| Basic Information | |
|---|---|
| Family ID | F095862 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 105 |
| Average Sequence Length | 63 residues |
| Representative Sequence | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH |
| Number of Associated Samples | 96 |
| Number of Associated Scaffolds | 105 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 68.57 % |
| % of genes near scaffold ends (potentially truncated) | 40.00 % |
| % of genes from short scaffolds (< 2000 bps) | 97.14 % |
| Associated GOLD sequencing projects | 89 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (88.571 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.952 % of family members) |
| Environment Ontology (ENVO) | Unclassified (37.143 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (53.333 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 105 Family Scaffolds |
|---|---|---|
| PF12071 | DUF3551 | 6.67 |
| PF13531 | SBP_bac_11 | 1.90 |
| PF01872 | RibD_C | 0.95 |
| PF01425 | Amidase | 0.95 |
| COG ID | Name | Functional Category | % Frequency in 105 Family Scaffolds |
|---|---|---|---|
| COG0154 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase | Translation, ribosomal structure and biogenesis [J] | 0.95 |
| COG0262 | Dihydrofolate reductase | Coenzyme transport and metabolism [H] | 0.95 |
| COG1985 | Pyrimidine reductase, riboflavin biosynthesis | Coenzyme transport and metabolism [H] | 0.95 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 88.57 % |
| All Organisms | root | All Organisms | 11.43 % |
| Visualization |
|---|
| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 20.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 10.48% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 6.67% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 5.71% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 4.76% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 4.76% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.81% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 3.81% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.86% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 2.86% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.86% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 2.86% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.90% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.90% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.90% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.90% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.90% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 1.90% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.90% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.95% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.95% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.95% |
| Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 0.95% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.95% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.95% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.95% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.95% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.95% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.95% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.95% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.95% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.95% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005163 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMB | Environmental | Open in IMG/M |
| 3300005164 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAC | Environmental | Open in IMG/M |
| 3300005165 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMC | Environmental | Open in IMG/M |
| 3300005168 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC | Environmental | Open in IMG/M |
| 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
| 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006038 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Host-Associated | Open in IMG/M |
| 3300006048 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Host-Associated | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006178 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Host-Associated | Open in IMG/M |
| 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
| 3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006575 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006581 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006604 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006605 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006847 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Host-Associated | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300010037 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25 | Environmental | Open in IMG/M |
| 3300010154 | Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012897 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1 | Environmental | Open in IMG/M |
| 3300012913 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2 | Environmental | Open in IMG/M |
| 3300012939 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015 | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300012988 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017965 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T | Environmental | Open in IMG/M |
| 3300018000 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex | Environmental | Open in IMG/M |
| 3300018031 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1 | Environmental | Open in IMG/M |
| 3300018066 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1 | Environmental | Open in IMG/M |
| 3300018073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 | Environmental | Open in IMG/M |
| 3300018074 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2 | Environmental | Open in IMG/M |
| 3300018083 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1 | Environmental | Open in IMG/M |
| 3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
| 3300018465 | Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS | Environmental | Open in IMG/M |
| 3300018481 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T | Environmental | Open in IMG/M |
| 3300019263 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019279 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027310 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes) | Environmental | Open in IMG/M |
| 3300027560 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes) | Environmental | Open in IMG/M |
| 3300027866 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028708 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152 | Environmental | Open in IMG/M |
| 3300028754 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157 | Environmental | Open in IMG/M |
| 3300028810 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151 | Environmental | Open in IMG/M |
| 3300030829 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030988 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031058 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031091 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031092 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031093 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031099 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300032179 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| C688J35102_1183096202 | 3300002568 | Soil | VSMSMSKADEFRQSTAEFWSKMDQKVGSVASRRKLAPARSGKMAAGSMPRARAAATAPKTKKRAKH* |
| C688J35102_1184988172 | 3300002568 | Soil | ADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAATAAPKTKKRSKH* |
| C688J35102_1203352813 | 3300002568 | Soil | VSMSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH* |
| Ga0062595_1011503342 | 3300004479 | Soil | EFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATAPKTKKRRSKH* |
| Ga0066823_100723482 | 3300005163 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH* |
| Ga0066815_100439762 | 3300005164 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRGKH* |
| Ga0066869_100360001 | 3300005165 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRSKH* |
| Ga0066809_101583371 | 3300005168 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRGKH* |
| Ga0070658_112510372 | 3300005327 | Corn Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATAPKTK |
| Ga0070683_1010621162 | 3300005329 | Corn Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0070690_1011605881 | 3300005330 | Switchgrass Rhizosphere | MSMSKAESKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0070682_1011100401 | 3300005337 | Corn Rhizosphere | MSMSKAESKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRAR |
| Ga0070660_1011187422 | 3300005339 | Corn Rhizosphere | MSKSKADEFRQSTAEFWSKMDQKVKSVAARRKLTPARSGKTPAGSMPRTRAATTAPKTKKRSKR* |
| Ga0070675_1010341801 | 3300005354 | Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATAPKTKKRSKH* |
| Ga0070713_1002858083 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0070711_1007998203 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH* |
| Ga0070700_1008613372 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWAKMDQKVGSGADRRKLAPARSGKTAAGRMPKARAAATAPKTKAATAPKTNKRAKH* |
| Ga0070665_1007009291 | 3300005548 | Switchgrass Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0070665_1017441791 | 3300005548 | Switchgrass Rhizosphere | MSMSKADEFRQSTAEFWAKMDQKAGSGAARRKLAPARSGKTAAGRMPKARAAATAPKTNKRAKH* |
| Ga0068859_1027293851 | 3300005617 | Switchgrass Rhizosphere | SKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH* |
| Ga0068864_1002445611 | 3300005618 | Switchgrass Rhizosphere | RVSMSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0068861_1011688382 | 3300005719 | Switchgrass Rhizosphere | VSMSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0070717_109824942 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MSMSKAESKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0075365_101039673 | 3300006038 | Populus Endosphere | MSMSKADEFRQSTAEFWAKMDQKVGSGAARRKLAPARSGKTAAGRMPKARAAATAPKTKKRAKH* |
| Ga0075365_101210453 | 3300006038 | Populus Endosphere | MSMSKADEFRQSTAEFWAKMDQKAGSGAARRKLAPARSGKTAAGRMPKARAATTAPKTNKRAKH* |
| Ga0075363_1004313962 | 3300006048 | Populus Endosphere | ADEFRQSTAEFWAKMDQKVGSGADRRKLAPARSGKTAAGRMPKARAAATAPKTKAATAPKTNKRAKH* |
| Ga0070712_1005662153 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MSMSKAESKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0075367_111317981 | 3300006178 | Populus Endosphere | NRRVSMSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0097621_1000933524 | 3300006237 | Miscanthus Rhizosphere | MSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0074056_117385472 | 3300006574 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRVRAAATAPKTKKRGKH* |
| Ga0074053_119800691 | 3300006575 | Soil | MSMSKADEFRQSTAEFWSKMDQKVKSVAARRKLTPARSGKTPAGSMPRTRAATTAPKTKKRSKR* |
| Ga0074048_100222212 | 3300006581 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARATATAAKTKKRSKH* |
| Ga0074060_119195381 | 3300006604 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAVATAPKTKKRSKH* |
| Ga0074057_122805303 | 3300006605 | Soil | EFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRGKH* |
| Ga0075431_1021111971 | 3300006847 | Populus Rhizosphere | TAEFWSKMDQKARSVGAGRKPASARAGKTAAGGMPRKHAAATAPKTRKRAKH* |
| Ga0111539_112446613 | 3300009094 | Populus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGRMPKARAATTAPKTNKRAKH* |
| Ga0105243_105477402 | 3300009148 | Miscanthus Rhizosphere | WSKMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATAPKTKKRSKH* |
| Ga0105242_122451861 | 3300009176 | Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATALKSKKRRSKH* |
| Ga0105248_133038262 | 3300009177 | Switchgrass Rhizosphere | MSMSKADEFRQSTAEFWAKMDQKVGSGADRRKLAPARSGKTAAGRMPKARAAATAPKTKKRAKH* |
| Ga0105237_122379161 | 3300009545 | Corn Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPGARAAATSPKTKKRRSKH* |
| Ga0126304_108796271 | 3300010037 | Serpentine Soil | MSMSKADEFRQSTAEFWAKMDQKVGSGAARRKLAPARSGKTAAGRMPRARAAATAPKTKKRAKH* |
| Ga0127503_102727731 | 3300010154 | Soil | KMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATAPKTKKRSKH* |
| Ga0134126_116222043 | 3300010396 | Terrestrial Soil | MSMSKADEFRQSTAEFWAKMDQKAGSGAARRKLAPARSGKTAAGRMPKARAAATAP |
| Ga0134124_127856701 | 3300010397 | Terrestrial Soil | MSMSKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0134127_122166071 | 3300010399 | Terrestrial Soil | RQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0150985_1174013671 | 3300012212 | Avena Fatua Rhizosphere | MSMSKADEFRQSTAEFWSKMDQRVGSVAARRKLAPARSGKTAAGSMPRARAATAAPKTK |
| Ga0150984_1179754292 | 3300012469 | Avena Fatua Rhizosphere | MSKSKADEFRQSTAEFWSKMDQKVKSVAARRKLTPARSGKTPAGSMPRTRAATTAPKTKKRSNR* |
| Ga0157285_101417291 | 3300012897 | Soil | MSMSKADEFRQSTAEFWAKMDQKAGSGAARRKLAPARSGKPAAGRMPKARAAATAPKTNKRAKH* |
| Ga0157298_104161642 | 3300012913 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATAPKTKKRRSKH* |
| Ga0162650_1000222283 | 3300012939 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGRKPRARAAAP |
| Ga0164302_101750171 | 3300012961 | Soil | EFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0164302_102076512 | 3300012961 | Soil | MSMSKADAFRQSTAEFWSKMDQKVKSVAARRKLTPARSGKTPAGSMPRTRAATTAPKTKKRSKR* |
| Ga0164309_107179451 | 3300012984 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTNKRAKH* |
| Ga0164308_119551182 | 3300012985 | Soil | SMSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH* |
| Ga0164306_113350242 | 3300012988 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPMTKKRDKH* |
| Ga0157378_110767552 | 3300013297 | Miscanthus Rhizosphere | ADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRSKH* |
| Ga0163163_105587051 | 3300014325 | Switchgrass Rhizosphere | VNRRVSMSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0163163_110009811 | 3300014325 | Switchgrass Rhizosphere | MSMSKADEFRQSTAEFWAKMDQKVGSGADRRKLAPARSGKTAAGRMPKARAAATAPKTNKRAKH* |
| Ga0157379_108495382 | 3300014968 | Switchgrass Rhizosphere | SKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH* |
| Ga0132257_1001694744 | 3300015373 | Arabidopsis Rhizosphere | MSKSKADEFRQSTAEFWSKMEQKVKSVAARRKLTPARSGKTPAGSMPRTRAATTAPKTKKRSKR* |
| Ga0132255_1007493461 | 3300015374 | Arabidopsis Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAA |
| Ga0190266_100628962 | 3300017965 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAATAAPKTKKRSKH |
| Ga0184604_101275752 | 3300018000 | Groundwater Sediment | MSMSKADEFRQSTAEFWSKMDQKVGSVATRRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH |
| Ga0184634_103185931 | 3300018031 | Groundwater Sediment | FWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAATAAPKTKKRSKH |
| Ga0184617_10964712 | 3300018066 | Groundwater Sediment | MSMSKADEFRQSTAEFWAKMDQKVGSGAARRKLAPARSGKTAAGRMPRARAAATAPKTKKRAKH |
| Ga0184624_103212761 | 3300018073 | Groundwater Sediment | MSMSKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAATAAPKTKKRSKH |
| Ga0184640_101981932 | 3300018074 | Groundwater Sediment | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGRKPRARAAATAPKTKKRGKH |
| Ga0184628_105737652 | 3300018083 | Groundwater Sediment | MSMSKADEFRQSTAEFWSKMDQKVGSVASRRKLAPARSGKTAAGSMPRARAAATAPKTKKRGKH |
| Ga0190272_106120391 | 3300018429 | Soil | MSMSKADEFRQSTAEFWAKMDQKVGSGAARRKLAPARSGKTAAGSTPGARAAATAPKTKKHSKH |
| Ga0190269_102712263 | 3300018465 | Soil | MSMSKADEFRQSTAEFWAKMDQKVGSGADRRKLAPARSGKTAAGRMPKARAAATAPKTKA |
| Ga0190271_102896675 | 3300018481 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKPAAGRMPRARATATAPKTKRSNH |
| Ga0190271_113095382 | 3300018481 | Soil | TAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRGKH |
| Ga0184647_12003982 | 3300019263 | Groundwater Sediment | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRGKH |
| Ga0184642_11363594 | 3300019279 | Groundwater Sediment | MSMSKADEFRQSTAKFWSKMDQKVGSVATRRKLAPARSGKTAAGTMPRARAAATAPKTKKRSKH |
| Ga0207688_100708323 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRSKH |
| Ga0207643_100954223 | 3300025908 | Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH |
| Ga0207663_104158713 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH |
| Ga0207657_100887214 | 3300025919 | Corn Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATALKSKKRRSKH |
| Ga0207687_104151372 | 3300025927 | Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRGKH |
| Ga0207701_114389161 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MSKAHELSEADAFRKSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRSKH |
| Ga0207706_101913063 | 3300025933 | Corn Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATALKSKKRRSKH |
| Ga0207709_109164381 | 3300025935 | Miscanthus Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAAATAP |
| Ga0207670_106078233 | 3300025936 | Switchgrass Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATALKSKKRRSKH |
| Ga0207669_109033822 | 3300025937 | Miscanthus Rhizosphere | STAEFWAKMDQKVGSGADRRKLAPARSGKTAAGRMPKARAAATAPKTKAATAPKTNKRAK |
| Ga0207669_115867181 | 3300025937 | Miscanthus Rhizosphere | ALTEEISEFVNRRVSMSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH |
| Ga0207679_105365112 | 3300025945 | Corn Rhizosphere | MSMSKAESKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGRMPKARAAATAPKTNKRAKH |
| Ga0207703_108863492 | 3300026035 | Switchgrass Rhizosphere | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPGARAAATAPKTKKRSKH |
| Ga0207708_111131511 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | VNRRVSMSMSKADEFRQSTAEFWSKMDQKVGSVAGRRKLAPGRSGKTAAGSMPRARAAATALKSKKRRSKH |
| Ga0207983_10318402 | 3300027310 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLAPGRSGKTAAGSMPRARAAATAPKTKKRSKH |
| Ga0207981_10507702 | 3300027560 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRGKH |
| Ga0209813_101282121 | 3300027866 | Populus Endosphere | MSMSKADEFRQSTAEFWAKMDQKVGSGAARRKLAPARSGKTAAGRMPKARAAATAPKTKKRAKH |
| Ga0268266_102511612 | 3300028379 | Switchgrass Rhizosphere | MSMSKADEFRQSTAEFWAKMDQKAGSGAARRKLAPARSGKTAAGRMPKARAAATAPKTNKRAKH |
| Ga0307295_100343704 | 3300028708 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAHK |
| Ga0307297_100781092 | 3300028754 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSVASRRKLAPARSGKSAAGSMPRARAAATAPKTKKRAKH |
| Ga0307294_100644791 | 3300028810 | Soil | AKMDQKVGSGAARRKLAPARSGKTAAGRMPRARAAATAPKTKKRAKH |
| Ga0308203_10624601 | 3300030829 | Soil | MSMSKADDFRRSTADFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRAKH |
| Ga0308183_11193632 | 3300030988 | Soil | SMSKADEFRRSTADFWSKMDQKVRSVASRRGLAPARLGKTAAGRMPRARAAATAPKTKRRAKH |
| Ga0308189_102371213 | 3300031058 | Soil | MSMSKAESKADEFRQSTAEFWSKMDQKVGSVATRRKLAPARSGKTAAGTMPRARAAATAP |
| Ga0308201_101501781 | 3300031091 | Soil | EFVKQESIVNRRVSMSMSKADEFRQSTAEFWSKMDQKVGSVAARRKLAPARSGKTAAGSMPRARAAATAPKTKKRGKH |
| Ga0308204_101926142 | 3300031092 | Soil | ADFWSKMDQKVRSVASRRGLAPARLGKTAAGGMLRVRAAAMAPKTKKRAKH |
| Ga0308197_101564421 | 3300031093 | Soil | RQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRARAAATAPKTKKRGKH |
| Ga0308181_10275101 | 3300031099 | Soil | MSMSKADEFRQSTAEFWSKMDQKVGSVASRRKLSPARSGKAAAGSMPRARAAATKTKKRSKH |
| Ga0307468_1000950652 | 3300031740 | Hardwood Forest Soil | MSMSKADEFRQSTAEFWAKMDQKVGSGAARRKLAPARSGKTAAGRMPRARAAATAPKTKRSKH |
| Ga0307468_1021630281 | 3300031740 | Hardwood Forest Soil | QSTAEFWSKMDQKVGSGAARRKLAPARSGKTAAGSMPRARAVATAPKTKKRSKH |
| Ga0310889_103766241 | 3300032179 | Soil | VKQESIVNRRVSMSMSKADEFRQSTAEFWSKMDQKVGSGAARRKLTPARSGKTAAGSMPRVRAAATAPKTKKRGKH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |