Metagenome / Metatranscriptome Family F096700

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096700
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	109 residues
Representative Sequence	QNEIVAHNPLPGLISDGSISPETVETIRQDTIYALESVTQPVVEKAADIPAKIAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Number of Associated Samples	67
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.96 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.423 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.692 % of family members)
Environment Ontology (ENVO)	Unclassified (53.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.692 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.77% β-sheet: 0.00% Coil/Unstructured: 49.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00133	tRNA-synt_1	7.69
PF02954	HTH_8	3.85
PF13180	PDZ_2	1.92
PF03729	DUF308	1.92
PF00072	Response_reg	0.96
PF00196	GerE	0.96
PF13561	adh_short_C2	0.96
PF00561	Abhydrolase_1	0.96
PF01145	Band_7	0.96
PF00158	Sigma54_activat	0.96
PF13518	HTH_28	0.96
PF01180	DHO_dh	0.96
PF12686	DUF3800	0.96
PF08264	Anticodon_1	0.96
PF00069	Pkinase	0.96
PF02518	HATPase_c	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	7.69
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	7.69
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	7.69
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	7.69
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.85
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.92
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.96
COG0167	Dihydroorotate dehydrogenase	Nucleotide transport and metabolism [F]	0.96
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.96
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	78.85 %
Unclassified	root	N/A	10.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.54 %
Unclassified	root	N/A	10.58 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.54 %
Unclassified	root	N/A	10.58 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.54 %
Unclassified	root	N/A	10.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10049000	All Organisms → cellular organisms → Bacteria → Acidobacteria	846	Open in IMG/M
3300002245\|JGIcombinedJ26739_100187782	All Organisms → cellular organisms → Bacteria → Acidobacteria	1955	Open in IMG/M
3300002245\|JGIcombinedJ26739_101705325	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300002907\|JGI25613J43889_10069106	All Organisms → cellular organisms → Bacteria → Acidobacteria	960	Open in IMG/M
3300002910\|JGI25615J43890_1021548	All Organisms → cellular organisms → Bacteria → Acidobacteria	1064	Open in IMG/M
3300002914\|JGI25617J43924_10152034	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300005557\|Ga0066704_10372852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300006057\|Ga0075026_101013686	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300007258\|Ga0099793_10038955	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300007788\|Ga0099795_10628641	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300007788\|Ga0099795_10656767	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300009038\|Ga0099829_11603709	Not Available	537	Open in IMG/M
3300009088\|Ga0099830_10258906	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300009089\|Ga0099828_11726842	Not Available	550	Open in IMG/M
3300009143\|Ga0099792_10155277	All Organisms → cellular organisms → Bacteria → Acidobacteria	1265	Open in IMG/M
3300010359\|Ga0126376_11447657	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300010360\|Ga0126372_12134845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300011270\|Ga0137391_11157306	Not Available	621	Open in IMG/M
3300011271\|Ga0137393_10232944	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300012096\|Ga0137389_10198735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1668	Open in IMG/M
3300012096\|Ga0137389_10523219	All Organisms → cellular organisms → Bacteria → Acidobacteria	1018	Open in IMG/M
3300012189\|Ga0137388_10388075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1292	Open in IMG/M
3300012202\|Ga0137363_10491977	All Organisms → cellular organisms → Bacteria → Acidobacteria	1029	Open in IMG/M
3300012202\|Ga0137363_11196423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300012202\|Ga0137363_11500059	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300012203\|Ga0137399_10291954	All Organisms → cellular organisms → Bacteria → Acidobacteria	1345	Open in IMG/M
3300012203\|Ga0137399_11167955	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300012203\|Ga0137399_11645127	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300012205\|Ga0137362_10242386	Not Available	1556	Open in IMG/M
3300012205\|Ga0137362_10755320	All Organisms → cellular organisms → Bacteria → Acidobacteria	834	Open in IMG/M
3300012205\|Ga0137362_10830935	All Organisms → cellular organisms → Bacteria → Acidobacteria	791	Open in IMG/M
3300012361\|Ga0137360_10042747	All Organisms → cellular organisms → Bacteria → Acidobacteria	3222	Open in IMG/M
3300012361\|Ga0137360_10058068	All Organisms → cellular organisms → Bacteria → Acidobacteria	2817	Open in IMG/M
3300012361\|Ga0137360_10407803	All Organisms → cellular organisms → Bacteria → Acidobacteria	1146	Open in IMG/M
3300012361\|Ga0137360_10462226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300012361\|Ga0137360_10495852	All Organisms → cellular organisms → Bacteria → Acidobacteria	1039	Open in IMG/M
3300012361\|Ga0137360_10745087	Not Available	842	Open in IMG/M
3300012362\|Ga0137361_10310993	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300012362\|Ga0137361_10488184	All Organisms → cellular organisms → Bacteria → Acidobacteria	1131	Open in IMG/M
3300012362\|Ga0137361_10649747	All Organisms → cellular organisms → Bacteria → Acidobacteria	965	Open in IMG/M
3300012582\|Ga0137358_10310098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1071	Open in IMG/M
3300012683\|Ga0137398_11037595	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300012917\|Ga0137395_10093944	All Organisms → cellular organisms → Bacteria	1980	Open in IMG/M
3300012917\|Ga0137395_10650428	All Organisms → cellular organisms → Bacteria → Acidobacteria	762	Open in IMG/M
3300012917\|Ga0137395_11042286	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300012918\|Ga0137396_10109361	All Organisms → cellular organisms → Bacteria → Acidobacteria	1982	Open in IMG/M
3300012918\|Ga0137396_10212866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1422	Open in IMG/M
3300012923\|Ga0137359_10111527	All Organisms → cellular organisms → Bacteria → Acidobacteria	2420	Open in IMG/M
3300012924\|Ga0137413_10016846	All Organisms → cellular organisms → Bacteria → Proteobacteria	3749	Open in IMG/M
3300012925\|Ga0137419_10214762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1432	Open in IMG/M
3300012925\|Ga0137419_10546357	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300012925\|Ga0137419_11695588	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300012927\|Ga0137416_10100649	All Organisms → cellular organisms → Bacteria → Acidobacteria	2172	Open in IMG/M
3300012927\|Ga0137416_10551792	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300012927\|Ga0137416_10991386	Not Available	750	Open in IMG/M
3300015054\|Ga0137420_1136078	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300015241\|Ga0137418_10285195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1386	Open in IMG/M
3300015242\|Ga0137412_10030078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4433	Open in IMG/M
3300015242\|Ga0137412_10204805	Not Available	1574	Open in IMG/M
3300020140\|Ga0179590_1194831	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300020170\|Ga0179594_10114327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	979	Open in IMG/M
3300020199\|Ga0179592_10176630	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300020199\|Ga0179592_10409967	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300020579\|Ga0210407_10696186	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300020579\|Ga0210407_10992097	All Organisms → cellular organisms → Bacteria → Acidobacteria	641	Open in IMG/M
3300020579\|Ga0210407_11106908	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300020580\|Ga0210403_10305573	All Organisms → cellular organisms → Bacteria → Acidobacteria	1303	Open in IMG/M
3300020580\|Ga0210403_10466039	All Organisms → cellular organisms → Bacteria → Acidobacteria	1028	Open in IMG/M
3300020580\|Ga0210403_11329955	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300021168\|Ga0210406_11017030	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300021168\|Ga0210406_11216130	Not Available	547	Open in IMG/M
3300021170\|Ga0210400_10152121	All Organisms → cellular organisms → Bacteria → Acidobacteria	1864	Open in IMG/M
3300021171\|Ga0210405_10378073	All Organisms → cellular organisms → Bacteria → Acidobacteria	1116	Open in IMG/M
3300021171\|Ga0210405_10424154	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300021180\|Ga0210396_10382819	All Organisms → cellular organisms → Bacteria → Acidobacteria	1238	Open in IMG/M
3300021420\|Ga0210394_10844182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300024330\|Ga0137417_1164395	Not Available	750	Open in IMG/M
3300024330\|Ga0137417_1380097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3327	Open in IMG/M
3300026285\|Ga0209438_1207447	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300026514\|Ga0257168_1096311	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300026532\|Ga0209160_1336428	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300026557\|Ga0179587_10338462	All Organisms → cellular organisms → Bacteria → Acidobacteria	974	Open in IMG/M
3300026557\|Ga0179587_10416074	All Organisms → cellular organisms → Bacteria → Acidobacteria	877	Open in IMG/M
3300027381\|Ga0208983_1084434	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300027512\|Ga0209179_1001482	All Organisms → cellular organisms → Bacteria → Proteobacteria	2888	Open in IMG/M
3300027548\|Ga0209523_1075108	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300027565\|Ga0209219_1174214	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300027591\|Ga0209733_1098518	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300027610\|Ga0209528_1011491	All Organisms → cellular organisms → Bacteria → Acidobacteria	1916	Open in IMG/M
3300027629\|Ga0209422_1145235	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300027633\|Ga0208988_1053973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1022	Open in IMG/M
3300027635\|Ga0209625_1003796	All Organisms → cellular organisms → Bacteria → Acidobacteria	3282	Open in IMG/M
3300028536\|Ga0137415_10124311	All Organisms → cellular organisms → Bacteria → Acidobacteria	2425	Open in IMG/M
3300028536\|Ga0137415_10230470	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300029636\|Ga0222749_10226636	All Organisms → cellular organisms → Bacteria → Acidobacteria	943	Open in IMG/M
3300029636\|Ga0222749_10458983	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300031753\|Ga0307477_10087784	All Organisms → cellular organisms → Bacteria → Acidobacteria	2159	Open in IMG/M
3300031962\|Ga0307479_10128903	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300032174\|Ga0307470_11953722	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300032180\|Ga0307471_100200903	All Organisms → cellular organisms → Bacteria → Acidobacteria	1994	Open in IMG/M
3300032180\|Ga0307471_102705506	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300032180\|Ga0307471_103976226	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.04%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.04%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.50%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	59.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100490001	3300001545	Forest Soil	GNEVVAHNPLPELISDGSISPETVESIRQETTYALESVTQPAVAKPVEASVKISETSQQDMDSLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEIKAKKS*
JGIcombinedJ26739_1001877822	3300002245	Forest Soil	GLVGNEVVAHNPLPELISDGSISPETVESIRQETTYALESVTQPAVAKPVEASVKISETSQQDMDSLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEIKAKKS*
JGIcombinedJ26739_1017053251	3300002245	Forest Soil	AANGASEPHVEKPEPEPEPEPAVTYDFISEAPSDEPVDYTPDPGLVGNEIVDHNPLPGLISDGSISPETVETIRQDTIYALESVTAEVPERPAEIPTTKIADTSQHDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
JGI25613J43889_100691061	3300002907	Grasslands Soil	QNEIVAHNPLPGLISDGSISPETVETIRQDTIYALESVTQPVVEKAADIPAKIAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
JGI25615J43890_10215481	3300002910	Grasslands Soil	VPXASGVSETSVEPAPTEPPLTYDFVSEAPSDEPVHYVPDPRLVQNEIVAHNPLPGLISDGSISPETVETIRQDTIYALESVTQPVVEKAADIPLKIAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
JGI25617J43924_101520341	3300002914	Grasslands Soil	AHNPLPGLISDGSISPETVETIRQDTIYALESVTQPVVEKAADIPLKIAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0066704_103728522	3300005557	Soil	LVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVTENVREKPAETSAKISETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0075026_1010136861	3300006057	Watersheds	HNPLPDLISDGSISPETVENIRQETSYALESVTQTVAKKPAESAVKIAEASQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0099793_100389553	3300007258	Vadose Zone Soil	LLRNGVGVSKTLPDRIADGALSAETVESIRQETTYALESVAPPVLKKSKVNSATAPEQAQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIREEINAKKS*
Ga0099795_106286412	3300007788	Vadose Zone Soil	DLISDGSISPETVETIRQETSYALEGVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0099795_106567671	3300007788	Vadose Zone Soil	EAALTYDFVSEAPSEEPVSYVPDPGLVGNEIVDHTPLPELISDGSISLETVESIRQETTYALESVTESAATKPANNATAKIVETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0099829_116037091	3300009038	Vadose Zone Soil	VGNEIVDHNPLPELISEGSISPETVETIRQDTIYALESVTEPVVTKPANAAAKIAESSQQDMDALVANVLAKMSPAMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0099830_102589061	3300009088	Vadose Zone Soil	STTYALESVTKSAVKKPESAVKIAEASQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0099828_117268421	3300009089	Vadose Zone Soil	PAQPEAAQLEAAPTYDFISEAPSEEPVHYVPEPELVQNEVVAHNPLPDLISDGSISPETVENIRQSTTYALESVTKSAVEKPAEASTKTAEAPQQDMDALVANVLAKMSPEMLRAVTREILKPVVAAMIRDEINAKKS*
Ga0099792_101552771	3300009143	Vadose Zone Soil	HNPLPELISDGSISPETVETIRQDTIYALESVTEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0126376_114476571	3300010359	Tropical Forest Soil	FPEDFISEEANNEPVSYVSDPNLVRNEVVSPNPLPDLISDGSISPETVENIREQTTYALESVPDPVIETARESAEKAPAQGASEMDALVAKVLAKMSPEMLQAVTREILKPVVEAMIRDEISAKKP*
Ga0126372_121348451	3300010360	Tropical Forest Soil	NIREQTTSALETVPEPVIETAKESSQKAPEQTAPEMDALVAKVLAKMSPEMLQAVTREILKPVVEAMIRDEIGAKKS*
Ga0137391_111573061	3300011270	Vadose Zone Soil	VENIRQSTTYALESVTKSAVEKPAEASTKTAEAPQQDMDALVANVLAKMSPEMLRAVTREILKPVVAAMIRDEINAKKS*
Ga0137393_102329441	3300011271	Vadose Zone Soil	PSEEPVHYVPEPELVQNEVVAHNPLPDLISDGSISPETVENIRQSTTYALESVTKSAVEKPAEASTKTAEAPQQDMDALVANVLAKMSPEMLRAVTREILKPVVAAMIRDEINAKKS*
Ga0137389_101987351	3300012096	Vadose Zone Soil	LTYDFVSEAPSEEPVHYVSEPELVQNEVVAHNPLPDLISDGSISPETVESIRQETSYALGSVAQAVVEKSEKSAVKIAEASQPDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137389_105232191	3300012096	Vadose Zone Soil	NRLPDLISDGALSAETVESIRQETTYALGSVAPPVRKESKVNSATAPEQAQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIREEINAKKS*
Ga0137388_103880752	3300012189	Vadose Zone Soil	SYEPGPGLLRNEVVVSSPLPDLISDGALSAETVESIRQETTYALESVAPPVLKKSKVNSATAPERAQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIREEINAKKS*
Ga0137363_104919772	3300012202	Vadose Zone Soil	VSEEPGVASVSYEPEPGLLRNEVVVSSPLPDLISDGAISPETVESIRQETTYALGSVAPPVRKESKVNSATAPEQAQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIREEINAKKS*
Ga0137363_111964231	3300012202	Vadose Zone Soil	NEIVDHTPLPELISDGSISVETVESIRQETSYALESVTESAATKPANNATAKFVETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137363_115000591	3300012202	Vadose Zone Soil	PEAVSYDFVSEAPSEEPVFYTPDPGLVQNEVVAHNPLPELISDGSISPETVETIRQDTIYALESVTQPVLEKAADTPAKIAETPQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137399_102919543	3300012203	Vadose Zone Soil	PSEEPVTYVPDPALVSNEVVAHNPLPELISDGSISPETVESIRQDTIYAMESVTEPIVAKPADTTPKIGESSQHDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137399_111679551	3300012203	Vadose Zone Soil	PSEEPVTYVPDPALVSNEVVAHNPLPELISDGSISPETVETIRQDTIYAMESVTEPVATKPANATAKITETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137399_116451272	3300012203	Vadose Zone Soil	DHTPLPELISDGSISVETVESIRQETSYALESVTESAATKPANNATAKFVETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137362_102423861	3300012205	Vadose Zone Soil	VETIRQDTIYALESVIEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137362_107553202	3300012205	Vadose Zone Soil	PDLISDGSISPETVETIRQETSYALESVTENVREKPAETSAKISETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137362_108309352	3300012205	Vadose Zone Soil	ASGVSETSVEPAPTEPPLTYDFVSEAPSEEPVHYVPDPGLVQNEIVAHNPLPGLISDGSISPETVETIRQDTIYALESVTQPVVEKAADIPAKIAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137360_100427474	3300012361	Vadose Zone Soil	VPEPELVQNEVVAHNPLPELISEGSISPETVENIRQETSYALESVAQTVAKKPAESAVKIAEAPQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137360_100580683	3300012361	Vadose Zone Soil	PQPEAVSYDFVSEAPSEEPVFYTPDPGLVQNEVVAHNPLPELISDGSISPETVETIRQDTIYALESVTQPVLEKAADTPAKIAETPQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137360_104078032	3300012361	Vadose Zone Soil	GLLRNEVVVSSPLPDLISDGAISPETVESIRQETTYALGSVAPPVRKESKVNSATAPEQAQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIREEINAKKS*
Ga0137360_104622261	3300012361	Vadose Zone Soil	YDFVSEAPSEEPVTYVPDPALVGNEIVEHNPLPELISDGSISPETVETIRQDTIYALESVIEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137360_104958521	3300012361	Vadose Zone Soil	ISDGSISRETVENIRQSTTYALESVTKSAVEKPAEASTKTAEAPQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137360_107450871	3300012361	Vadose Zone Soil	VENIRQTTTYALGSVTKPVVEKPAESAVKIAEASQQDMDALVANVLAKMSPEMLKAVTREILKPVVAAMIRDEINAKKS*
Ga0137361_103109931	3300012362	Vadose Zone Soil	EAPSEEPVHYVPEPELVQNEVVAHNPLPDLISDGSISPETVENIRQSTTYALESVTKSAVEKPAEASTKTAEAPQQDMDALVANVLAKMSPEMLRAVTREILKPVVAAMIRDEINAKKS*
Ga0137361_104881841	3300012362	Vadose Zone Soil	RNEVVVSSPLPDLISDGAISPETVESIRQETTYALGSVAPPVRKESKVNSATAPEQAQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIREEINAKKS*
Ga0137361_106497471	3300012362	Vadose Zone Soil	SEEPVFYTPDPGLVQNEVVAHNPLPELISDGSISPETVETIRQDTIYALESVTQPVLEKAADTPAKIAETPQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137358_103100981	3300012582	Vadose Zone Soil	EQPPVVDEVQPEPALTYDFVSEAPSEEPVTYVPDPALVGNEIVEHNPLPELISDGSISPETVETIRQDTIYALESVTEPVVAKPAHAAAKIAESSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137398_110375951	3300012683	Vadose Zone Soil	EEPVSYVPDPGLVGNEIVDHTPLPELISDGSISVETVESIRQETSYALESVTESAATKPANNATAKFVETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137395_100939443	3300012917	Vadose Zone Soil	AALTYDFVSEAPSEEPVSYVPDPGLVGNEIVDHTPLPELISDGSISVETVESIRQETTYALESVTESAATKPANNATAKFVETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137395_106504282	3300012917	Vadose Zone Soil	APSEEPVHYVADPGLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137395_110422862	3300012917	Vadose Zone Soil	SVETVESIRQETTYALESVTESAATKPANNATAKVVETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137396_101093611	3300012918	Vadose Zone Soil	PATEEVQPEAALTYDFVSEAPSEEPVNYVPDPALVSNEVVAHNPLPELISDGSISPETVETIRQDTIYAMESVTEPVATKPANATGKITETAQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137396_102128662	3300012918	Vadose Zone Soil	ETIRQDTLYALESVTQPVVEKAADIPVKIAETSQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137359_101115273	3300012923	Vadose Zone Soil	GLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVTENVREKPAETSAKISETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137413_100168465	3300012924	Vadose Zone Soil	EPVLTYDFVSEAPSEEPVTYVPDPALVGNEIVEHNPLPELISDGSISPETVETIRQDTIYALESVIEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137419_102147622	3300012925	Vadose Zone Soil	GLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137419_105463572	3300012925	Vadose Zone Soil	LVSNEVVAHNPLPELISDGSISPETVETIRQDTIYAMESVTEPVATKPANATAKITETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137419_116955881	3300012925	Vadose Zone Soil	LVSNEVVAHNPLPELISDGSISPETVETIRQDTIYAMESVTEPIVAKPADTTPKIGESSQHDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137416_101006491	3300012927	Vadose Zone Soil	EVVAHNPLPELISDGSISPETVETIRQDTIYAMESVTEPIVAKPADTTPKIGESSQHDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137416_105517922	3300012927	Vadose Zone Soil	TSETSVEEPAQLEAVQPEAAPTYDFVSEAPSEEPVHYVSEPELVQNEVVAHNPLPDLISDGSISPETVESIRQSTTYALESVTKSAVKKPESAVKIAEASQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137416_109913861	3300012927	Vadose Zone Soil	AAQPEAALTYDFVSEAPSEEPVHYVPEPELVQNEVVAHNPLPDLISDGSISPETVENIRQTTTYALGSVTKPVVEKPAESAVKIAEASQQDMDALVANVLAKMSPEMLKAVTREILKPVVAAMIRDEINAKKS*
Ga0137420_11360781	3300015054	Vadose Zone Soil	MVSNEVVAHNPLPELISDGSISPETVETIRQDTIYAMESVTEPVATKPANATGKITETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137418_102851951	3300015241	Vadose Zone Soil	LISDGSISPETVETIRQETSYALESVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0137412_100300781	3300015242	Vadose Zone Soil	PETVETIRQDTIYALESVIEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAARIRDEINAKKS*
Ga0137412_102048051	3300015242	Vadose Zone Soil	PETVETIRQDTIYALESVIEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS*
Ga0179590_11948311	3300020140	Vadose Zone Soil	VPNEQNDEPVLEQLPVVEEVQSEAALTYDFVSEAPSEEPVSYVPDPGLVGNEIVDHTPLPELISDGSISLETVESIRQETTYALESVTESAATKPANNATAKVVETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0179594_101143272	3300020170	Vadose Zone Soil	EPVSYDFISEAPSEEPVHYVADPGLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0179592_101766302	3300020199	Vadose Zone Soil	DLISDGSISPETVETIRQETSYALESVTENVREKPAETSAKISETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0179592_104099671	3300020199	Vadose Zone Soil	HDPLPDLISDGSISPETVETIRQETSYALESVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210407_106961861	3300020579	Soil	PAQREPAQLEALQTEAAPTYDFVSEAPSEEPVHYVPEPELVQNETVAHNPLPDLISDGSISPETVESIRQETTYALESVTKAVAEKPAEIAVKIAEASQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210407_109920971	3300020579	Soil	VETIRQDTIYALESVTQPAVEKAADIPLKTAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210407_111069081	3300020579	Soil	VVEEPAVPEPSQLEGVQAEATLTYDFVSEAPSEEPVHYVPEPELVQNEVVAHSPLPDLISDGSISPETVENIRQETSYALESVAQAVAKKPAESAVKIAEAPQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210403_103055731	3300020580	Soil	NEVVTHSPLPDLISDGSISPETVENIRQETSYALESVAQAVAKKPAESAVKIAETPQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210403_104660391	3300020580	Soil	PVHYVPEPELVQNEVVAHSPLPDLISDGSISPETVESIRQETSYALESVTQTVAKKPAESAVKIADASQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210403_113299551	3300020580	Soil	EAPSEEPVHYVPDPGLVQNEIVAHNPLPGLISDGSISPETVETIRQDTIYALESVTQPAVEKAADIPLKTAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210406_110170301	3300021168	Soil	QPETLQAEAAPTYDFVSEAPSEEPVHYVPDPGLVQNEVVAHNPLPDLISDGSISPETVENIRQETSYALESVAQAVVEKSAKSAVKIAEPSQRDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210406_112161301	3300021168	Soil	ELVQNEVVAHNPLPDLISDGAISPETVENIRQTTTYALGSVTKSVVVEKPAESAVKIAEASQQDMDALVASVLAKMSPEMLKAVTREILKPVVAAMIRDEINAKKP
Ga0210400_101521211	3300021170	Soil	VQNEEVAHNPLPELISDGSISPETVETIRQDTIYALESVTQPVVEKAADIPAKIAETPQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKP
Ga0210405_103780731	3300021171	Soil	PDPGLVSNEVVEHNPLPELISEGSISPETVENIRQETSYALESVTQTVAKKPAESAVKIAETPQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210405_104241541	3300021171	Soil	YVPEPELVQNEVVAHSPLPDLISDGSISPETVESIRQETSYALESVTQAVAKKPAESAVKIAEAPQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0210396_103828192	3300021180	Soil	VSYTPDPALVGNEIVDHNPLPGLISDGSISPETVETIRHDTIYALESVTADVAEKPAEIPAGKIPDSSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIREEINA
Ga0210394_108441821	3300021420	Soil	SISPETIESIRQETSYALESVAPPELEKPAEAAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINTKKS
Ga0210384_117847681	3300021432	Soil	LESVTPAVEKAADIPLKTAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0137417_11643951	3300024330	Vadose Zone Soil	AAQPEAALTYDFVSEAPSEEPVHYVPEPELVQNEVVAHNPLPDLISDGSISPETVENIRQTTTYALGSVTKPVVEKPAESAVKIAEASQQDMDALVANVLAKMSPEMLKAVTREILKPVVAAMIRDEINAKKS
Ga0137417_13800972	3300024330	Vadose Zone Soil	VEEPAQLEAVQPEAAPTYDFVSEAPSEEPVHYVSEPELVQNEVVAHNPLPDLISDGSISPETVESIRQSTTYALESVTKSAVKKPESAVKIAEASQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0209438_12074471	3300026285	Grasslands Soil	EPVSYDFISEAPSEVPVHYVADPGLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0257168_10963111	3300026514	Soil	AAPTYDFVSEAPSEEPVHYVSEPELVQNEVVAHNPLPDLISDGSISPETVESIRQSTTYALESVTKSAVKKPESAVKIAEASQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0209160_13364281	3300026532	Soil	PQIEEALQAAEQAQTEEPLSYDFISEAPSEEPVHYVADPGLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVTENVREKPAETSAKISETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0179587_103384622	3300026557	Vadose Zone Soil	PDLISDGSISPETVETIRQETSYALESVTENVREKPAETSAKISETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0179587_104160742	3300026557	Vadose Zone Soil	QAQTEEPVSYDFISEAPSEEPVHYVADPGLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVAPLAVEKPAETAAKISETSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0208983_10844341	3300027381	Forest Soil	NPLPELISDGSISPETVETIRQDTIYALESVTEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0209179_10014821	3300027512	Vadose Zone Soil	TIRQDTIYALESVIEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0209523_10751082	3300027548	Forest Soil	YDFVSEAPSEEPVHYSPDPGLVQNEIVEHNPLPELISDGSISPETVETIRQDTIYALESVTQPVVEKAADTPVKVAETPQADMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKP
Ga0209219_11742141	3300027565	Forest Soil	EPVHYVADPGLVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVVKPAVEQPVEAAAKISDTSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINGKKS
Ga0209733_10985181	3300027591	Forest Soil	PGLVQNEIVEHNPLPGLISDGSISPETVETIRHDTIYALESVTADVAVKPAEIPATKVADASQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0209528_10114912	3300027610	Forest Soil	PELISDGSISPETVESIRQETSYALESVSQNIVEKPAEASVKISETSQQDMDSLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEIKAKKS
Ga0209422_11452351	3300027629	Forest Soil	SGPHVEQPEVEPEPEPAVTYDFISEAPSEEPVHYVPDPGLVQNEIVEHNPLPGLISDGSISPETVETIRHDTIYALESVTADVAVKPAEIPATKVADASQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0208988_10539732	3300027633	Forest Soil	PETVETIRQDTIYALESVTEPVVAKPAHATAKIAESSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0209625_10037964	3300027635	Forest Soil	SDGSISPETVETIRQDTIYALESVTQPAVEKAADIPVKIAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0209736_10387381	3300027660	Forest Soil	ETSYALESVVKPAVEQPVEAAAKISDTSQQDMDTLVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINGKKS
Ga0137415_101243113	3300028536	Vadose Zone Soil	TIRQDTIYALESVTQPVVEKAADIPAKIAETSQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0137415_102304702	3300028536	Vadose Zone Soil	AHNPLPDLISDGSISPETVENIRQTTTYALGSVTKPVVEKPAESAVKIAEASQQDMDALVANVLAKMSPEMLKAVTREILKPVVAAMIRDEINAKKS
Ga0222749_102266361	3300029636	Soil	DGSISPETVETIRQDTIYALESVTQPAVEKAADIPLKTAETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0222749_104589831	3300029636	Soil	PALISNSSHLVEHNPLPELISDGSISPETVESIRQETTYALESVVEPVKDKPAGTVAKIADSSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0307477_100877841	3300031753	Hardwood Forest Soil	PELISEGSISPETVENIRQETSYALESVAQAVAKKPAESAVKIAEAPQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0307479_101289031	3300031962	Hardwood Forest Soil	ISDGSISPETVESIRQETTYALESVVEPVEGKPAGTVAKIADSSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0307470_119537221	3300032174	Hardwood Forest Soil	LVGNEIASHDPLPDLISDGSISPETVETIRQETSYALESVTEDIPEKPAETSAKISETSQQDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0307471_1002009033	3300032180	Hardwood Forest Soil	SEAPSEEPVHYVPDPGLVQNETVEHNPLPDLISDGSISPETAENIRQETSYALESVAQAVVEKSAKSAVKIAEPSQPDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINVKKS
Ga0307471_1027055061	3300032180	Hardwood Forest Soil	PDPGLVQNEVVAHNPLPDLISDGSISPETVENIRQETSYALESVAQAVVEKSAKSAVKIAEPSQRDMDALVANVLAKMSPEMLQAVTREILKPVVAAMIRDEINAKKS
Ga0307471_1039762261	3300032180	Hardwood Forest Soil	EEASNEPVTYVSDPALVRNEVVISNPLPDLISDGSISPETVETIREETTSALESVPEPVIETAKGAATKAPQQSVAEMDALVARVLAKMSPEMLQAVTREILKPVVEAMIRDEIGAKKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096700

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences