Basic Information | |
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Family ID | F096548 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 73 residues |
Representative Sequence | MTLLPNHALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFASRRRAHSRAPGPESLSLGSLGV |
Number of Associated Samples | 34 |
Number of Associated Scaffolds | 98 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 34.62 % |
% of genes near scaffold ends (potentially truncated) | 54.81 % |
% of genes from short scaffolds (< 2000 bps) | 72.12 % |
Associated GOLD sequencing projects | 34 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.25 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (62.500 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (40.385 % of family members) |
Environment Ontology (ENVO) | Unclassified (79.808 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (43.269 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 18.75% β-sheet: 0.00% Coil/Unstructured: 81.25% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.25 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 98 Family Scaffolds |
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PF05598 | DUF772 | 2.04 |
PF00717 | Peptidase_S24 | 2.04 |
PF13676 | TIR_2 | 1.02 |
PF05257 | CHAP | 1.02 |
PF01844 | HNH | 1.02 |
PF13495 | Phage_int_SAM_4 | 1.02 |
PF00550 | PP-binding | 1.02 |
PF12680 | SnoaL_2 | 1.02 |
PF09965 | DUF2199 | 1.02 |
PF14237 | GYF_2 | 1.02 |
PF06296 | RelE | 1.02 |
PF07661 | MORN_2 | 1.02 |
PF14137 | DUF4304 | 1.02 |
PF14300 | DUF4375 | 1.02 |
PF03372 | Exo_endo_phos | 1.02 |
PF01926 | MMR_HSR1 | 1.02 |
PF01551 | Peptidase_M23 | 1.02 |
PF13673 | Acetyltransf_10 | 1.02 |
PF13751 | DDE_Tnp_1_6 | 1.02 |
COG ID | Name | Functional Category | % Frequency in 98 Family Scaffolds |
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COG2849 | Antitoxin component YwqK of the YwqJK toxin-antitoxin module | Defense mechanisms [V] | 1.02 |
COG4737 | Uncharacterized conserved protein | Function unknown [S] | 1.02 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 62.50 % |
All Organisms | root | All Organisms | 37.50 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300002835|B570J40625_100128676 | All Organisms → cellular organisms → Bacteria | 2978 | Open in IMG/M |
3300005093|Ga0062594_101028771 | Not Available | 796 | Open in IMG/M |
3300005187|Ga0066675_11234389 | All Organisms → cellular organisms → Bacteria | 553 | Open in IMG/M |
3300005445|Ga0070708_100928876 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium | 816 | Open in IMG/M |
3300005450|Ga0066682_10700387 | Not Available | 622 | Open in IMG/M |
3300005544|Ga0070686_100140642 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales | 1680 | Open in IMG/M |
3300005585|Ga0049084_10238821 | Not Available | 613 | Open in IMG/M |
3300006059|Ga0075017_100050041 | All Organisms → cellular organisms → Bacteria → PVC group | 2805 | Open in IMG/M |
3300006059|Ga0075017_100291252 | Not Available | 1203 | Open in IMG/M |
3300009012|Ga0066710_102266178 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 791 | Open in IMG/M |
3300009181|Ga0114969_10044067 | All Organisms → cellular organisms → Bacteria | 3014 | Open in IMG/M |
3300011271|Ga0137393_10515278 | Not Available | 1026 | Open in IMG/M |
3300012096|Ga0137389_10900295 | Not Available | 759 | Open in IMG/M |
3300012201|Ga0137365_10826341 | Not Available | 677 | Open in IMG/M |
3300012207|Ga0137381_11084738 | Not Available | 689 | Open in IMG/M |
3300012349|Ga0137387_11137534 | Not Available | 554 | Open in IMG/M |
3300012361|Ga0137360_11242219 | Not Available | 644 | Open in IMG/M |
3300012361|Ga0137360_11714768 | Not Available | 534 | Open in IMG/M |
3300012362|Ga0137361_10287295 | All Organisms → cellular organisms → Bacteria | 1504 | Open in IMG/M |
3300012362|Ga0137361_10325009 | Not Available | 1410 | Open in IMG/M |
3300012362|Ga0137361_10432332 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → unclassified Roseimicrobium → Roseimicrobium sp. ORNL1 | 1209 | Open in IMG/M |
3300012362|Ga0137361_10440551 | Not Available | 1197 | Open in IMG/M |
3300012362|Ga0137361_10642951 | Not Available | 971 | Open in IMG/M |
3300012362|Ga0137361_10649309 | Not Available | 965 | Open in IMG/M |
3300012362|Ga0137361_10964229 | Not Available | 772 | Open in IMG/M |
3300012362|Ga0137361_11074633 | Not Available | 725 | Open in IMG/M |
3300012362|Ga0137361_11116835 | Not Available | 709 | Open in IMG/M |
3300012362|Ga0137361_11151642 | Not Available | 697 | Open in IMG/M |
3300012362|Ga0137361_11241368 | Not Available | 669 | Open in IMG/M |
3300012362|Ga0137361_11344161 | Not Available | 638 | Open in IMG/M |
3300012362|Ga0137361_11374255 | Not Available | 630 | Open in IMG/M |
3300012362|Ga0137361_11478371 | Not Available | 602 | Open in IMG/M |
3300012362|Ga0137361_11540692 | Not Available | 586 | Open in IMG/M |
3300012362|Ga0137361_11590880 | Not Available | 574 | Open in IMG/M |
3300012362|Ga0137361_11928840 | Not Available | 507 | Open in IMG/M |
3300012917|Ga0137395_10658869 | Not Available | 757 | Open in IMG/M |
3300012917|Ga0137395_10659622 | Not Available | 757 | Open in IMG/M |
3300012930|Ga0137407_12111009 | Not Available | 538 | Open in IMG/M |
3300014969|Ga0157376_11323370 | Not Available | 751 | Open in IMG/M |
3300017656|Ga0134112_10259876 | Not Available | 691 | Open in IMG/M |
3300018468|Ga0066662_12786439 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 518 | Open in IMG/M |
3300019888|Ga0193751_1036793 | All Organisms → cellular organisms → Bacteria | 2230 | Open in IMG/M |
3300019888|Ga0193751_1080442 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428 | 1303 | Open in IMG/M |
3300019888|Ga0193751_1177600 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 736 | Open in IMG/M |
3300019888|Ga0193751_1186517 | Not Available | 708 | Open in IMG/M |
3300019890|Ga0193728_1185040 | Not Available | 887 | Open in IMG/M |
3300019890|Ga0193728_1339609 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWC2_39_11 | 546 | Open in IMG/M |
3300020016|Ga0193696_1094934 | Not Available | 769 | Open in IMG/M |
3300020059|Ga0193745_1002453 | All Organisms → cellular organisms → Bacteria → PVC group | 3836 | Open in IMG/M |
3300020059|Ga0193745_1003188 | All Organisms → cellular organisms → Bacteria | 3420 | Open in IMG/M |
3300020059|Ga0193745_1003594 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 3249 | Open in IMG/M |
3300020059|Ga0193745_1003826 | All Organisms → cellular organisms → Bacteria | 3158 | Open in IMG/M |
3300020059|Ga0193745_1003988 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 3100 | Open in IMG/M |
3300020059|Ga0193745_1005406 | Not Available | 2715 | Open in IMG/M |
3300020059|Ga0193745_1006049 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiota incertae sedis → Lentimonas | 2582 | Open in IMG/M |
3300020059|Ga0193745_1006049 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiota incertae sedis → Lentimonas | 2582 | Open in IMG/M |
3300020059|Ga0193745_1006121 | All Organisms → cellular organisms → Bacteria | 2565 | Open in IMG/M |
3300020059|Ga0193745_1006386 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 2519 | Open in IMG/M |
3300020059|Ga0193745_1007270 | Not Available | 2369 | Open in IMG/M |
3300020059|Ga0193745_1007270 | Not Available | 2369 | Open in IMG/M |
3300020059|Ga0193745_1007807 | Not Available | 2292 | Open in IMG/M |
3300020059|Ga0193745_1008185 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Lacipirellula → Lacipirellula limnantheis | 2245 | Open in IMG/M |
3300020059|Ga0193745_1008787 | Not Available | 2172 | Open in IMG/M |
3300020059|Ga0193745_1009173 | Not Available | 2129 | Open in IMG/M |
3300020059|Ga0193745_1009173 | Not Available | 2129 | Open in IMG/M |
3300020059|Ga0193745_1009235 | All Organisms → cellular organisms → Bacteria | 2121 | Open in IMG/M |
3300020059|Ga0193745_1013421 | Not Available | 1775 | Open in IMG/M |
3300020059|Ga0193745_1016184 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1620 | Open in IMG/M |
3300020059|Ga0193745_1018392 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 1521 | Open in IMG/M |
3300020059|Ga0193745_1018435 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Haloferula → Haloferula luteola | 1519 | Open in IMG/M |
3300020059|Ga0193745_1020357 | Not Available | 1446 | Open in IMG/M |
3300020059|Ga0193745_1022404 | Not Available | 1379 | Open in IMG/M |
3300020059|Ga0193745_1022809 | Not Available | 1367 | Open in IMG/M |
3300020059|Ga0193745_1026972 | Not Available | 1260 | Open in IMG/M |
3300020059|Ga0193745_1027076 | Not Available | 1258 | Open in IMG/M |
3300020059|Ga0193745_1047683 | Not Available | 940 | Open in IMG/M |
3300020059|Ga0193745_1051856 | Not Available | 898 | Open in IMG/M |
3300020059|Ga0193745_1057102 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena → unclassified Pseudanabaena → Pseudanabaena sp. | 853 | Open in IMG/M |
3300020059|Ga0193745_1058667 | Not Available | 841 | Open in IMG/M |
3300020059|Ga0193745_1061138 | Not Available | 823 | Open in IMG/M |
3300020059|Ga0193745_1064576 | Not Available | 799 | Open in IMG/M |
3300020059|Ga0193745_1068674 | Not Available | 774 | Open in IMG/M |
3300020059|Ga0193745_1074048 | Not Available | 742 | Open in IMG/M |
3300021080|Ga0210382_10510197 | Not Available | 533 | Open in IMG/M |
3300021086|Ga0179596_10016398 | All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Thermodesulfobacteria → Thermodesulfobacteriales → Thermodesulfobacteriaceae → Thermosulfurimonas → Thermosulfurimonas dismutans | 2582 | Open in IMG/M |
3300021086|Ga0179596_10016398 | All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Thermodesulfobacteria → Thermodesulfobacteriales → Thermodesulfobacteriaceae → Thermosulfurimonas → Thermosulfurimonas dismutans | 2582 | Open in IMG/M |
3300021086|Ga0179596_10025387 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 2213 | Open in IMG/M |
3300021086|Ga0179596_10025387 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 2213 | Open in IMG/M |
3300021086|Ga0179596_10026972 | Not Available | 2165 | Open in IMG/M |
3300021086|Ga0179596_10028574 | Not Available | 2122 | Open in IMG/M |
3300021086|Ga0179596_10028574 | Not Available | 2122 | Open in IMG/M |
3300021086|Ga0179596_10163090 | Not Available | 1067 | Open in IMG/M |
3300021086|Ga0179596_10174872 | All Organisms → cellular organisms → Bacteria | 1034 | Open in IMG/M |
3300021086|Ga0179596_10219108 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 931 | Open in IMG/M |
3300021086|Ga0179596_10267597 | Not Available | 847 | Open in IMG/M |
3300021086|Ga0179596_10327017 | Not Available | 767 | Open in IMG/M |
3300021086|Ga0179596_10412045 | Not Available | 682 | Open in IMG/M |
3300021404|Ga0210389_11088914 | Not Available | 618 | Open in IMG/M |
3300022208|Ga0224495_10259303 | Not Available | 710 | Open in IMG/M |
3300027512|Ga0209179_1018423 | Not Available | 1333 | Open in IMG/M |
3300027512|Ga0209179_1110415 | All Organisms → cellular organisms → Bacteria | 613 | Open in IMG/M |
3300032050|Ga0315906_10184068 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1983 | Open in IMG/M |
3300034101|Ga0335027_0302089 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1080 | Open in IMG/M |
3300034103|Ga0335030_0189051 | All Organisms → cellular organisms → Bacteria | 1441 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 40.38% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 40.38% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 1.92% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.92% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.92% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.92% |
Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.96% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater | 0.96% |
Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 0.96% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 0.96% |
Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 0.96% |
Sediment | Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment | 0.96% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.96% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.96% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.96% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.96% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.96% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.96% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300002835 | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) | Environmental | Open in IMG/M |
3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
3300005187 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 | Environmental | Open in IMG/M |
3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
3300005450 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 | Environmental | Open in IMG/M |
3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
3300005585 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF | Environmental | Open in IMG/M |
3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
3300009181 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG | Environmental | Open in IMG/M |
3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
3300012096 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG | Environmental | Open in IMG/M |
3300012201 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG | Environmental | Open in IMG/M |
3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
3300012917 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG | Environmental | Open in IMG/M |
3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
3300017656 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015 | Environmental | Open in IMG/M |
3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
3300019888 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2 | Environmental | Open in IMG/M |
3300019890 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1 | Environmental | Open in IMG/M |
3300020016 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1 | Environmental | Open in IMG/M |
3300020059 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2 | Environmental | Open in IMG/M |
3300021080 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo | Environmental | Open in IMG/M |
3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
3300022208 | Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1 | Environmental | Open in IMG/M |
3300027512 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) | Environmental | Open in IMG/M |
3300032050 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122 | Environmental | Open in IMG/M |
3300034101 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 | Environmental | Open in IMG/M |
3300034103 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
B570J40625_1001286761 | 3300002835 | Freshwater | MNETPNHALQRTPGFGVQLPSAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGS |
Ga0062594_1010287711 | 3300005093 | Soil | VSPFSDSLNQALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLDTLLGSKG* |
Ga0066675_112343891 | 3300005187 | Soil | NHALQRTPGFGVQLPSAAVVRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSLAAC* |
Ga0070708_1009288761 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MNTANCKSSKAPNHALQRTPGFGVQLPGAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGS |
Ga0066682_107003871 | 3300005450 | Soil | PNHALQRTPGFGVQLPGAAVVRPAQSRAVLPALKPGTARAFASRRRAHTRAPGPESLSLGSLGVFTRLSR* |
Ga0070686_1001406426 | 3300005544 | Switchgrass Rhizosphere | MAAPMTATPNQALQRTPGFGVQLPGAAVVRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSLG |
Ga0049084_102388212 | 3300005585 | Freshwater Lentic | MTATPNHALQRTPGFGVQLPSAALIRPAQSRAVLPAMKPGTARAFALRRRAQNRAPGPESLSLGSLGVA |
Ga0075017_1000500412 | 3300006059 | Watersheds | MTPNHALQRTPGFGVQLPGAALVRPAQSRAVRLAMKPGTARAFASRRRAPMRAPGPESLSLGSLGVATRLL* |
Ga0075017_1002912522 | 3300006059 | Watersheds | MRPETPNHALQRTPGFGVQLPGAAFVRPAQSRAVRPAMKPGTARAFALRRRAHTRAPGPESLSLGSLGVFTHSEK* |
Ga0066710_1022661782 | 3300009012 | Grasslands Soil | MITPPNHALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHTLAPGPESLSLGSLGATFAFAFQTKP |
Ga0114969_100440674 | 3300009181 | Freshwater Lake | MDATPNHALQRTPGFGVQLPRAALVRPAQSRAVRPAMKPGTARAFASRRRAHSRAPGPESLSLGSLGVATRFL* |
Ga0137393_105152781 | 3300011271 | Vadose Zone Soil | LQSLTTSVISLASRRQTKPATPNHALQRTPGFGVQLPSAAVVRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGVVARLSW* |
Ga0137389_109002951 | 3300012096 | Vadose Zone Soil | SSSCTLTTRANTDESATPNHALQRTPGFGVQLPSAAVVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGVFTRLSR* |
Ga0137365_108263411 | 3300012201 | Vadose Zone Soil | MKTPNHALQRTPGFGVQLPSAALIRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGS |
Ga0137381_110847382 | 3300012207 | Vadose Zone Soil | HALQRTPGFGVQLPGAAVVRPSQSRAVLPAMKPGTARAFALRRRSHIRAPGPESLSLGSLGVVAPLFRERSPMKTPNTSVS* |
Ga0137387_111375341 | 3300012349 | Vadose Zone Soil | MLSTQTATPNHALQRTPGFGVQLPSAALVRPAQSRAVLPAMKPSTARACASRRRAHSRVPGPESLSLG |
Ga0137360_112422193 | 3300012361 | Vadose Zone Soil | LQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHSRVPGPESLSFGSLGVARIIPPMSAEP* |
Ga0137360_117147681 | 3300012361 | Vadose Zone Soil | LQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHRRAPGPESLSLGSLGDFTHAIQ* |
Ga0137361_102872953 | 3300012362 | Vadose Zone Soil | MKLRHEQRPNHALQRTPGFGVQLPGAAVIRPAQSRAVLPAMKPGTARAFALRRRAHSRVPGPESLSLGSLGVATRIC* |
Ga0137361_103250093 | 3300012362 | Vadose Zone Soil | MTQLQMTATPNHALQRTPGFGVQLPGTAFVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGVARVF* |
Ga0137361_104323322 | 3300012362 | Vadose Zone Soil | MTATPNHALQRTPGFGVQFPSAAVARPAQSRAVRPAMKPGTARAFASRRRALIRAPGPESLSLGSLGVARVIP* |
Ga0137361_104405512 | 3300012362 | Vadose Zone Soil | MTAATPNHALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFALRRRAHSRVPGPESLSFGSLGGFTS* |
Ga0137361_106429511 | 3300012362 | Vadose Zone Soil | MQTNQTPNHALQRTPGFGVQLPSAALVRPTQSRVVLPAMKPGTACAFALRRRAHGRAPGPES |
Ga0137361_106493091 | 3300012362 | Vadose Zone Soil | MTLLPNHALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFASRRRAHSRAPGPESLSLGSLGV |
Ga0137361_109642291 | 3300012362 | Vadose Zone Soil | TPNHALQRTPGFGVQLPSAAVVRPAQSRAVRPAMKPGTARAFALRRRAPSRAPGPESLSLGSLGDTA* |
Ga0137361_110746331 | 3300012362 | Vadose Zone Soil | MDTHLTPEPATPNHALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGP |
Ga0137361_111168352 | 3300012362 | Vadose Zone Soil | MTATPNHALQRTPGFGVQLPRAAVVRPAPSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGHF |
Ga0137361_111516421 | 3300012362 | Vadose Zone Soil | MSPNLPLNDLLPTPATPNHALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGS |
Ga0137361_112413681 | 3300012362 | Vadose Zone Soil | LQRTPGFGVQLPSAAVVRPAQSRAVLPAMKPGTARAFALRRYASMRAPGPESLSLGSLGVARVIQH* |
Ga0137361_113441611 | 3300012362 | Vadose Zone Soil | PGFGVQLPSAALIRPAQSRAVRPAMKPGTARAFALRRRAHTRAPGPESLSLGPLGDFARAIQ* |
Ga0137361_113742551 | 3300012362 | Vadose Zone Soil | MTATPNHALQRTPGFGVQLPSAALIRPAQSRAVLPTMKPGTARAFALRRRAHGRAPGPESLSLGSLGVARVHR |
Ga0137361_114783713 | 3300012362 | Vadose Zone Soil | AVVRPAQSRAVRPAMKPGTARAFALRRRAHSRVPGPESLSFGSLGVARIIPPMSAEP* |
Ga0137361_115406921 | 3300012362 | Vadose Zone Soil | TPGFGVQLPTAALIRPAQSRAVLPAMKPGTARAFASRRRAHTRAPGPESLSLGSLGVATRLA* |
Ga0137361_115908801 | 3300012362 | Vadose Zone Soil | NHALQRTPGFGVQLPSAAVVRPAQSRAVLPAMKPGTARAFALRRRAHSRVPGPESLSLGSLGVFRAPIHTQII* |
Ga0137361_119288401 | 3300012362 | Vadose Zone Soil | STESNRTPNHALQRTPGFGVQLPSAAVVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGVFTRLSR* |
Ga0137395_106588692 | 3300012917 | Vadose Zone Soil | MNSPATPNHALQRTPGFSVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHRRAPGPESLSLGSL |
Ga0137395_106596223 | 3300012917 | Vadose Zone Soil | MPSPALQRTPGFGVQLPSAALVRPAQSRAVLPAMKPGTARAFALRRRAHTRAPGPESL |
Ga0137407_121110091 | 3300012930 | Vadose Zone Soil | QRLIRMTATPNHALQRTPGFGVQLPGAALIRPAQSRAVRPALKPGTARAFASRRRALMRAPGPESLSLGSLGVADVLFTNEQ* |
Ga0157376_113233701 | 3300014969 | Miscanthus Rhizosphere | MTLRNQALQRTPGFGVQLPSAALIRPQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGDSPHAHEYWLPILS* |
Ga0134112_102598761 | 3300017656 | Grasslands Soil | HVSTESNRTPNHALQRTPGFGVQLPNAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGVVAPLFRERSP |
Ga0066662_127864392 | 3300018468 | Grasslands Soil | MNTATPNHALQRTPGFGVQLPSAAVVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGAATRT |
Ga0193751_10367932 | 3300019888 | Soil | MRRPNQALQRTPGFGVQLPNAAVVRPAQSRAVLPTMKPGTARAFASRRRAHTRAPGPESLSLGSLGAC |
Ga0193751_10804422 | 3300019888 | Soil | MNRFQAPTPNHALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALPRCAHSRVPGPESLSLGSLGVTACLS |
Ga0193751_11776001 | 3300019888 | Soil | MSDYPRAPNHALQRTPGFGVQLPGAAVVRPAQSRAVLPAMKPGTARAFALRRRAHSRVSG |
Ga0193751_11865171 | 3300019888 | Soil | MTPTPNHALQRTPGFGVQLPSAAVARPAQSRAVRPAMKPRTARAFALRRRAHTRAPGPGVAELGVV |
Ga0193728_11850402 | 3300019890 | Soil | ALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAPMRAPGPESLSLGSLGVATRTV |
Ga0193728_13396092 | 3300019890 | Soil | PESERTPNQALQRTPGFGVQLPSAGLVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGDSARIL |
Ga0193696_10949341 | 3300020016 | Soil | EAVTPNHALQRTPGFGVQLPGAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGVFTRLSR |
Ga0193745_10024533 | 3300020059 | Soil | MLLLNHTPNQALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFALRRRAHSRASGPESLSLGSLGVIARVLE |
Ga0193745_10031883 | 3300020059 | Soil | MNRPPNTALQRTPGFGVQLPGAAFIRPAQSRAVLPAMKPGTARAFASRRHALMRAPGPESLSFWSLGHYHALCRTHV |
Ga0193745_10035944 | 3300020059 | Soil | MTSIPITATPNQALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRHAHSRTPGPESLSFGSLGVFTRLSL |
Ga0193745_10038264 | 3300020059 | Soil | MKHPRRANQALQRTPGFGVQFPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHSRASGPESLSFGSLGVSHTFVLIPSGS |
Ga0193745_10039882 | 3300020059 | Soil | MTPNNALQRTPGFGVQLPRAALIRPAQSRALLPALKPGTARAFALRRRAPMRAPGPEPLS |
Ga0193745_10054062 | 3300020059 | Soil | MTNAPNHALQRTPGFGVQLPSAAEVRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGDFAHLP |
Ga0193745_10060492 | 3300020059 | Soil | MNPSPNHALQRTPGFGVQLPSAVLIRPAQSRAVLPAMKPGTARAFASRRRGHIRVPGPESLSLGSLGA |
Ga0193745_10060495 | 3300020059 | Soil | MTRQSQTPATPNHALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFASRRGAHSRAPGPESLSLGSLGDTRRLP |
Ga0193745_10061212 | 3300020059 | Soil | MTRTPPNHALQRTPGFGVQLPSAALIRPAQSRAVLPAMKPGTARAFALRRRAQSRAPGPESLSLGSLGHAAHIL |
Ga0193745_10063863 | 3300020059 | Soil | MNAPDQALQRTPGFGVQFPGAAVVRPAQSRAVLPARVKGLRPHAAGAPGTARAFALRRRARSRAPGPESLSLGSLGVAPRLL |
Ga0193745_10072702 | 3300020059 | Soil | MNSNPTSPNHALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLDGQP |
Ga0193745_10072704 | 3300020059 | Soil | MNASKNNPPSKSPNHALPRTPGFGVQLPHAALIRPAQSRAVLPAMKPGTARAFASRRRAHSRAPGPESLSLGSLGDFTHLP |
Ga0193745_10078072 | 3300020059 | Soil | MTATPNQAPQRTPGFGVQLPSAALIRPAQSRAVRPAMKPGTARAFALRRRAHNRAPGPESLSLGSLGDLHP |
Ga0193745_10081851 | 3300020059 | Soil | MRDPKHQRSNHALQRTPGFGVQLPGAAFVRPAQSRAVLPAMKPGTARAFASRRRAHTRAPGPESLSLRSLGVFTRLSR |
Ga0193745_10087873 | 3300020059 | Soil | MNQIQEPATPNQALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFASRRRAHHRAPGPESLSLGSLGH |
Ga0193745_10091732 | 3300020059 | Soil | MRTQPNHALQRTPGFGVQLPSAALIRPAQSRAVRPAMKPGTARAFASRRRAHSRAPGPESLSLGSLGGIRSYGHNREFEATP |
Ga0193745_10091735 | 3300020059 | Soil | MNQTMTLNHALQRTPGFGVQLPSAALIRPAQSRAVLPAMKPGTARAFASRRRAHRRAPGPESLSLGSLGASP |
Ga0193745_10092352 | 3300020059 | Soil | MRCSELRAFGVQLPGAAFVRPAQSRAVRPAMKPGTARAFASRRHAHTRAPGPESLSLESLGYHP |
Ga0193745_10134213 | 3300020059 | Soil | MTPNHALQRTPGFGVQLPGAALIRPAQSRAVLPALKPGTARAFASRRRAHSRAPGPESLSLGSLGDFAHLP |
Ga0193745_10161843 | 3300020059 | Soil | MTTPLNHALQRTPGFGVQLPRAALVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLG |
Ga0193745_10183922 | 3300020059 | Soil | MTALSKFRPKKSYSMNPQTPNHALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGLLGD |
Ga0193745_10184353 | 3300020059 | Soil | MEQSKFQSAKLPVFERTSPNQALQRTPGFGVQLPGAALVRPAQSRAVLPPIKPGTARAFALRRRAHTRAPGPESLSLGSLG |
Ga0193745_10203571 | 3300020059 | Soil | PGFGVQLPGTALVRPAQSRAVLPAMKPGTARAFALRRRAQNRAPGPESLSLGSLGDFRTS |
Ga0193745_10224042 | 3300020059 | Soil | MTSTETPNHALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGDSDALSTTEANQCS |
Ga0193745_10228093 | 3300020059 | Soil | MTVWPTNHALQRTPGFGVQLPSAAVVRPAQSRAVRPAMKPGTARAFASRRRAHSRAPGPESLSLGSLGVATRSVF |
Ga0193745_10269723 | 3300020059 | Soil | MISITTSPNHALQRTPGFGVQLPSAALIRPAQSRAVRPTMKPGTARAFASRRRAQSRAPGPESLSLGSLGDYAQHGPYTRRDSL |
Ga0193745_10270761 | 3300020059 | Soil | MALAITLPASMHADTKSPNHALQRTPGFGVQLPSAAVVRPAQSRAVRPAMKPGTARAFALRRRAHSRAP |
Ga0193745_10476831 | 3300020059 | Soil | MIGGIYRKSDSRKWPNHALQRTPGFGVQLPGAALIRPAQSRAVRPAMKPGTARAFASRRRAHRRAPGPESLSLGSLGVIT |
Ga0193745_10518562 | 3300020059 | Soil | MTATPNHALQRTPGFGVQLPSAALVRPAQSRAVLPAMKPGTARAFASRRRAHSRAPGPE |
Ga0193745_10571021 | 3300020059 | Soil | MFTQETLASTPPNHALQRTPGFGVQLPRAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPASLS |
Ga0193745_10586672 | 3300020059 | Soil | SPESERTPNQALQRTPGFGVQLPGAALVRPAQSRAVLPAMKPGTARAFASRRRAQSRAPGPESLSLGSLGVTTSTL |
Ga0193745_10611381 | 3300020059 | Soil | YKNRPEAGIEPSPNQALQRTPGFGVQLPSAALIRPAQSRAVLPATKPGTARAFASRRRAHSRAPGPESLSLGSLGVRSLL |
Ga0193745_10645761 | 3300020059 | Soil | WYLSIGSSFRRSVEDWQKLKRLNQALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGVAHV |
Ga0193745_10686742 | 3300020059 | Soil | MNHRKSPNQALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPGTARAFALHRRAHTRAPGPESLS |
Ga0193745_10740481 | 3300020059 | Soil | DNSLSHTTSSVLHLLCEFAGPNQALQRTPGFGVQLPSAALIRPAQSRAVLPAMKPGTARAFASRRRAHTRAPGPESLSLGSLGVATRFLITTL |
Ga0210382_105101971 | 3300021080 | Groundwater Sediment | TTTPNHALQRTPGFGVQLPSAALIRPAQSRAVLPAMKPGTARAFALPRRAHSRAPGPESLSLGSLGVFTRLSR |
Ga0179596_100163983 | 3300021086 | Vadose Zone Soil | MTPNHALQRTPGFGVQLPSAALVRPAQSRAVRHAIKPGTARAFASRRRAHTRAPGPESLSLGSLGEDTI |
Ga0179596_100163986 | 3300021086 | Vadose Zone Soil | MRPETPNHALQRTPGFGVQLPGAALNRPAQSRAVLPAMKPGTARAFALRRCAHSRAPGPESLSLGIS |
Ga0179596_100253871 | 3300021086 | Vadose Zone Soil | PVSPETPNHALQRTPGFGVQLPGAALIRPAQSRAVLPAMKPSTARAFALRRRAHSRAPGPESLSLGSLGD |
Ga0179596_100253873 | 3300021086 | Vadose Zone Soil | MNPNRPSPNHALQRTPGFGVQLPSAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRVPGPESLSFGSLGVATSLP |
Ga0179596_100269722 | 3300021086 | Vadose Zone Soil | MTATPNHALQRTPGFGVQLPSAAVIRPAQSRAVRPAMKPGTARTFALRRRAHSRAPGPESLSLGSLGV |
Ga0179596_100285743 | 3300021086 | Vadose Zone Soil | MNTATPNQALQRTPGFGVQLPSAALVRPAQSRAVRPAMKPAYSDVAATRLYAGTARAFVLRRRAHIRAPGPESLSLGSLGHSHNRSL |
Ga0179596_100285746 | 3300021086 | Vadose Zone Soil | RTPGIGVQLPSAALIRPAQSRAVRPAMKPGTARAFALRRRAHTRAPGPESLSLGSLGDLQAEI |
Ga0179596_101630901 | 3300021086 | Vadose Zone Soil | VNNTTPATPNHALQRTPGFGVQLPGAALIRPAQSRAVRPAMKPGTARAFALRRRAHTPRPRPGVAELGVVRPLAPIFP |
Ga0179596_101748722 | 3300021086 | Vadose Zone Soil | MNDFFPTPATPNHALQRTPGFGVQLPGAAVVRPAQSRAVLPAMKPGTARAFASRRRAHTRAPGPESLSLGSLGD |
Ga0179596_102191081 | 3300021086 | Vadose Zone Soil | MNSTSHPDETPNHALQRTPGFGVQLPGAAVVRPAQSRAVLPAMKPGTARAFASRRRAHTRAPGPESLSLGSLAVASRSV |
Ga0179596_102675972 | 3300021086 | Vadose Zone Soil | ETPNHALQRTPGFGVQLPGAAFVRPAQSRAVLPAMKPGTARAFALRRRAQSRAPGPESLSLGSLGDYAHP |
Ga0179596_103270172 | 3300021086 | Vadose Zone Soil | MTPNHALQRTPGFGVQLPGAGSNPTGTARAFALRRRAHIRVLGPESLSLGSLGVATRLL |
Ga0179596_104120451 | 3300021086 | Vadose Zone Soil | PRPNQALQRTPGFGVQLPSAALIRPAQSRAVRPAMKPRPHRYAKHCGRAGTARAFASRRRAHTRAPGPESLSLGSLGVATHTPE |
Ga0210389_110889141 | 3300021404 | Soil | MRPETPNHELQRTPGFGVQLPGAALIRPAQSRAALPAMKPGTARAFASRRRAHSRAPGPE |
Ga0224495_102593031 | 3300022208 | Sediment | AMEPSTPNHALQRTPGFGVQLPSAALIRPAQSRAVLPAMKPGTARAFASRRRAHTRAPGPESLSLGSLGVFTHSEK |
Ga0209179_10184233 | 3300027512 | Vadose Zone Soil | MNSESDESPNHALQRTPGFGVQLPSAAVVRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSLGDTTRLSRERKP |
Ga0209179_11104151 | 3300027512 | Vadose Zone Soil | MTPALNSTATPNHALQRTPGFGVQLPSAAVVRPAQSRAVLPATKPSTARAFALRRRAHSRAPGPESLSLGSLGV |
Ga0315906_101840683 | 3300032050 | Freshwater | VLGQGVGRHDLKGNNHALQRTPGFGVQFPGAALIRPAQSRAVRPAMKPGTARAFASRRHAHSRAPGPESLSLGSRLATRSL |
Ga0335027_0302089_353_562 | 3300034101 | Freshwater | MNETPNHALQRTPGFGVQLPSAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSSGRC |
Ga0335030_0189051_1141_1362 | 3300034103 | Freshwater | MNETPNHALQRTPGFGVQLPSAALIRPAQSRAVRPAMKPGTARAFALRRRAHSRAPGPESLSLGSFGDAALVP |
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