020751All Organisms → Viruses → Predicted Viral2584Open in IMG/M
3300025132|Ga0209232_1181403Not Available653Open in IMG/M
3300025141|Ga0209756_1026159All Organisms → Viruses → Predicted Viral3237Open in IMG/M
3300025151|Ga0209645_1019567All Organisms → Viruses → Predicted Viral2593Open in IMG/M
3300025543|Ga0208303_1019096All Organisms → Viruses → Predicted Viral1973Open in IMG/M
3300025610|Ga0208149_1009204All Organisms → Viruses → Predicted Viral3064Open in IMG/M
3300025652|Ga0208134_1050166Not Available1331Open in IMG/M
3300025652|Ga0208134_1077716All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium969Open in IMG/M
3300025653|Ga0208428_1014530All Organisms → Viruses → Predicted Viral2678Open in IMG/M
3300025671|Ga0208898_1038761Not Available1849Open in IMG/M
3300025674|Ga0208162_1013004Not Available3414Open in IMG/M
3300025674|Ga0208162_1015716All Organisms → Viruses → Predicted Viral3030Open in IMG/M
3300025674|Ga0208162_1019553Not Available2635Open in IMG/M
3300025674|Ga0208162_1021936All Organisms → Viruses → Predicted Viral2446Open in IMG/M
3300025769|Ga0208767_1070840All Organisms → Viruses → Predicted Viral1510Open in IMG/M
3300025769|Ga0208767_1093320All Organisms → Viruses → Predicted Viral1226Open in IMG/M
3300025806|Ga0208545_1169269Not Available507Open in IMG/M
3300025889|Ga0208644_1094122All Organisms → Viruses → Predicted Viral1493Open in IMG/M
3300025889|Ga0208644_1193690Not Available890Open in IMG/M
3300032088|Ga0315321_10002862All Organisms → cellular organisms → Bacteria13407Open in IMG/M
3300034374|Ga0348335_053045All Organisms → Viruses → Predicted Viral1547Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous42.31%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater14.42%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine10.58%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine7.69%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment4.81%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater4.81%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water3.85%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.88%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water0.96%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.96%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.96%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.96%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.96%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine0.96%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300005588Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006621Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time pointEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300009357Microbial communities of water from the North Atlantic ocean - ACM13EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300011127Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.02EnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300019730Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MGEnvironmentalOpen in IMG/M
3300019741Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_6-7_MGEnvironmentalOpen in IMG/M
3300019747Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_5-6_MGEnvironmentalOpen in IMG/M
3300019749Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_4-5_MGEnvironmentalOpen in IMG/M
3300019750Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MGEnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300022050Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)EnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022071Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022306Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24EnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1001223133300000115MarineMGRNWNGSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADNERIEEKLK*
DelMOSum2011_1007862823300000115MarineMGRNWNGSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADNERIEEKDNDVIR
DelMOSpr2010_1012921943300000116MarineMGRIWNGSCEDWLHGDEPHGFDLPDADDYAPMEQWEIDEAVADLMADAERIERSDD*
DelMOSpr2010_1014542833300000116MarineMGRIWNGSGEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADAERIGRLDD*
DelMOSpr2010_1020994113300000116MarineMGRIWNGSCEDWLHGDEPHGFDYDLPDADDYAPMEQWEIDEALADLMADAERIGRLDD*
DelMOWin2010_1005188523300000117MarineMGRIWNGSCEDWLHGDEPHGFDLPDADDYEPMEQWEIDEAIADLMADAERIGRLDD*
DelMOWin2010_1011769813300000117MarineMGRNWNGSCEDWLHGDEPHGFDLPDADEYPPMEQWEIDEAKAEILA
DelMOWin2010_1016810623300000117MarineMGRTWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADLMADAERIGRLDD*
Ga0070728_1048625413300005588Marine SedimentEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADAERIERLDD*
Ga0078893_10687147133300005837Marine Surface WaterMMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDDERIEEKNDDVIR*
Ga0078893_11098325133300005837Marine Surface WaterMGRTWNGSCEDWLHGDEPYGFDYTLPDADDYAPMEQWEIDEAKADILADEDRLGRLSDD*
Ga0078893_1191888213300005837Marine Surface WaterGSCEDWLHGDEPHGFDLPDADDYAPMEQWEIDEALADLMADADRLGR
Ga0075474_10002274113300006025AqueousMGRIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEAIADLMADADRLGRLDD*
Ga0075474_1003391413300006025AqueousMGRIWNGSCEDWLHGDEPYGLDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD*
Ga0075474_1004055733300006025AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADNERIEEKLK*
Ga0075478_1001435563300006026AqueousMNRIWNGSCEDWLHGDEPYGYDLPDADDYEPMEQWEIDEALADLMADAERIGRLDD*
Ga0101441_11012343300006621Marine Surface WaterMGRIWNGSCEDWLHGDEPHGFDLPDADDYAPMEQWEIDEALADLMADAERIGRLDD*
Ga0098048_106543243300006752MarineMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADDERIKEKSNDVIR
Ga0070749_1004319683300006802AqueousMGRTWNGSCEDWLHGDEPYGFDYDLPDADDYAPMEQWEIDEAVADILADEDRLGRLDND*
Ga0070749_1018977023300006802AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADNERIEEKDNDVIR
Ga0070749_1023097743300006802AqueousMNRIWNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEALADLMADAERIGRLDD*
Ga0070754_1019388023300006810AqueousMSRNWNGSCEDWLHGDEPHGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKNDDVIR*
Ga0070750_10032374103300006916AqueousMGRIWNGSCEDWLHGDEPHGLDLPEADDYAPMEQWEIDEAIADLMADAERIGRLDD*
Ga0070750_1049697923300006916AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIERIEEKLK*
Ga0070746_1006333733300006919AqueousMNRIWNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADADRLGRLDD*
Ga0070746_1011281863300006919AqueousMGRIWNGSCEDWLHGDEPHGLDLPDAGDYAPMEQWEIDEAIADLMADADRL
Ga0075468_1013365123300007229AqueousMVTGRNWNGSCEDWLHGDEPYGFDLPDADDYEPMEQWEIDEAKAEILADEDRAERADV*
Ga0075468_1013764013300007229AqueousGEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADAERIGRVDD*
Ga0075468_1016597613300007229AqueousMGRIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD*
Ga0075460_1024314023300007234AqueousMNRIWNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADAERIGRLD
Ga0070747_110223313300007276AqueousMGRIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADMRGDDKW
Ga0070747_124764923300007276AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKDNDVIR*
Ga0070753_126811033300007346AqueousMGRIWNGSGEDWLHGDEPHGFDLPDADDYEPMEQWEIDEAIADLMADAERIGRLDD*
Ga0099849_109130023300007539AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKNDDVIR*
Ga0099849_113595233300007539AqueousMGRNWNGSCEDWLHGDEPYGYDLPDADDYEPMEQWEIDEALADILADEERLGKLDD*
Ga0099849_118982833300007539AqueousMNRIWNGSCEDWLHGDEPYGYDLPDADDYEPMEQWEIDEAIADLMADAERIGRLDD*
Ga0103827_101278023300009357River WaterMVTGRNWNGSCEDWLHGDEPYGFDLPDADDYEPMEQWEIDEAKAEILADEDRAERSVI*
Ga0115545_124123033300009433Pelagic MarineMGRNWNGSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADIENDNERIEEKDNDVIR*
Ga0098049_109758723300010149MarineMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADEERIEEKSNDVIR
Ga0129351_136165513300010300Freshwater To Marine Saline GradientMGRTWNGSCEDWLHGDEPYGYDLPDADDYVPMEQWEIDEALADILADEERLGKLDD*
Ga0118731_10624288343300010392MarineMGRIWNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADADRLGRLDD*
Ga0151665_105365633300011127MarineMGRIWIGSCEDWLHGDAPHGFDLPDADDYAPMAQWEIYEALADLMADAERIERLDEAKAEILADEERIKEKNDDVIR*
Ga0163111_1220025223300012954Surface SeawaterMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKNNDVIR*
Ga0180120_10003866123300017697Freshwater To Marine Saline GradientMATGRTWNGSCEDWLHGDEPYGFDLPDADDYEPMEQWEIDEAKAEILADEDRAERADV
Ga0180120_1037982713300017697Freshwater To Marine Saline GradientMGRNWNGSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADIENDNERIEEKNDDVIR
Ga0181369_100886843300017708MarineVMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILAEIDKDNERIKEKNDDVIR
Ga0181412_101970273300017714SeawaterWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0181373_100057173300017721MarineMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILAEIDKDNERIKEKNDDVIR
Ga0181373_107877713300017721MarineIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADLMADADRLGRLDD
Ga0181401_101012613300017727SeawaterMGRTWNGSCEDWLHGDEPYGLDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0181401_116857623300017727SeawaterMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKSNDVIR
Ga0181396_100671443300017729SeawaterMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADEERIKEKNDDVIR
Ga0181396_101499533300017729SeawaterMGRIWNGSCEDWLHGDEPHGFDYDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0181399_100386743300017742SeawaterMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADEERIEEKNDDVIR
Ga0181399_102837243300017742SeawaterMGRIWNGSCEDWLHGDEPHGFDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0181397_114886633300017744SeawaterMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADEE
Ga0181392_115820433300017749SeawaterGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIKEKNDDVIR
Ga0181411_110752013300017755SeawaterMGRTWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0181409_101722723300017758SeawaterMGRTWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADLMADAERIGRLDD
Ga0181410_107440533300017763SeawaterMGRIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEAIADLMTDADRLGRLDD
Ga0181425_116686033300017771SeawaterGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADEERIKEKNDDVIR
Ga0181395_114258213300017779SeawaterMGRTWNGSCEDWLHGDEPHGFDLPDADDYAPMEQWEIDEALADLMADADRIGRL
Ga0194001_104275833300019730SedimentMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKDNDV
Ga0194020_105087333300019741SedimentMGRNWNGSCEDWLHGDEPHGFDLPDADDYPPMEQWEIDEAKAEILADIENDNESTEEKLK
Ga0193978_103470513300019747SedimentMGRNWNGSCEDWLHGDEPHGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKLK
Ga0193983_108903723300019749SedimentMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKLKXCYSVEC
Ga0194000_100295513300019750SedimentMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKLK
Ga0211677_1032253513300020385MarineMGRIWNGSGEDWLHGDEPHGFDLPDADDYAPMEQWEIDEALADLMADADRLGRLDD
Ga0213860_1002948933300021368SeawaterMMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKNDDVIR
Ga0213865_1000773473300021373SeawaterMGRIWNGSCEDWLHGDEPYGYDLPDADDYEPMEQWEIDEAVAEILADEERLGRLDD
Ga0213865_1013333843300021373SeawaterMGRIWNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADADRLGRLDD
Ga0213866_1001821273300021425SeawaterMGRNWNGSCEDWLHGDEPYGYDLPDADDYEPMEQWEIDEALADILADEERLGRLDD
Ga0213866_1016852113300021425SeawaterNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADADRLGRLDD
Ga0196883_100374163300022050AqueousMGRIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEAIADLMADADRLGRLDD
Ga0196883_100584333300022050AqueousMGRIWNGSCEDWLHGDEPYGLDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0212025_108217223300022057AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADNERIEEKLK
Ga0212028_110454313300022071AqueousMNRIWNGSCEDWLHGDEPYGYDLPDADYYEPMEQWEIDEALADLMADAERIGRLDD
Ga0196887_106050933300022178AqueousMGRNWNGSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADIENDNERIEEKLK
Ga0196899_109682133300022187AqueousMSRNWNGSCEDWLHGDEPHGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKNDDVIR
Ga0224509_1003560533300022306SedimentMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADEERIKEKNDDVIR
(restricted) Ga0255040_1004925333300024059SeawaterMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADDERIKEKNDDVIR
Ga0208298_105108623300025084MarineMGRNWNGSCEDWLHGDEPHGFDLPDADDYPPMEQWEIDEAKAEILADEERIEEKSNDVIR
Ga0208792_100270533300025085MarineMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADEERIEEKSNDVIR
Ga0209232_102075153300025132MarineMDRTWNGSCEDWLHGDEPHGFDYDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0209232_118140313300025132MarineMGRIWNGSCEDWLHGDEPYGLDLPDADDYAPMEQWEIDEALADLMADADRIG
Ga0209756_102615933300025141MarineMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKNNDVIR
Ga0209645_101956793300025151MarineMGRNWNGSCEDWLHGDEPYGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKLK
Ga0208303_101909633300025543AqueousMVTGRNWNGSCEDWLHGDEPYGFDLPDADDYEPMEQWEIDEAKAEILADEDRAERADV
Ga0208149_100920473300025610AqueousMNRIWNGSCEDWLHGDEPYGYDLPDADDYEPMEQWEIDEALADLMADAERIGRLDD
Ga0208134_105016653300025652AqueousMGRNWNGSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADIDNDNERI
Ga0208134_107771633300025652AqueousSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADIENDNERIEEKLK
Ga0208428_101453013300025653AqueousMGRIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEAIADLMADADR
Ga0208898_103876123300025671AqueousMGRNWNGSCEDWLHGDEPHGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKLK
Ga0208162_1013004103300025674AqueousMGRNWNGSCEDWLHGDEPYGFDLPDSDDYPPMEQWEIDEAKAEILADIDNDNERIEEKLK
Ga0208162_101571663300025674AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNESIEEKLK
Ga0208162_101955323300025674AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIENDNERIEEKNDDVIR
Ga0208162_102193633300025674AqueousMGRNWNGSCEDWLHGDEPYGYDLPDADDYEPMEQWEIDEALADILADEERLGKLDD
Ga0208767_107084053300025769AqueousMGRNWNGSCEDWLHGDEPYGFDLPDADDYPPMEQWEIDEAKAEILADIERIEEKLK
Ga0208767_109332063300025769AqueousMNRIWNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADAERIGRLDD
Ga0208545_116926933300025806AqueousMGRIWNGSCEDWLHGDEPHGLDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0208644_109412223300025889AqueousMNRIWNGSCEDWLHGDEPHGLDLPDADDYEPMEQWEIDEAIADLMADAERIGRVDD
Ga0208644_119369013300025889AqueousMGRTWNGSCEDWLHGDEPYGFDYDLPDADDYAPMEQWEIDEAVADILADEDRLGRLDND
Ga0315321_10002862183300032088SeawaterMGRTWNGSCEDWLHGDEPHGFDLPDADDYAPMEQWEIDEALADLMADADRIGRLDD
Ga0348335_053045_1016_11923300034374AqueousMGRTWNGSCEDWLHGDEPYGFDYTLPDADDYAPMEQWEIDEAKADILADEDRLGRLDD


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