NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096044

Metagenome / Metatranscriptome Family F096044

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096044
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 40 residues
Representative Sequence QQREAGTELKESFKNVTQMGHNGTWTFKFSSPFYMWLLENLY
Number of Associated Samples 97
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.10 %
% of genes from short scaffolds (< 2000 bps) 91.43 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (83.810 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(22.857 % of family members)
Environment Ontology (ENVO) Unclassified
(70.476 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(81.905 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.57%    β-sheet: 0.00%    Coil/Unstructured: 81.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.20
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF01467CTP_transf_like 24.76
PF06941NT5C 8.57
PF00080Sod_Cu 1.90
PF03358FMN_red 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG45025'(3')-deoxyribonucleotidaseNucleotide transport and metabolism [F] 8.57
COG2032Cu/Zn superoxide dismutaseInorganic ion transport and metabolism [P] 1.90


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A83.81 %
All OrganismsrootAll Organisms16.19 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000173|LPfeb10P16500mDRAFT_c1020435Not Available594Open in IMG/M
3300001344|JGI20152J14361_10115046Not Available516Open in IMG/M
3300001355|JGI20158J14315_10234660Not Available507Open in IMG/M
3300001450|JGI24006J15134_10011868All Organisms → cellular organisms → Bacteria4248Open in IMG/M
3300001450|JGI24006J15134_10081524Not Available1209Open in IMG/M
3300001460|JGI24003J15210_10038229Not Available1689Open in IMG/M
3300001460|JGI24003J15210_10082286Not Available970Open in IMG/M
3300001460|JGI24003J15210_10157852Not Available572Open in IMG/M
3300001935|GOS2223_1021338Not Available1371Open in IMG/M
3300001969|GOS2233_1109959Not Available1824Open in IMG/M
3300002484|JGI25129J35166_1071397Not Available636Open in IMG/M
3300005057|Ga0068511_1100136All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300005520|Ga0066864_10016881Not Available2309Open in IMG/M
3300006165|Ga0075443_10173983Not Available765Open in IMG/M
3300006310|Ga0068471_1387454Not Available919Open in IMG/M
3300006338|Ga0068482_1558697Not Available781Open in IMG/M
3300006637|Ga0075461_10155544All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300006751|Ga0098040_1074834Not Available1034Open in IMG/M
3300006916|Ga0070750_10083891Not Available1492Open in IMG/M
3300006916|Ga0070750_10335129Not Available641Open in IMG/M
3300007234|Ga0075460_10185107Not Available714Open in IMG/M
3300009001|Ga0102963_1357406Not Available573Open in IMG/M
3300009152|Ga0114980_10216555Not Available1124Open in IMG/M
3300009152|Ga0114980_10350186Not Available852Open in IMG/M
3300009183|Ga0114974_10280116Not Available987Open in IMG/M
3300009423|Ga0115548_1030705All Organisms → Viruses → Predicted Viral2059Open in IMG/M
3300009512|Ga0115003_10916591Not Available509Open in IMG/M
3300009706|Ga0115002_11061191Not Available553Open in IMG/M
3300009785|Ga0115001_10131237Not Available1637Open in IMG/M
3300009911|Ga0132221_1009228All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300010354|Ga0129333_10863461Not Available768Open in IMG/M
3300010883|Ga0133547_11409751All Organisms → cellular organisms → Bacteria1314Open in IMG/M
3300012928|Ga0163110_10358789Not Available1082Open in IMG/M
3300012936|Ga0163109_10985129Not Available616Open in IMG/M
3300012952|Ga0163180_11722809Not Available531Open in IMG/M
3300016771|Ga0182082_1450122Not Available527Open in IMG/M
3300017718|Ga0181375_1048896Not Available703Open in IMG/M
3300017723|Ga0181362_1098002All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300017725|Ga0181398_1090130Not Available732Open in IMG/M
3300017731|Ga0181416_1020914Not Available1537Open in IMG/M
3300017738|Ga0181428_1056375Not Available916Open in IMG/M
3300017749|Ga0181392_1092675Not Available906Open in IMG/M
3300017751|Ga0187219_1204932Not Available544Open in IMG/M
3300017759|Ga0181414_1207495Not Available506Open in IMG/M
3300017771|Ga0181425_1208441Not Available612Open in IMG/M
3300017773|Ga0181386_1123679Not Available799Open in IMG/M
3300017779|Ga0181395_1108827Not Available886Open in IMG/M
3300017818|Ga0181565_10381479Not Available933Open in IMG/M
3300017824|Ga0181552_10473519Not Available592Open in IMG/M
3300017956|Ga0181580_10812955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria588Open in IMG/M
3300017956|Ga0181580_11004329Not Available516Open in IMG/M
3300017962|Ga0181581_10562794Not Available698Open in IMG/M
3300017985|Ga0181576_10166302Not Available1457Open in IMG/M
3300018413|Ga0181560_10328570Not Available711Open in IMG/M
3300018413|Ga0181560_10476405Not Available569Open in IMG/M
3300018426|Ga0181566_10377272Not Available1012Open in IMG/M
3300020185|Ga0206131_10351464Not Available635Open in IMG/M
3300020222|Ga0194125_10646892All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300020343|Ga0211626_1151572Not Available518Open in IMG/M
3300020363|Ga0211493_1183146Not Available549Open in IMG/M
3300020367|Ga0211703_10196078Not Available529Open in IMG/M
3300020397|Ga0211583_10116598Not Available996Open in IMG/M
3300020416|Ga0211644_10013089All Organisms → Viruses → Predicted Viral3433Open in IMG/M
3300020422|Ga0211702_10180894Not Available632Open in IMG/M
3300020428|Ga0211521_10324312Not Available681Open in IMG/M
3300020436|Ga0211708_10053748Not Available1552Open in IMG/M
3300020441|Ga0211695_10326177Not Available569Open in IMG/M
3300020467|Ga0211713_10193079Not Available980Open in IMG/M
3300021364|Ga0213859_10402887Not Available606Open in IMG/M
3300021365|Ga0206123_10461640Not Available513Open in IMG/M
3300021959|Ga0222716_10223736Not Available1177Open in IMG/M
3300021963|Ga0222712_10349806Not Available912Open in IMG/M
3300022183|Ga0196891_1089324Not Available544Open in IMG/M
3300022198|Ga0196905_1138932All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45630Open in IMG/M
3300022867|Ga0222629_1073915Not Available516Open in IMG/M
3300022928|Ga0255758_10348209Not Available609Open in IMG/M
3300022937|Ga0255770_10455061Not Available540Open in IMG/M
3300023105|Ga0255782_10438071All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.575Open in IMG/M
3300024297|Ga0228658_1014727Not Available2040Open in IMG/M
3300025120|Ga0209535_1009338Not Available5644Open in IMG/M
3300025120|Ga0209535_1204303Not Available551Open in IMG/M
3300025543|Ga0208303_1059338Not Available902Open in IMG/M
3300025610|Ga0208149_1058410Not Available983Open in IMG/M
3300025632|Ga0209194_1125718Not Available625Open in IMG/M
3300025704|Ga0209602_1006253All Organisms → cellular organisms → Bacteria8062Open in IMG/M
3300025809|Ga0209199_1123129Not Available1018Open in IMG/M
3300025876|Ga0209223_10090298Not Available1707Open in IMG/M
3300025889|Ga0208644_1098712Not Available1444Open in IMG/M
3300026136|Ga0208763_1018998Not Available1063Open in IMG/M
3300026204|Ga0208521_1047963All Organisms → cellular organisms → Bacteria1254Open in IMG/M
(restricted) 3300027728|Ga0247836_1067310Not Available1918Open in IMG/M
3300027771|Ga0209279_10115985Not Available770Open in IMG/M
3300027782|Ga0209500_10232244Not Available815Open in IMG/M
3300027788|Ga0209711_10159137Not Available1076Open in IMG/M
3300027838|Ga0209089_10579338Not Available594Open in IMG/M
3300028192|Ga0257107_1050076All Organisms → cellular organisms → Bacteria1290Open in IMG/M
3300031597|Ga0302116_1178513Not Available642Open in IMG/M
3300031605|Ga0302132_10132548All Organisms → cellular organisms → Bacteria1239Open in IMG/M
3300031621|Ga0302114_10182431Not Available896Open in IMG/M
3300031676|Ga0302136_1072852Not Available1152Open in IMG/M
3300031774|Ga0315331_10283164Not Available1224Open in IMG/M
3300032011|Ga0315316_11610876Not Available507Open in IMG/M
3300032277|Ga0316202_10038367All Organisms → cellular organisms → Bacteria2275Open in IMG/M
3300032360|Ga0315334_11927865Not Available500Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine22.86%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh12.38%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine11.43%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous8.57%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.57%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake3.81%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.81%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine2.86%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.86%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.86%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake1.90%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.90%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.90%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.90%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.95%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.95%
Meromictic PondEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond0.95%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.95%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water0.95%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.95%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.95%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.95%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.95%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000173Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500mEnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001355Pelagic Microbial community sample from North Sea - COGITO 998_met_08EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001935Marine microbial communities from Northern Gulf of Maine, Canada - GS007EnvironmentalOpen in IMG/M
3300001969Marine microbial communities from Yucatan Channel, Mexico - GS017EnvironmentalOpen in IMG/M
3300002484Marine viral communities from the Pacific Ocean - ETNP_2_130EnvironmentalOpen in IMG/M
3300005057Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2umEnvironmentalOpen in IMG/M
3300005520Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251EnvironmentalOpen in IMG/M
3300006165Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNAEnvironmentalOpen in IMG/M
3300006310Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500mEnvironmentalOpen in IMG/M
3300006338Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770mEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300009911Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, surface; RNA IDBA-UDEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300016771Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017718Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaGEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017962Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018413Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018426Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020222Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250mEnvironmentalOpen in IMG/M
3300020343Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555975-ERR599174)EnvironmentalOpen in IMG/M
3300020363Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX555958-ERR599173)EnvironmentalOpen in IMG/M
3300020367Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)EnvironmentalOpen in IMG/M
3300020397Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020422Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)EnvironmentalOpen in IMG/M
3300020428Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020441Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)EnvironmentalOpen in IMG/M
3300020467Marine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022867Saline water microbial communities from Ace Lake, Antarctica - #1EnvironmentalOpen in IMG/M
3300022928Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaGEnvironmentalOpen in IMG/M
3300022937Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaGEnvironmentalOpen in IMG/M
3300023105Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaGEnvironmentalOpen in IMG/M
3300024297Seawater microbial communities from Monterey Bay, California, United States - 71DEnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026136Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)EnvironmentalOpen in IMG/M
3300026204Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47 (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027771Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300031597Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCMEnvironmentalOpen in IMG/M
3300031605Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1EnvironmentalOpen in IMG/M
3300031621Marine microbial communities from Western Arctic Ocean, Canada - AG5_SurfaceEnvironmentalOpen in IMG/M
3300031676Marine microbial communities from Western Arctic Ocean, Canada - CBN3_20mEnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPfeb10P16500mDRAFT_102043523300000173MarineLPETLKNVTQMGHNGTWTFTFDSPFYMWLLENLY*
JGI20152J14361_1011504623300001344Pelagic MarinePWAARQRESGAELPEFFKNVTQLGHEGEWKFTFASPFYMWLLENLY*
JGI20158J14315_1023466023300001355Pelagic MarineRESGVELPESFKNVTKMGHDGEWIFTFASPFYMWLLENLY*
JGI24006J15134_1001186883300001450MarineSQQVTAGNTPEKSXKNVTSMGHNGTWKIQFQSPFYMWLLENLY*
JGI24006J15134_1008152433300001450MarineELKESFKNVTQIGHNGTWRFKFSSPFYMWLLENLY*
JGI24003J15210_1003822953300001460MarineQQREAGNELLESFKMVTSMGHHGEWRLKFASPFYMWLLENLY*
JGI24003J15210_1008228633300001460MarinePWAARQRESGAELPESFKNVTQLGHEGEWKFTFASPFYMWLLENLY*
JGI24003J15210_1015785223300001460MarineQQKDANIELKKSFTNVTQMGFNGTWTFSFESPFYMWLLDNLY*
GOS2223_102133813300001935MarineELPESFTNVTSMGHNGKWRFKFESPFYMWLLENLY*
GOS2233_110995933300001969MarineAGRTPVESYKNVTAMGHNGDWKWTFSSPFYMWLLENLY*
JGI25129J35166_107139733300002484MarineTQQTEAGNKPPETLKNVTLMGHNGTWTFTFESPFYMWLLENLY*
Ga0068511_110013613300005057Marine WaterANAGVELPKSFTNVTSMGHNGTWQLTFETPFYMWLLENLY*
Ga0066864_1001688163300005520MarineWASQQTEAGNKLPESYKNVTQMGHNGTWTFTFESPFYMWLLENLY*
Ga0075443_1017398313300006165MarineQQREAGTELKESFKNVTQMGHNGTWTFKFSSPFYMWLLENLY*
Ga0068471_138745433300006310MarineAGNKLPETLKNVTKIGHNGTWTFTFESPFYIWLLENLY*
Ga0068482_155869713300006338MarineEPWASEQIKKGIKLPESLKNSPDLGHNGVWTFTFESPFYMWLLEHLY*
Ga0075461_1015554433300006637AqueousATEQKTAGIELPTFIKNTTSLGHNGRWELEFSSPFYLWLLENLY*
Ga0098040_107483413300006751MarineAGNKLPETLKNVTKIGHNGTWTFTFSSPFYIWLLENLY*
Ga0070750_1008389113300006916AqueousIELRHSFKNVTQIGHDGEWKLAFSSPFYMWLLENLY*
Ga0070750_1033512933300006916AqueousESGQDLKDSFKNVTQMGFNGEWRFTFESPFYMWLLENLY*
Ga0075460_1018510713300007234AqueousTQQREKGNELPVKFKSVVCMGHNGKWHLDFDSPFYMWLLENLY*
Ga0102963_135740613300009001Pond WaterTQQREAGVELQKSFKNVTQMGHDGEWKFKFGSPFYMWLLENLY*
Ga0114980_1021655513300009152Freshwater LakeAKAGNKLPESFKNVTAMGHNGRWELEFTSPFYMWLLENLY*
Ga0114980_1035018643300009152Freshwater LakeAGNKLPESFKNVTAMGHNGRWELEFTSPFYMWLLENLY*
Ga0114974_1028011613300009183Freshwater LakeKLPESFKNVTAMGHNGRWELEFTSPFYMWLLENLY*
Ga0115548_103070513300009423Pelagic MarineQQRESGAKLQESFKNVTAMGHNGTWQFKFTSPFYMWLLENLY*
Ga0115003_1091659113300009512MarineGTELKESFKNVTAMGHNGTWRFKFESPFYMWLLEHLY*
Ga0115002_1106119113300009706MarineQQQQAGNELPKTLKNVLQMGHDGKWCLEFRSPFYMWLLENLY*
Ga0115001_1013123713300009785MarineQEPWASQQREAGTELKESFKNVTAMGHDGTWRFKFESPFYMWLLENLY*
Ga0132221_100922813300009911Meromictic PondTAGIELPTFIKNTTSLGHNGRWELEFSSPFYLWLLENLY*
Ga0129333_1086346113300010354Freshwater To Marine Saline GradientKNAGIELPKSFKNVTSMGHNGVWELRFSSPFYMWLLENLY*
Ga0133547_1140975113300010883MarineEPWASQQREAGTELKESFKNVTAMGHDGTWRFKFESPFYMWLLEHLY*
Ga0163110_1035878913300012928Surface SeawaterQQRDAGQELEESFKNVTKMGHNGNWTFTFESPFYMWLLENLY*
Ga0163109_1098512933300012936Surface SeawaterWATQQKDAGVELKKSFTNATQMGFNGTWTFSFKSPFYMWLLDNLY*
Ga0163180_1172280913300012952SeawaterREAGVDLPKTLKNVTQMGHNGTWSLGFSSPFYIWLLENLY*
Ga0182082_145012213300016771Salt MarshTQQREASKDLKDSFKNVTKMGFNGEWKFTFSSPFYMWLLENLY
Ga0181375_104889613300017718MarineQTKAGNKLPETLKNVTQMGHNGTWTFSFTSPFYMWLLENLY
Ga0181362_109800213300017723Freshwater LakeSQQRSAGNTLPESFKNVTTIGHNGRWELGFASPFYMWLLENLY
Ga0181398_109013033300017725SeawaterAGAELQEEFKNVTQMGHNGTWSFKFESPFYMWLLENLY
Ga0181416_102091433300017731SeawaterELEESFKNVTRMGHNGTWTFSFESPFYMWLLENLY
Ga0181428_105637513300017738SeawaterTQQKKAGVELEKSFTNVTQIGHNGTWEFKFATPFYMWLLENLY
Ga0181392_109267513300017749SeawaterWATQMAESGRELKESFTNVSQMGHNGEWKFTFSTPFYMWLLENLY
Ga0187219_120493213300017751SeawaterAGQELEESFKNVTKMGHNGNWTFKFESPFYMWLLENLY
Ga0181414_120749523300017759SeawaterELQEEFKNVTQMGHNGTWSFKFESPFYMWLLENLY
Ga0181425_120844113300017771SeawaterGKELQKSFKNVTQMGHDGEWQFKFASPFYMWLLENLY
Ga0181386_112367913300017773SeawaterQRQNGNNLEESFKNASRLGHNGTWKLTFQSPFYMWLLENLY
Ga0181395_110882733300017779SeawaterTQQREEGVELRNSFKNVTQIGHDGEWRLAFSSPFYMWLLANLY
Ga0181565_1038147913300017818Salt MarshIGNELEQSFKNVTAMGHNGEWRFRFASPFYMWLLENLY
Ga0181552_1047351913300017824Salt MarshDLKDSFKNVTQMGFNGTWNLKFASPFYMWLLENLY
Ga0181580_1081295513300017956Salt MarshGHTPDKTFKNVTAMGHNGTWTLAFESPFYMWLFENLY
Ga0181580_1100432923300017956Salt MarshWATQQRESGNDLKDSFKNVTKMGFNGTWNFKFESPFYMWLLENLY
Ga0181581_1056279413300017962Salt MarshAGIELRHSFKNVTQIGHDGEWKLAFSSPFYMWLLENLY
Ga0181576_1016630213300017985Salt MarshPEPWYSQQVEMGKTPPNSFKNVTAMGHNGTWQLKFQSPFYMWLLENLY
Ga0181560_1032857013300018413Salt MarshQHRESGNDLKDSFKNVTTMGFNGEWKFRFASPFYMWLLENLY
Ga0181560_1047640523300018413Salt MarshWLLAGNDLPETLKNVTIMGHDGEWKFTFSSPFYMWLLENLY
Ga0181566_1037727213300018426Salt MarshDLKDSFMNVTQMGFDGEWKFTFSSPFYMWLLENLY
Ga0206131_1035146433300020185SeawaterPEPWAARQRESGAELPEFFKNVTQLGHEGEWKFTFASPFYMWLLENLY
Ga0194125_1064689213300020222Freshwater LakeKTLPESFKNATIIGHNGRWVLSFESPFYMWLLENLY
Ga0211626_115157223300020343MarineGEDLPKTLKNVTVMGHNGTWHLSFTSPFYMWLLENLY
Ga0211493_118314623300020363MarineELQESFKNVTSMGHNGVWDFKFESPFYMWLLENLY
Ga0211703_1019607813300020367MarineWATQQRESGNDLRDSFKNVTKMGFDGEWRFTFSSPFYMWLLENLY
Ga0211583_1011659833300020397MarineTQQRNEGITLKEEFKNVTQMGFNGAWRFKFSSPFYMWLLENLY
Ga0211644_1001308973300020416MarineATQMAESGKELRESFTNVTQMGHNGQWKFTFTTPFYMWLLENLY
Ga0211702_1018089413300020422MarineKQLEESFDNVVKMGHNGTWKFKFASPFYMWLLENLY
Ga0211521_1032431213300020428MarineQIKAGVELPKTQKFVTEMGHNGTWTFTFRSPLYMWLLENLY
Ga0211708_1005374813300020436MarineTQQLEKGNELRESFKNVTQMGHNGEWRFGFGSPFYMWLLENLY
Ga0211695_1032617723300020441MarineTQQRDAGQELEESFKNVTKMGHNGNWTFTFESPFYMWLLENLY
Ga0211713_1019307913300020467MarinePEPWKSEQIKAGVELPETKKFVTEMGHNGTWTFSFTSPLYMWLLNNLY
Ga0213859_1040288733300021364SeawaterSGQDLKDSFKNVTHMGFNGRWNFKFESPFYMWLLENLY
Ga0206123_1046164023300021365SeawaterVELPESFKNVTTMGHNGQWKLSFESPFYMWLLENLY
Ga0222716_1022373633300021959Estuarine WaterAEPWASQQRQNGVELPETFKNVTEMGHNGTWTFTFESPFYMWLLENLY
Ga0222712_1034980613300021963Estuarine WaterAGNALPVAVKNVTSMGHNGRWELTFTSPFYMWLLENLY
Ga0196891_108932413300022183AqueousWATQHRESGNDLKDSFKNVTTMGFNGEWKFRFASPFYMWLLENLY
Ga0196905_113893223300022198AqueousEQRSAGKDLPEYIKNVTSMGHNGRWELEFTSPFYMWLLENLY
Ga0222629_107391523300022867Saline WaterGQELPVSFKNVNTIGHNGVWQLQFASPFYMWLLENLY
Ga0255758_1034820933300022928Salt MarshGNELPKTFKNVTQIGHNGEWRFTFESPFYQWLLENLY
Ga0255770_1045506113300022937Salt MarshELPETLKNVTRMGHNGTWTFKFESPFYMWLLENLY
Ga0255782_1043807113300023105Salt MarshKDNKIPPKTFKNVTVMGHNGSWEFEFSAPFYMWLLENLY
Ga0228658_101472753300024297SeawaterEPWASQQREAGVELQESFKNVSQIGHNGEWRFEFASPFYMWLLENLY
Ga0209535_1009338133300025120MarineTELKESFKNVTTMGHNGTWRFKFTSPFYMWLLENLY
Ga0209535_120430313300025120MarineWATQMAESGKELRESFTNVTQMGHNGEWKFTFTTPFYMWLLENLY
Ga0208303_105933833300025543AqueousNDLKDSFKNVTHMGFNGEWKFTFSSPFYMWLLENLY
Ga0208149_105841013300025610AqueousQQRESGNDLKDSFKNVTQMGFDGEWKFTFSSPFYMWLLENLY
Ga0209194_112571833300025632Pelagic MarineESGVELQESFKNVTAMGHNGTWRFKFSSPFYMWLLENLY
Ga0209602_1006253143300025704Pelagic MarineTELPESFKNVTQMGHNGEWQLSFKSPFYMWLLENLY
Ga0209199_112312913300025809Pelagic MarineATQQREAGMELKESFKNVTAMGHDGTWRFKFHSPFYMWLLENLY
Ga0209223_1009029843300025876Pelagic MarineESGAKLQESFKNVTAMGHNGTWQFKFTSPFYMWLLENLY
Ga0208644_109871213300025889AqueousGNTPEKSFKNVTTMGHNGTWTLAFESPFYMWLLENLY
Ga0208763_101899813300026136MarineAGKDLQKSFKNVTQMGHNGEWRLKFSSPFYMWLLENLY
Ga0208521_104796333300026204MarineATQQTKAGNKLPETLKNVTQMGHNGTWTFSFTSPFYMWLLENLY
(restricted) Ga0247836_106731013300027728FreshwaterTEQAAAGHKLPESFKNVTAMGHNGRWEFQFSSPFYMWLLENLY
Ga0209279_1011598513300027771MarineQQREAGTELKESFKNVTQMGHNGTWTFKFSSPFYMWLLENLY
Ga0209500_1023224433300027782Freshwater LakeNKLPESFKNVTAMGHNGRWELEFTSPFYMWLLENLY
Ga0209711_1015913733300027788MarineSQQRQAGVELQESFKNVTSIGHDGTWKFKFESPFYMWLLENLY
Ga0209089_1057933813300027838MarineTELRESFKNVTAMGHNGTWRFKFTSPFYMWLLENLY
Ga0209550_1014976013300027892Freshwater LakeTPQYPQPWATEQAAAGNKLPESFKNVTAMGHNGRWEFKFSSPFYMWLLENLY
Ga0257107_105007613300028192MarineWASQQAEKGNKLPETLKNVTQMGHNGTWTFTFTSPFYMWLLENLY
Ga0302116_117851333300031597MarineSGAKLQESFKNVTAMGHNGTWQFKFTSPFYMWLLENLY
Ga0302132_1013254813300031605MarineKQDGIDLPKTFKNVTQMGHNGTWTFSFESPFYMWLLENLY
Ga0302114_1018243113300031621MarineELPESFKNVIQMGHDGTWRFKFESPFYMWLLENLY
Ga0302136_107285213300031676MarineGTELKESFKNVTLMGHDGKWRFKFESPFYVWLLENLY
Ga0315331_1028316433300031774SeawaterTQMAESGRELRESFTNVTQMGHNGEWKFTFTTPFYMWLLENLY
Ga0315316_1161087613300032011SeawaterASQQAEKGNKPPKIIKNSTDLGHNGTWTFSFGTPFYMWLLENLY
Ga0316202_1003836763300032277Microbial MatGAELSESFKNVTQLGHEGEWKLTFSSPFYMWLLENLY
Ga0315334_1192786523300032360SeawaterPWASQQAKTGNKLPETFKNVTEMGHNGTWTFTFNSPFYMWLLENLY


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