Metagenome / Metatranscriptome Family F096110

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096110
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	95 residues
Representative Sequence	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Number of Associated Samples	101
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.48 %
% of genes near scaffold ends (potentially truncated)	39.05 %
% of genes from short scaffolds (< 2000 bps)	83.81 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.048 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.476 % of family members)
Environment Ontology (ENVO)	Unclassified (31.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 79.17% β-sheet: 0.00% Coil/Unstructured: 20.83%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF08924	DUF1906	1.90
PF08863	YolD	0.95
PF12849	PBP_like_2	0.95
PF01361	Tautomerase	0.95
PF00528	BPD_transp_1	0.95
PF03734	YkuD	0.95
PF04519	Bactofilin	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.95
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.95
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.05 %
Viruses	superkingdom	All Organisms → Viruses	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	95.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	94.29 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	93.33 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	90.48 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.90 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	90.48 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1.90 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	90.48 %
Roseburia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1.90 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	90.48 %
Roseburia intestinalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1.90 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17086758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2290	Open in IMG/M
2228664021\|ICCgaii200_c1011488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	560	Open in IMG/M
2228664021\|ICCgaii200_c1012274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	536	Open in IMG/M
2228664022\|INPgaii200_c1170858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1293	Open in IMG/M
3300000550\|F24TB_11293248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1960	Open in IMG/M
3300000559\|F14TC_108853772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	846	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1042021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	662	Open in IMG/M
3300000787\|JGI11643J11755_11782022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	936	Open in IMG/M
3300000787\|JGI11643J11755_11804740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	894	Open in IMG/M
3300000890\|JGI11643J12802_10742882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	863	Open in IMG/M
3300000955\|JGI1027J12803_100753739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	630	Open in IMG/M
3300000956\|JGI10216J12902_108023233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	716	Open in IMG/M
3300002067\|JGI24735J21928_10228047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	542	Open in IMG/M
3300002075\|JGI24738J21930_10162997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	500	Open in IMG/M
3300004479\|Ga0062595_101478670	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300004801\|Ga0058860_12158847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1486	Open in IMG/M
3300005290\|Ga0065712_10195930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1128	Open in IMG/M
3300005294\|Ga0065705_10173208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1637	Open in IMG/M
3300005328\|Ga0070676_10010108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5112	Open in IMG/M
3300005329\|Ga0070683_100513108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1145	Open in IMG/M
3300005331\|Ga0070670_100140232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2090	Open in IMG/M
3300005336\|Ga0070680_100052280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3335	Open in IMG/M
3300005338\|Ga0068868_100276254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1421	Open in IMG/M
3300005341\|Ga0070691_10274362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	912	Open in IMG/M
3300005435\|Ga0070714_100615771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1043	Open in IMG/M
3300005436\|Ga0070713_101655649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	621	Open in IMG/M
3300005438\|Ga0070701_10028845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2730	Open in IMG/M
3300005440\|Ga0070705_100049786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2434	Open in IMG/M
3300005548\|Ga0070665_102601754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	507	Open in IMG/M
3300005983\|Ga0081540_1123565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1069	Open in IMG/M
3300006049\|Ga0075417_10361621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	712	Open in IMG/M
3300006058\|Ga0075432_10183748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300006163\|Ga0070715_10510983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	689	Open in IMG/M
3300006175\|Ga0070712_100779315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	819	Open in IMG/M
3300006196\|Ga0075422_10020855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2227	Open in IMG/M
3300006755\|Ga0079222_10065870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1759	Open in IMG/M
3300006792\|Ga0075530_1058806	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300006844\|Ga0075428_101043584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	864	Open in IMG/M
3300006846\|Ga0075430_100388849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1151	Open in IMG/M
3300006853\|Ga0075420_100184794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1823	Open in IMG/M
3300007076\|Ga0075435_100576188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	975	Open in IMG/M
3300009053\|Ga0105095_10297439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	887	Open in IMG/M
3300009094\|Ga0111539_13010837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	544	Open in IMG/M
3300009146\|Ga0105091_10066258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1621	Open in IMG/M
3300009147\|Ga0114129_12471820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	621	Open in IMG/M
3300009156\|Ga0111538_11431171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	872	Open in IMG/M
3300010375\|Ga0105239_10513722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1362	Open in IMG/M
3300010396\|Ga0134126_13112757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	500	Open in IMG/M
3300010397\|Ga0134124_10669127	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
3300010399\|Ga0134127_12078590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	646	Open in IMG/M
3300012354\|Ga0137366_10376490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1036	Open in IMG/M
3300012362\|Ga0137361_10764576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	880	Open in IMG/M
3300012883\|Ga0157281_1101259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	524	Open in IMG/M
3300012908\|Ga0157286_10016071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1559	Open in IMG/M
3300012910\|Ga0157308_10134462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	771	Open in IMG/M
3300012951\|Ga0164300_10851493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	571	Open in IMG/M
3300012984\|Ga0164309_11020446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	683	Open in IMG/M
3300013096\|Ga0157307_1059933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	732	Open in IMG/M
3300013105\|Ga0157369_10064583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3942	Open in IMG/M
3300013296\|Ga0157374_10832229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	939	Open in IMG/M
3300014968\|Ga0157379_10311335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1436	Open in IMG/M
3300015371\|Ga0132258_11316287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1826	Open in IMG/M
3300015371\|Ga0132258_12768146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1222	Open in IMG/M
3300015374\|Ga0132255_100699257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1505	Open in IMG/M
3300017792\|Ga0163161_10084845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2336	Open in IMG/M
3300019356\|Ga0173481_10372776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	689	Open in IMG/M
3300019361\|Ga0173482_10018731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1933	Open in IMG/M
3300019362\|Ga0173479_10075416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1183	Open in IMG/M
3300023057\|Ga0247797_1045524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	622	Open in IMG/M
3300025898\|Ga0207692_10041298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2283	Open in IMG/M
3300025903\|Ga0207680_11261015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	526	Open in IMG/M
3300025909\|Ga0207705_10966175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	659	Open in IMG/M
3300025915\|Ga0207693_10091704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2382	Open in IMG/M
3300025917\|Ga0207660_10154453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1766	Open in IMG/M
3300025918\|Ga0207662_10012552	All Organisms → cellular organisms → Bacteria → Proteobacteria	4721	Open in IMG/M
3300025919\|Ga0207657_10008691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10281	Open in IMG/M
3300025919\|Ga0207657_11113767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	603	Open in IMG/M
3300025923\|Ga0207681_10235309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1423	Open in IMG/M
3300025935\|Ga0207709_11718801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	522	Open in IMG/M
3300025936\|Ga0207670_10812909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	779	Open in IMG/M
3300025949\|Ga0207667_10113741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2790	Open in IMG/M
3300026041\|Ga0207639_10078342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2608	Open in IMG/M
3300026116\|Ga0207674_11360384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	679	Open in IMG/M
3300026944\|Ga0207570_1012907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	625	Open in IMG/M
3300027675\|Ga0209077_1199695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	558	Open in IMG/M
3300027713\|Ga0209286_1116985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	988	Open in IMG/M
3300027811\|Ga0256868_10264727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	717	Open in IMG/M
3300028381\|Ga0268264_10400122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1319	Open in IMG/M
3300031229\|Ga0299913_11158128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	734	Open in IMG/M
3300031280\|Ga0307428_1149011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	588	Open in IMG/M
3300031368\|Ga0307429_1095037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	848	Open in IMG/M
3300031573\|Ga0310915_10143218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1649	Open in IMG/M
3300031716\|Ga0310813_12085178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	536	Open in IMG/M
3300031798\|Ga0318523_10221430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	946	Open in IMG/M
3300031820\|Ga0307473_11526984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	507	Open in IMG/M
3300031879\|Ga0306919_10055959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2633	Open in IMG/M
3300031890\|Ga0306925_10020296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	6619	Open in IMG/M
3300031894\|Ga0318522_10225849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	710	Open in IMG/M
3300031940\|Ga0310901_10180739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	829	Open in IMG/M
3300031947\|Ga0310909_10404540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1146	Open in IMG/M
3300032012\|Ga0310902_10658899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	701	Open in IMG/M
3300032094\|Ga0318540_10489100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	594	Open in IMG/M
3300032211\|Ga0310896_10625935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	603	Open in IMG/M
3300033290\|Ga0318519_10436341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	783	Open in IMG/M
3300033417\|Ga0214471_11434126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	519	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.76%
Host-Associated	Host-Associated	35.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.05%
Plants	Host-Associated → Plants	34.29%
Aquatic	Environmental → Aquatic	5.71%
Human	Host-Associated → Human	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.38%
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Marine	Environmental → Aquatic → Marine	1.90%
Digestive System	Host-Associated → Human → Digestive System	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.81%
Loam	Environmental → Terrestrial → Soil → Loam	15.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.62%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.90%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.90%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.95%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.95%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026944	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12 (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027811	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01161150	2088090014	Soil	MTLPDSDWTPEQAEGLLDSLKLNRGQPDWRPEALKRLHDWCSTHYEDASTVEGQLEFIAYELLHSFRSVGIFLKRAKTVEEARQAVQLYVRRLAL
ICCgaii200_10114881	2228664021	Soil	GWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE
ICCgaii200_10122741	2228664021	Soil	LGREMTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE
INPgaii200_11708582	2228664022	Soil	MGRLNHGQVPYEFERGERKREMTLPDSDWTPEQAEGLLDSLKLNRGQPDWRPEALKRLHDWCSTHYEDASTVEGQLEFIAYELLHSFRSVGIFLKRAKTVEEARQAVQLYVRRLAL
F24TB_112932482	3300000550	Soil	MTLLDTGWTEEQAQGLVDSLKLGGGEPAWRPEHLQRLHDWCSVHNKEWTTVEAQLDFIAYELLNSFQAVGLFLKRAKTVEQAREAVQPFVRRLASQ*
F14TC_1088537723	3300000559	Soil	TLLDTGWTEEQAQGLVDSLKLGGGEPAWRPEHLQRLHDWCSVHNKEWTTVEAQLDFIAYELLNSFQAVGLFLKRAKTXXKAREAVQPFVRRLASQ*
AP72_2010_repI_A01DRAFT_10420212	3300000579	Forest Soil	MSSSGESVGREMTLLDGDWTPQQAQGLLDSLKINCGVPDWKPEALKRLCDWCSSHQEDATTVEGQLEFIAYELLHSFKALGILLKRAETVEEAKQAVQPYVRRLVSER*
JGI11643J11755_117820222	3300000787	Soil	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGIFLKRAQTVEEAKEAVRPYVRRLAQ*
JGI11643J11755_118047402	3300000787	Soil	MTLLDTGWTEEQAQGLVDSLKLGGGEPAWRPEHLQRLHDWCSVHNKEWATVEAQLDFIAYELLNSFQAVGLFLKRAKTVEQAREAVQPFVRRLASQ*
JGI11643J12802_107428822	3300000890	Soil	QIRQHYPPLKIHQMGRLNHGQVPYEFERGERKREMTLPDSDWTPEQAEGLLDSLKLNRGQPDWRPEALKRLHDWCSTHYEDASTVEGQLEFIAYELLHSFRSVGIFLKRAKTVEEARQAVQLYVRRLAL*
JGI1027J12803_1007537392	3300000955	Soil	PYEFERGERKREMTLPDSDWTPEQAEGLLDSLKLNRGQPDWRPEALKRLHDWCSTHYEDASTVEGQLEFIAYELLHSFRSVGIFLKRAKTVEEARQAVQLYVRRLAL*
JGI10216J12902_1080232331	3300000956	Soil	MTLLDTGWTEEQARGLLDSLKLKSGLPEWKPEHLQRLRDWCSTHKKDASLTEAQLEFVADELLHSFQAVGIFLKRAQTVEEAKEAVRPYVKRLAQ*
JGI24735J21928_102280471	3300002067	Corn Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQXVGMFLKRAHTVEEAKEAVRPYVRRLAXE*
JGI24738J21930_101629972	3300002075	Corn Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPXWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0062595_1014786702	3300004479	Soil	EFERGERKREMTLPDSDWTPEQAEGLLDSLKLNRGQPDWRPEALKRLHDWCSTHYEDASTVEGQLEFIAYELLHSFRSVGIFLKRAKTVEEARQAVQLYVRRLAL*
Ga0058860_121588472	3300004801	Host-Associated	EMTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0065712_101959301	3300005290	Miscanthus Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE*
Ga0065705_101732081	3300005294	Switchgrass Rhizosphere	MSPPQQIRQHYPPLKIHQMGRLNHGQVPYEFERGERKREMTLPDSDWTPEQAEGLLDSLKLNRGQPDWRPEALKRLHDWCSTHYEDASTVEGQLEFIAYELLHSFRSVGIFLKRAKTVEEARQAVQLYVRRLAL*
Ga0070676_100101084	3300005328	Miscanthus Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE*
Ga0070683_1005131082	3300005329	Corn Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0070670_1001402324	3300005331	Switchgrass Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPD*
Ga0070680_1000522801	3300005336	Corn Rhizosphere	MTLLDTGWTQEQAQELLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLASE*
Ga0068868_1002762543	3300005338	Miscanthus Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLASE*
Ga0070691_102743622	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGMFLKRAHTVEEAKEAVRPYVKRLAQ*
Ga0070714_1006157712	3300005435	Agricultural Soil	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRSYVRRLAPE*
Ga0070713_1016556491	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSSSGESVGREMTLLDGDWTPQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKQAVQPYVRRLVSER*
Ga0070701_100288452	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0070705_1000497861	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0070665_1026017541	3300005548	Switchgrass Rhizosphere	EEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE*
Ga0081540_11235652	3300005983	Tabebuia Heterophylla Rhizosphere	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGIFLKRAQTVEEAKEAVRPYVRRLAQ*
Ga0075417_103616212	3300006049	Populus Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTV
Ga0075432_101837481	3300006058	Populus Rhizosphere	SLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0070715_105109831	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLA
Ga0070712_1007793151	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSSSGESVGREMTLLDGDWTPQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYQLLHSFKAVGLLKRAETVEEAKHAVQPYVRRLVSVR*
Ga0075422_100208555	3300006196	Populus Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGMFLKRAHTVEEAKEAVRP
Ga0079222_100658703	3300006755	Agricultural Soil	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0075530_10588063	3300006792	Arctic Peat Soil	MTLLDNGWTEEQAQGLLDSLKLNGGTPHWKPEHLQKLQDWCSAYDQDSTTVEAQLEFIAHELLNSFRGIGLFLKRAKTVEQARGAVQPYVRRLGL*
Ga0075428_1010435842	3300006844	Populus Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0075430_1003888492	3300006846	Populus Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDPSTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0075420_1001847942	3300006853	Populus Rhizosphere	NCGDFLEMTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0075435_1005761881	3300007076	Populus Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPD*
Ga0105095_102974392	3300009053	Freshwater Sediment	MTFLDNGWTEEQAQGLLDKLKLTGGTPNWKPEHIQKLRDWCRALDKDDTAIDSQLEFVACELLNNYHDVGLALRKAKTVEEAREAVDPYVRQLMPETQEATLVEFPKTNSSR*
Ga0111539_130108371	3300009094	Populus Rhizosphere	TQEQAQGLLDSLKLNGGMHEWKPEHLQRLRDRSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPD*
Ga0105091_100662582	3300009146	Freshwater Sediment	MTLLDTGWTQEQAQGLLDCLQLKGGTPHWKSEHLQRLNDWCSAHHKDSTATEAQLEFIAHELLHSFQSVAMFLKRANTVEESREAVGAYVTRLALHG*
Ga0114129_124718202	3300009147	Populus Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGIPEWKTEHLQRLRDWSRTRQKDASTIEAQLEFIADELLHSFQAVGMFLMRAH
Ga0111538_114311712	3300009156	Populus Rhizosphere	AQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPD*
Ga0105239_105137222	3300010375	Corn Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTTEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE*
Ga0134126_131127571	3300010396	Terrestrial Soil	TGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGMFLKRAHTVEEAKEAVRPYVRRLALD*
Ga0134124_106691272	3300010397	Terrestrial Soil	MTLLDRDWTPQQAQGLLDSLKLSYGMPDWRPEALKRFHDWCSTYQEDAGTSQGKLEFIAHELLHSFKAVGILLKRAETVEEARQAVQPYVRRLVRGH*
Ga0134127_120785901	3300010399	Terrestrial Soil	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLARE*
Ga0137366_103764901	3300012354	Vadose Zone Soil	MSSNGESVGREMTLLDSDWTPEQAQGLLDSLKLNCGMPDWRPEALKRLHDWCSTHHEDATKVEGQLEFIAYELLYSFKSVGIFLKRAQTVEEARQAVQLYVRRLVL*
Ga0137361_107645761	3300012362	Vadose Zone Soil	MTILDNGWTEEQARGLLDSLMLNGSIPNWKPEHLQRLHDWCSAHEKDSTTIDGQLEFIAYELLNSFQAVGMFLKRAKT
Ga0157281_11012591	3300012883	Soil	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRSYVRRLAPD*
Ga0157286_100160712	3300012908	Soil	FPHVQLRGLREMTLLDTGWTEEQARGLLDSLKLNGGMPEWKPAHLQRLRDWSSIRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0157308_101344621	3300012910	Soil	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0164300_108514931	3300012951	Soil	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKE
Ga0164309_110204461	3300012984	Soil	YSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE*
Ga0157307_10599331	3300013096	Soil	MTLLDTGWTQEQAQGLLDSLKLNGGMPKWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0157369_100645832	3300013105	Corn Rhizosphere	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE*
Ga0157374_108322291	3300013296	Miscanthus Rhizosphere	TQEQAQGLLDSLKLNGGMPKWKPEHLQGLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPD*
Ga0157379_103113353	3300014968	Switchgrass Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHT
Ga0132258_113162871	3300015371	Arabidopsis Rhizosphere	MSSSGESVGREMTLLDGDWTPQQAQGLLDSLKINCGVPDWKPEALKRLCDWCSFHQEDATTVEGQLEFIAYELLHSFKALGILLKRAETVEEAKQAVQPYVRRLVSER*
Ga0132258_127681463	3300015371	Arabidopsis Rhizosphere	LLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVKEAKEAVWPYVRRLAPE*
Ga0132255_1006992573	3300015374	Arabidopsis Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVKEAKEAVWPYVRRLAPE*
Ga0163161_100848452	3300017792	Switchgrass Rhizosphere	MTLLDTGWTEEQAQGLLDSLKLNGGMPKWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0173481_103727762	3300019356	Soil	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGVFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0173482_100187314	3300019361	Soil	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0173479_100754162	3300019362	Soil	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVKRLAQ
Ga0247797_10455241	3300023057	Soil	MTLLDTGWTQEQAQGLLDSLKLNGGMPKWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRP
Ga0207692_100412985	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLDTGWTEEQAQALLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0207680_112610151	3300025903	Switchgrass Rhizosphere	LLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0207705_109661751	3300025909	Corn Rhizosphere	HAPLDSLKLNGGMPKWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0207693_100917043	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSSSGESVGREMTLLDGDWTPQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYQLLHSFKAVGLLKRAETVEEAKHAVQPYVRRLVSER
Ga0207660_101544532	3300025917	Corn Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPKWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0207662_100125523	3300025918	Switchgrass Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0207657_1000869111	3300025919	Corn Rhizosphere	LTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0207657_111137671	3300025919	Corn Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPKWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGMFLKRAHTVEEA
Ga0207681_102353091	3300025923	Switchgrass Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVKRLAQ
Ga0207709_117188011	3300025935	Miscanthus Rhizosphere	TQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0207670_108129091	3300025936	Switchgrass Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0207667_101137412	3300025949	Corn Rhizosphere	MTLLDTGWTQEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0207639_100783422	3300026041	Corn Rhizosphere	MTLLDTGWTEEQAQGLLDSLKLNGGMPKWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0207674_113603841	3300026116	Corn Rhizosphere	WTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0207570_10129071	3300026944	Soil	QAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0209077_11996952	3300027675	Freshwater Sediment	MTLLDTGWTQEQAQGLLDCLQLKGGTPHWKSEHLQRLNDWCSAHHKDSTATEAQLEFIAHELLHSFQSVAMFLKRANTVEESREAVGAYVTRLALHG
Ga0209286_11169853	3300027713	Freshwater Sediment	MTFLDNGWTEEQAQGLLDKLKLTGGTPNWKPEHIQKLRDWCRALDKDDTAIDSQLEFVACELLNNYHDVGLALRKAKTVEEAREAVDPYVRQLMPETQEATLVEFPKTNSSR
Ga0256868_102647271	3300027811	Soil	MTILDNGWTEEQARGLLDSLMLNGSIPNWKPEHLQRLHDWCSAHEKDSTTIDGQLEFIAYELLNSFQAVGMFLKRAKTVEE
Ga0268264_104001221	3300028381	Switchgrass Rhizosphere	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLAE
Ga0299913_111581282	3300031229	Soil	MTLLDQDWTEEQAQGLLDSLGLDGATPKWKLEHLRRLRDWCSAHSMDAATIDGQLEFIAYELCNSFQAVGMALKRAKTVEEARG
Ga0307428_11490111	3300031280	Salt Marsh	MTLLDNGWTEEQAQGLLDSLKLNGGTPHWKPEHLQRLQDWCSAYDRDSTTVEAQLEFVADELLNSFQAIGLFLKRAKTVEQARGAVRPYVRRLALQ
Ga0307429_10950372	3300031368	Salt Marsh	MTVLDNGWTEEQAQGLLDSLKLNGGTPHWKPEHLQRLQDWCSAYDKDSTTVEAQLEFVADELLNSFQAIGLFLKRAKTVEQARGAVRPYVRRLALQ
Ga0310915_101432182	3300031573	Soil	MTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKHAVQPYVRRLVSER
Ga0310813_120851782	3300031716	Soil	DSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGVFLKRAHTVEEAKEAVRPYVRRLAPE
Ga0318523_102214301	3300031798	Soil	MTSSGESVGREMTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKHAVQPYVRRLVRER
Ga0307473_115269841	3300031820	Hardwood Forest Soil	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQTVGMFLKRAHTVEEAKEAVRPYVRRLASE
Ga0306919_100559591	3300031879	Soil	MTSSGESVGREMTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKHAVQPYVRRLVSER
Ga0306925_100202966	3300031890	Soil	MTSSGESVGREMTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKQAVQPYVRRLVSER
Ga0318522_102258491	3300031894	Soil	MTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKHAVQPY
Ga0310901_101807392	3300031940	Soil	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRRLAPD
Ga0310909_104045402	3300031947	Soil	MSSSGESVGREMTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKHAVQPYVRRLVSER
Ga0310902_106588991	3300032012	Soil	MTLLDTGWTEEQAQGLLDSLKLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQAVGMFLKRAHTVEEAKEAVRPYVRRLA
Ga0318540_104891002	3300032094	Soil	MSSSGESVGREMTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKQAVQPYVRRLVSER
Ga0310896_106259351	3300032211	Soil	MTLLDTGWTQEQAQGLLDSLTLNGGMPEWKPEHLQRLRDWSSTRQKDASTIEAQLEFIADELLHSFQVVGMFLKRAHTVEEAKEAVRPYVRR
Ga0318519_104363412	3300033290	Soil	MSSSGESVGREMTLLDGDWTSQQAQGLLDSLKINCGVPDWKPEALKRLCEWCSSHQEDATTVQGQLEFIAYELLHSFKAVGILLKRAETVEEAKQAVQPY
Ga0214471_114341261	3300033417	Soil	MTLLDQDWTEEQAQGLLDSLNLDGGTPKWKPEHLRRLRDWCSAHGKDSAAIDGQLEFIAYELCNGFQAVGRALKRAKTVPSENSIRRRFAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096110

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences