Metagenome / Metatranscriptome Family F096970

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096970
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	73 residues
Representative Sequence	VNRADLVRLVDRLEDEADGYITLEDVERAAASDVSDAIANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW
Number of Associated Samples	72
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.88 %
% of genes near scaffold ends (potentially truncated)	25.96 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.83

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.538 % of family members)
Environment Ontology (ENVO)	Unclassified (38.462 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.808 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.35% β-sheet: 15.69% Coil/Unstructured: 51.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.83
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.83
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SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.15: DNA-binding domain from rap30	d2bbya_	2bby	0.64326
a.4.5.28: MarR-like transcriptional regulators	d1ub9a_	1ub9	0.62367
a.4.5.12: Restriction endonuclease FokI, N-terminal (recognition) domain	d2foka1	2fok	0.62271
a.4.5.65: MukF N-terminal domain-like	d1t98a1	1t98	0.61862
a.4.5.0: automated matches	d4hqma_	4hqm	0.61861

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13399	LytR_C	30.77
PF07853	DUF1648	23.08
PF10882	bPH_5	19.23
PF01202	SKI	0.96
PF00294	PfkB	0.96
PF13439	Glyco_transf_4	0.96
PF01761	DHQ_synthase	0.96
PF00150	Cellulase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.96
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	92.31 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	92.31 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	89.42 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	89.42 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	89.42 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.96 %
Unclassified	root	N/A	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005167\|Ga0066672_10108790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1700	Open in IMG/M
3300005171\|Ga0066677_10158290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1245	Open in IMG/M
3300005171\|Ga0066677_10329538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	874	Open in IMG/M
3300005176\|Ga0066679_10188468	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300005177\|Ga0066690_10445388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	877	Open in IMG/M
3300005177\|Ga0066690_10503307	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300005177\|Ga0066690_10660654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	695	Open in IMG/M
3300005179\|Ga0066684_10841689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	603	Open in IMG/M
3300005181\|Ga0066678_10977885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	550	Open in IMG/M
3300005435\|Ga0070714_101435548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	674	Open in IMG/M
3300005445\|Ga0070708_100083509	All Organisms → cellular organisms → Bacteria	2896	Open in IMG/M
3300005445\|Ga0070708_101944494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	545	Open in IMG/M
3300005446\|Ga0066686_10888585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	586	Open in IMG/M
3300005447\|Ga0066689_10119613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1535	Open in IMG/M
3300005447\|Ga0066689_10341401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	933	Open in IMG/M
3300005447\|Ga0066689_10409354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	848	Open in IMG/M
3300005467\|Ga0070706_100017169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6684	Open in IMG/M
3300005467\|Ga0070706_101211972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	693	Open in IMG/M
3300005468\|Ga0070707_100640170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1026	Open in IMG/M
3300005468\|Ga0070707_102326558	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005471\|Ga0070698_100247501	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300005471\|Ga0070698_101640109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	595	Open in IMG/M
3300005471\|Ga0070698_101938449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300005471\|Ga0070698_102106248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300005518\|Ga0070699_100136658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2162	Open in IMG/M
3300005537\|Ga0070730_10155405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1549	Open in IMG/M
3300005552\|Ga0066701_10188847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1259	Open in IMG/M
3300005554\|Ga0066661_10147701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1437	Open in IMG/M
3300005555\|Ga0066692_10081344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1881	Open in IMG/M
3300005560\|Ga0066670_10484213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	761	Open in IMG/M
3300005561\|Ga0066699_11071500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	556	Open in IMG/M
3300005575\|Ga0066702_10159417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1341	Open in IMG/M
3300005576\|Ga0066708_10053748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2263	Open in IMG/M
3300005586\|Ga0066691_10336526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	893	Open in IMG/M
3300005764\|Ga0066903_100152944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3321	Open in IMG/M
3300005842\|Ga0068858_102102416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300005994\|Ga0066789_10280893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	697	Open in IMG/M
3300006028\|Ga0070717_11785344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	556	Open in IMG/M
3300006032\|Ga0066696_10042922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2497	Open in IMG/M
3300006796\|Ga0066665_11657328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	505	Open in IMG/M
3300006800\|Ga0066660_10135697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1802	Open in IMG/M
3300006800\|Ga0066660_10999778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	672	Open in IMG/M
3300009012\|Ga0066710_102184819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	809	Open in IMG/M
3300009012\|Ga0066710_103768253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M
3300009088\|Ga0099830_11117919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	653	Open in IMG/M
3300009088\|Ga0099830_11400396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	582	Open in IMG/M
3300009089\|Ga0099828_10397212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1243	Open in IMG/M
3300009089\|Ga0099828_11539558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	586	Open in IMG/M
3300009089\|Ga0099828_11791223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	539	Open in IMG/M
3300009090\|Ga0099827_10212569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1613	Open in IMG/M
3300009090\|Ga0099827_10235376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1534	Open in IMG/M
3300009090\|Ga0099827_10354482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1249	Open in IMG/M
3300009090\|Ga0099827_11190208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	662	Open in IMG/M
3300009147\|Ga0114129_10662295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1346	Open in IMG/M
3300009400\|Ga0116854_1016022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	578	Open in IMG/M
3300011269\|Ga0137392_11050960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	668	Open in IMG/M
3300011270\|Ga0137391_10024380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5024	Open in IMG/M
3300011270\|Ga0137391_10833951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	758	Open in IMG/M
3300011270\|Ga0137391_11407870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	543	Open in IMG/M
3300011271\|Ga0137393_10252314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1498	Open in IMG/M
3300012019\|Ga0120139_1142447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	621	Open in IMG/M
3300012189\|Ga0137388_10131266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2195	Open in IMG/M
3300012189\|Ga0137388_10456264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1186	Open in IMG/M
3300012199\|Ga0137383_10457327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	935	Open in IMG/M
3300012203\|Ga0137399_10652488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	885	Open in IMG/M
3300012203\|Ga0137399_11317810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	607	Open in IMG/M
3300012206\|Ga0137380_10246808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1610	Open in IMG/M
3300012206\|Ga0137380_10515638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1052	Open in IMG/M
3300012209\|Ga0137379_10675553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	939	Open in IMG/M
3300012210\|Ga0137378_10971623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	763	Open in IMG/M
3300012350\|Ga0137372_10413692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1018	Open in IMG/M
3300012355\|Ga0137369_10791554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	647	Open in IMG/M
3300012356\|Ga0137371_10796529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	720	Open in IMG/M
3300012359\|Ga0137385_10599007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	926	Open in IMG/M
3300012363\|Ga0137390_10012321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7649	Open in IMG/M
3300012363\|Ga0137390_10711377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	966	Open in IMG/M
3300012363\|Ga0137390_10956575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	810	Open in IMG/M
3300012925\|Ga0137419_11536333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	565	Open in IMG/M
3300013764\|Ga0120111_1033023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1372	Open in IMG/M
3300018468\|Ga0066662_10588961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1038	Open in IMG/M
3300018482\|Ga0066669_12044669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	538	Open in IMG/M
3300021861\|Ga0213853_11484060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3924	Open in IMG/M
3300021861\|Ga0213853_11534745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	575	Open in IMG/M
3300025910\|Ga0207684_10687843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	870	Open in IMG/M
3300025910\|Ga0207684_10792844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	801	Open in IMG/M
3300025922\|Ga0207646_11829611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	519	Open in IMG/M
3300026035\|Ga0207703_11758911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	596	Open in IMG/M
3300026315\|Ga0209686_1073608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1213	Open in IMG/M
3300026326\|Ga0209801_1033704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2408	Open in IMG/M
3300026548\|Ga0209161_10168284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1251	Open in IMG/M
3300026550\|Ga0209474_10768599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	503	Open in IMG/M
3300026552\|Ga0209577_10783307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	533	Open in IMG/M
3300027857\|Ga0209166_10097613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1643	Open in IMG/M
3300027857\|Ga0209166_10106623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1559	Open in IMG/M
3300027862\|Ga0209701_10250483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1036	Open in IMG/M
3300027875\|Ga0209283_10834584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	563	Open in IMG/M
3300027875\|Ga0209283_10940143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	520	Open in IMG/M
3300027882\|Ga0209590_10219954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1205	Open in IMG/M
3300027882\|Ga0209590_10550387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	744	Open in IMG/M
3300027882\|Ga0209590_10756042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	619	Open in IMG/M
3300028536\|Ga0137415_10447396	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1098	Open in IMG/M
3300031520\|Ga0272428_1007023	All Organisms → cellular organisms → Bacteria	16595	Open in IMG/M
3300034268\|Ga0372943_0770892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	637	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.12%
Host-Associated	Host-Associated	2.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.19%
Plants	Host-Associated → Plants	2.88%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.23%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.04%
Loam	Environmental → Terrestrial → Soil → Loam	19.23%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.38%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.88%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031520	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066672_101087902	3300005167	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAASDVSDAIANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066677_101582902	3300005171	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAPSDVSDALANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066677_103295381	3300005171	Soil	MDEADLVRLVDRLEERAESYVTLDQVQHAARSDVSGAIAEGVLLVDYRTRADGSPVTLCRLNRRHPRVMELTKW*
Ga0066679_101884682	3300005176	Soil	VKPADLVRLVDRLEDEADGYLTLEHVERAAASDASDAIADGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066690_104453881	3300005177	Soil	VTDEELIRIIDGLEEQAESYVSLEDVEHAAGQSVAQSIADGILLVDHRTRLDGSSVTVCRLNRHHPLVMKLTGW*
Ga0066690_105033071	3300005177	Soil	RRRPGRAAHRRAAPPGVNDTDLIRLVDALEDAADSYITLDQVAAAAGGHDLSSAIADHFLLVDYRTRLDGTPVTLCRLNRRHPLVKQLTAW*
Ga0066690_106606542	3300005177	Soil	MDEVDLVRLVDRLEDQAESYVTLEQVERAAGSDVSSAIAQGVLLVDYRTRADGNPVTLCRLNRRHPRVIALTSW*
Ga0066684_108416892	3300005179	Soil	GGVNDSDLVVLVDKLEEKASGYVTLDDVERAAGSPVSAQIASGLLLVDYRTRLDGTAITLCRLNRHHPLVAKLTGW*
Ga0066678_109778851	3300005181	Soil	VRLVDGLEDSADGYLTLEQVESAAREELSGPIARGLLLVDHRTRLDNTKVTLCRLNRHHPKVIELTSW*
Ga0070714_1014355481	3300005435	Agricultural Soil	VTDEDLVRIVDALEDRAESYVTLDDVQAAAQFDVSSAVARHLLLVDYRHRADGTPVTLCRLNRRHPLVQRITSW*
Ga0070708_1000835091	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AQLVRLVDELEEKASGYVTLEEVERAVGAAVSAQIERGLLLVDYRTRLDGTNVTLCRLNRHHPLVVELTGW*
Ga0070708_1019444941	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VNDAELVRLVDELEAKAESYVTLEDVERAAGAVVSAQIAAGLLLVDYRQRLDGTPVTLCRLNRHHALVVELTGW*
Ga0066686_108885852	3300005446	Soil	TLDRVQSACGDVSRAIEEGLLLVDYRTRADGTPVTLCRLNRHHPLVKDLTSW*
Ga0066689_101196133	3300005447	Soil	VNPADLVRLVDRLEDEADGYITLEDVDRVAGADVASAIQEGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066689_103414011	3300005447	Soil	LEDEADGYITLEDVERAAASDVSDAIANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066689_104093541	3300005447	Soil	YLTLEQVESAAREELSGPIARGLLLVDHRTRLDNTKVTLCRLNRHHPKVIELTSW*
Ga0070706_1000171696	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTDAQLVRLVDELEEKASGYVTLEEVERAVRAAVSAQIERGLLLVDYRTRLDGTNVTLCRLNRHHPLVVELTGW*
Ga0070706_1012119722	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	CACCDVNDADLVRLVDSLEDAAEGYVTLDEVQSTAGDVTQAIADGLLLVDYRTRADGSAVTLCRLNRHHPLVKDLTSW*
Ga0070707_1006401701	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VSGSPSSAESLVRLVDALEDSAEGYVTLPDIEAAFGAPVSQFIDDALLLVDYRTRLDGTSVTLCRLNRRHPLVAELTSW*
Ga0070707_1023265582	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VNDADLVRLVDELEDKAAIYLTLEQVETAAGSDVSAAITEGLLLVDYRTRVDGARVTLCRLNRRHPLVVELTRW*
Ga0070698_1002475012	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VTDAQLVRLVDELEEKASGYVTLEEVERAVGSAVSAQIERGLLLVDYRTRLDGTNVTLCRLNRHHPLVAELTGW*
Ga0070698_1016401091	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	AARDVNDADLVRLVDELEDKAAIYLTLEQVETAAGSDVSAAITEGLLLVDYRTRVDGARVTLCRLNRRHPLVVELTRW*
Ga0070698_1019384491	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VNDADLVRLVDGLEDSADGYLTLEQVESAARDELSGPIARGLLLVDHRTRLDNTKVTLCRLNRHHPKVIELTSW*
Ga0070698_1021062482	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VNDSELVRLVDDLEEKAEGYVTLEDIERAAGQRVADAVAAALLLVDHRTRLDGTPVTLCRLN
Ga0070699_1001366583	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VTDAQLVRLVDELEVKASGYVTLEEVERAVGAAVSAQIERGLLLVDYRTRLDGTNVTLCRLNRHHPLVIELTGW*
Ga0070730_101554052	3300005537	Surface Soil	MTEADLVRLVDQLEDAAEGYVTLEQVEKAVGANVSAAIASGLLLVDHRTRLDGTEATLCRLNRRHALVTRLTSW*
Ga0066701_101888471	3300005552	Soil	VNPADLVRLVDRLEDEADGYITLEEVDRLAGADVASAIQEGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066661_101477013	3300005554	Soil	MDEADLVRLVDRLEERAESYVTLEEVERATLGRDVSQAIADGLLLVDYRTRADGSPVTLCRLNRRHPHVMELTKW*
Ga0066692_100813442	3300005555	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAPSDVSDAIANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066670_104842131	3300005560	Soil	MDEADLVRLVDRLEEQAESYVTLDEVQRATSGSDVSQAIADGVLLVDYRTRADGSPITLCRLNRRHPRVMELT
Ga0066699_110715002	3300005561	Soil	VNSDAEAALVRLVDGLEDTSDGPLMLEAVTAAAGYDVSSAVANGLLLVDYRTRVDGSQVTLCRLNRHHPLVVELTRW*
Ga0066702_101594173	3300005575	Soil	MDEADLVRLVDRLEERAESYVTLDQVQHAARSDVSGAIAEGVLLVDYRTRADGSPVTLCRLNRRRPRVMELTKW*
Ga0066708_100537483	3300005576	Soil	MDEADLVRLVDRLEEQAESYVTLDEVQRATLGSDVSQAIADGVLLVDYRTRADGSPITLCRLNRRHPRVMELTRW*
Ga0066691_103365262	3300005586	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAASDVSDAIANGLLLVDYRTRLDGTPVTLCRLNRRHPLVEELTSW*
Ga0066903_1001529443	3300005764	Tropical Forest Soil	MDEVDPLGGVMDEADLIRLVDRLEDQAASYVTLEQVERAAGADVSSAIAEGLLLVDYRTRADGSPVTLCRLNRRHPRVIALTSW*
Ga0068858_1021024161	3300005842	Switchgrass Rhizosphere	VNDADLVRLVDRLEDEAESYLSLEHVQAAAGHELSASIASGLLLVDHRTRLDGTAVTLCRLNRHHPLVAQLTGW*
Ga0066789_102808931	3300005994	Soil	VNDTDLVRLVDALEDAAAGYLTLDQVETAVGEELSGSIASGLVLVDYRTRLDGSQVTLCRLNRHHPLVAQLTGW*
Ga0070717_117853442	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	APRGVSDDALIRLVDALEDKADNYVTLDEVEHAVGSSVAQPIADGILLVDHRTRLDGSAVTLCRLNRHHPLVAQLTGW*
Ga0066696_100429224	3300006032	Soil	MDEADLVRLVDRLEEQAESYVTLDEVQRATLGSDVSQAIADGVLLVDYRTRADGSPITL
Ga0066665_116573282	3300006796	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAASDVSDALANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW*
Ga0066660_101356972	3300006800	Soil	MDEADLVRLVDRLEERAESYVTLEEVERATLGRDVSQAIAEGVLLVDYRTRADGSPVTLCRLNRRHPRVMELTKW*
Ga0066660_109997781	3300006800	Soil	VRLIDELEDSAAGYLTLEEVERAVGSEVTAQIKSGLLLIDHRMRLDGTQVTLCRLNRHHPLVAELTGW*
Ga0066710_1021848192	3300009012	Grasslands Soil	MVDELEDKAESYVTLEDVGRAVGADVSAQIASGLLLVDYRTHLDGTQVTLCRLNRHHPLVAKLTGW
Ga0066710_1037682531	3300009012	Grasslands Soil	VTDEELIRTIDRLEEQAESYVTIEDVEHAAGQSVAQSIADGILLVDHRTRLDGTRVTVCRLNRHHPLVTKLTGW
Ga0099830_111179192	3300009088	Vadose Zone Soil	VNASELVRLVDDLEEKAENYVTLDDVESAVGHSVANAVVAGLLLVDHRTRLDGTPVTLCRLNRHHPLVAKLTGW*
Ga0099830_114003961	3300009088	Vadose Zone Soil	VNDTELVRLVDELEEKASGYITLEDVERAAGFTVSAEIESGLLLVDYRTRLDGTAVTLCRLNRHHPLVVE
Ga0099828_103972122	3300009089	Vadose Zone Soil	VNDSELVRLVDDLEEKAESYVTLEDIERAAGQSVADAVAAALLLVDHRTRLDGTPVTLCRLNRHHPLVAELTGW*
Ga0099828_115395582	3300009089	Vadose Zone Soil	VTDNELVLLVDELEEKASGYVTLEDVERAVGCAVSAQIAGGLLLVDYRKRLDGTAVTVCRLNRHHPLVAK
Ga0099828_117912231	3300009089	Vadose Zone Soil	VNDADLVRLVDGLEDSADGYLTLEQIESAAGQELSGPIARGLLLVDHRTRLDNTEVTLCRLNRHHPQVIELTSW*
Ga0099827_102125692	3300009090	Vadose Zone Soil	VTSDADLIRLVDSLEDSADGYLTLDKVQSAFGDVSRAIEEALLLVDYRTRADGSPVTLCRLNRHHPLVKELTAW*
Ga0099827_102353762	3300009090	Vadose Zone Soil	MDEVDLVHLVDRLEDQAESYVTLEQVERAAGSDVSSAIAEGVLLVDYRTRADGNPATLCRLNRRHPRVIALTSW*
Ga0099827_103544822	3300009090	Vadose Zone Soil	VNDAELIRLIDELEEKAAGYVTLEDVERAVGAAVSAQIASGLLLVDYRTRLDGTAVTLCRLNRHHPLVAELTGW*
Ga0099827_111902082	3300009090	Vadose Zone Soil	VTDAELVRLIDELEESAAGYVTLEEVERAVGSEVTAQIASGVLLVDYRTRLDGTAVTLCRLNRHHPLVAELTGW*
Ga0114129_106622952	3300009147	Populus Rhizosphere	VNDADLVRLVDGLEDAADGYLTLAEIEAAAGEDLTPAVAAELLLVDHRTRLDGSAVTLCRLNRHHPLVMELTGW*
Ga0116854_10160221	3300009400	Soil	LEDSADGYVTLAQVEAAAGHQVSDPIARGLLLVDYRTRLDGTPVTLCRLNRHHPLVAQLTGW*
Ga0137392_110509602	3300011269	Vadose Zone Soil	VNDSELVRLVDDLEEKAEGYVTLEDIERAAGQSVADAVTAALLLVDHRTRLDGTPVTLCRLNRHHPLVAELTGW*
Ga0137391_100243804	3300011270	Vadose Zone Soil	VNDTELVRLVDELEEKASGYITLEDVERAAGFTVSAEIESGLLLVDYRTRLDGTAVMLCRLNRHHPLVVELTGW*
Ga0137391_108339512	3300011270	Vadose Zone Soil	VNAADLVRLVDALEDSASSYVTLDAVQNAAGEDVSWAIEAQLLLVDYRTRLDGSAVTLCRLNRRHPLIARLTSW*
Ga0137391_114078702	3300011270	Vadose Zone Soil	VNDADLVRLVDALEEKAATYVTLEEVQAAAGGDVSAAIAEDLLLVDYRMRVDGASMTLCRLNRRHPLVVELTRW*
Ga0137393_102523141	3300011271	Vadose Zone Soil	KASGYITLEDVERAAGFTVSAEIESGLLLVDYRTRLDGTAVTLCRLNRHHPLVVELTGW*
Ga0120139_11424472	3300012019	Permafrost	VNDADLVRLVDKLEDAGYLTLEQIEAAAGEALSERVASGLLLVDYRTRLDGTTVTLCRLNRHHPLVAQLTAW*
Ga0137388_101312662	3300012189	Vadose Zone Soil	VNDSELVRLVDDLEEKAEGYVTLEDIERAAGQSVADAVAAALLLVDHRTRLDGTPVTLCRLNRHHPLVAELTGW*
Ga0137388_104562642	3300012189	Vadose Zone Soil	VTSDADLIRLVDSLEDSADGYLTLDKVQSAFGDVSRAIEEALLLVDYRTRADGTPVTLCRLNRHHPLVKQLTSW*
Ga0137383_104573272	3300012199	Vadose Zone Soil	VNDADLVCLVDGLEDSADGYLTLEQVESAAREELSGPIARGLLLVDHRTRLDNTKVTLCRLNRHHPKVIELTSW*
Ga0137399_106524882	3300012203	Vadose Zone Soil	VNDTELVRLVDELEEKASGYITLEDVERAAGFAVSAEIESGLLLVDYRTRLDGTAVTLCRLNRHHPLVVELTGW*
Ga0137399_113178101	3300012203	Vadose Zone Soil	VTDAELVVLVDELEEKASGYVTLEDVERAVGFAVSAQIAGGLLVVDYRTRLDGTRVTLCRLNRHHPLVAELTGW*
Ga0137380_102468083	3300012206	Vadose Zone Soil	VTDAELVRLIDELEESAAGYVTLEEVERAVGSEVTAQIASGVLLVDHRTRLDGTAVTLCRLNRQHPLVAELTGW*
Ga0137380_105156381	3300012206	Vadose Zone Soil	APRGVNDADLVCLVDGLEDSADGYLTLEQVESAAREELSGPIARGLLLVDHRTRLDNTKVTLCRLNRHHPKVIELTSW*
Ga0137379_106755532	3300012209	Vadose Zone Soil	VTSDADLIRLVDSLEDSVDGYLTLDKVQSALGDVSRAIEEALLLVDYRTRADGTPVTLCRLNRHHPLVKELTAW*
Ga0137378_109716231	3300012210	Vadose Zone Soil	VTDAELVRLIDELEESAAGYITLEEVERAVGSEVTSQIASGVLLVDHRTRLDGTGVTLCRLNRHHPLVAELTGW*
Ga0137372_104136922	3300012350	Vadose Zone Soil	VTDAQLVRLVDELEAKASGYVTLEEVEHAVGAAVSAQIESGLLLVDYRTRLDGTNVTLCRLNRHHPLVAELTGW*
Ga0137369_107915542	3300012355	Vadose Zone Soil	DLVRLVDGLEDAADSYVTLDDVARAFGAPVQPFVDEAVLLVDFRTRADGSPVTLCRLNRRHPLVARLTSW*
Ga0137371_107965292	3300012356	Vadose Zone Soil	MDEVDLVRLVDRLEDQAESYVTLEQVERAAGSDVSSAIAEGVLLVDYRTRADGNPVTLCRLNRRHPRVIALTSW*
Ga0137385_105990072	3300012359	Vadose Zone Soil	VTDAELVRLIDELEESAAGYVTLEEVERAVGSEVTAQIASGVLLVDHRTRLDGTAVTLCRLNRHHPLVAELTGW*
Ga0137390_100123214	3300012363	Vadose Zone Soil	VNDTELVRLVDELEEKASGYITLEDVERAAGFTVSAEIESGLLLVDYRTRLDGTAVTLCRLNRHHPLVVELTGW*
Ga0137390_107113772	3300012363	Vadose Zone Soil	VSSDADLIRLVDSLEDSADGYLTLDKVQSAFGDVSRAIEEALLLVDYRTRADGTPVTLCRLNRHHPLVKQLTSW*
Ga0137390_109565751	3300012363	Vadose Zone Soil	VDDLVRQVDALEDAADSYLTLEDVQAAAGGDVGWAVEQNLLLVDFRTRLDGSQVILCRLNRRHPRVVELTSW
Ga0137419_115363331	3300012925	Vadose Zone Soil	PGGVTDAELVVLVDELEEKASGYVTLEDVERAVGFAVSAQIAGGLLVVDYRTRLDGTRVTLCRLNRHHPLVAELTGW*
Ga0120111_10330232	3300013764	Permafrost	VNDADLVRLVDSLEDSAASYLTLEQIEAAAGEAVSERVASGLLLVDYRTRLDGSAVTLCRLNRHHPLVAQLTGW*
Ga0066662_105889612	3300018468	Grasslands Soil	MDEADLVRLVDRLEERAESYVTLDQVQHAAGSDVSGAIAEGVLLVDYRTRADGSPVTLCRLNRRHPRVMELTKW
Ga0066669_120446691	3300018482	Grasslands Soil	TVDGYLTLDRVQSACGDVSHVIEEGLLLVDYRTRADGTPVTLCRLNRHHPLVKDLTSW
Ga0213853_114840602	3300021861	Watersheds	VNDDDADLVRLVDKLEDTSEGYLTLEEIEAAAGRPLAASVANGLLLVDYRTRLDGTPVTLCRLNRHHPLVTQLTSW
Ga0213853_115347452	3300021861	Watersheds	VNDADLVRLVDALEDNAEHYLTLEDVEGATGGDVASAVADGLLLVDYRVRLDGAPVTVCRLNRHHPLVVRLTSW
Ga0207684_106878431	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	CACCDVNDADLVRLVDSLEDAAEGYVTLDEVQSTAGDVTQAIADGLLLVDYRTRADGSAVTLCRLNRHHPLVKDLTSW
Ga0207684_107928442	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VTDAQLVRLVDELEEKASGYVTLEEVERAVRAAVSAQIERGLLLVDYRTRLDGTNVTLCRLNRHHPLVVELTGW
Ga0207646_118296112	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VNDADLVRLVDELEDKAAIYLTLEQVETAAGSDVSAAITEGLLLVDYRTRVDGARVTLCRLNRRHPLVVELTRW
Ga0207703_117589112	3300026035	Switchgrass Rhizosphere	VNDADLVRLVDRLEDEAESYLSLEHVQAAAGHELSASIASGLLLVDHRTRLDGTAVTLCRLNRHHPLVAQLTGW
Ga0209686_10736082	3300026315	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAASDVSDALANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW
Ga0209801_10337042	3300026326	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAASDVSDAIANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW
Ga0209161_101682842	3300026548	Soil	VNRADLVRLVDRLEDEADGYITLEDVERAAPSDVSDALANGLLLVDYRTRLDGTPVTLCRLNRRHPLVAELTKW
Ga0209474_107685992	3300026550	Soil	MDEADLVRLVDRLEEQAESYVTLDEVQRATLGSDVSQAIADGVLLVDYRTRADGSPITLCRLNRRHPRVMELTRW
Ga0209577_107833072	3300026552	Soil	MDEADLVRLVDRLEEQAESYVTLDEVQRATLGSDVSQAIADGVLLVDYRARADGSPITLCRLNRRHPRVMELTRW
Ga0209166_100976132	3300027857	Surface Soil	VNDADLVRLVDQLEDTAVGYLTLEQIEAAAGARLDAQIAQGLLLVDHRTRADGTPVTLCRLNRHHPLVAELTSW
Ga0209166_101066232	3300027857	Surface Soil	MTEADLVRLVDQLEDAAEGYVTLEQVEKAVGANVSAAIASGLLLVDHRTRLDGTEATLCRLNRRHALVTRLTSW
Ga0209701_102504832	3300027862	Vadose Zone Soil	VNASELVRLVDDLEEKAENYVTLDDVESAVGHSVANAVVAGLLLVDHRTRLDGTPVTLCRLNRHHPLVAKLTGW
Ga0209283_108345842	3300027875	Vadose Zone Soil	VTDNELVLLVDELEEKASGYVTLEDVERAVGCAVSAQIAGGLLLVDYRKRLDGTAVTVCRLNRHHPL
Ga0209283_109401432	3300027875	Vadose Zone Soil	GWRRGGSGGPARRRATPGSVNDSELVRLVDDLEEKAEGYVTLEDIERAAGQSVADAVTAALLLVDHRTRLDGTPVTLCRLNRHHPLVAELTGW
Ga0209590_102199542	3300027882	Vadose Zone Soil	MDEVDLVRLVDRLEDQAESYVTLEQVERAAGSDVSSAIAEGVLLVDYRTRADGNPATLCRLNRRHPRVIALTSW
Ga0209590_105503872	3300027882	Vadose Zone Soil	VTSDADLIRLVDSLEDSADGYLTLDKVQSAFGDVSRAIEEALLLVDYRTRADGSPVTLCRLNRHHPLVKELTAW
Ga0209590_107560422	3300027882	Vadose Zone Soil	VNDAELIRLIDELEEKAAGYVTLEDVERAVGAAVSAQIASGLLLVDYRTRLDGTAVTLCRLNRHHPLVAELTGW
Ga0137415_104473962	3300028536	Vadose Zone Soil	VNPADLVRLVDRLEDEADGYITLEEVERVAGADVACAIQEGLLLVDYRTRLNGTPVTLCRLNRRHPLVAELTKW
Ga0272428_100702313	3300031520	Rock	VSDDADLVRLVDGVEDSADGYVTLEQLEAAAGQELSDPIARGLLLVDHRTRLDGTLVTLCRLNRHHPLVAQLTSW
Ga0372943_0770892_234_458	3300034268	Soil	VNDADLIRLVDALEEQADHSLTLEDVQRAAGRELASAVADGVLLVDYRTRLDGTSVTQCRLNRHHPLVVQLTSW
Ga0372946_0061703_238_462	3300034384	Soil	VSHAALIRLVDGLEDRAAGYVTLDQVEAGGAQNVAEAIADGVLLVDHRTRADGTAVILCRLNRHHPAVIELTSW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096970

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences