Metagenome Family F095635

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095635
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	75 residues
Representative Sequence	MLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKTKTQDRLQRERRRLALLHRSRQFLLSDEFSAVKGRRRH
Number of Associated Samples	53
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.38 %
% of genes near scaffold ends (potentially truncated)	27.62 %
% of genes from short scaffolds (< 2000 bps)	99.05 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (82.857 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil (15.238 % of family members)
Environment Ontology (ENVO)	Unclassified (32.381 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.476 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.31% β-sheet: 0.00% Coil/Unstructured: 43.69%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF03330	DPBB_1	1.90
PF00239	Resolvase	1.90
PF14229	DUF4332	1.90
PF04193	PQ-loop	0.95
PF01329	Pterin_4a	0.95
PF05598	DUF772	0.95
PF01909	NTP_transf_2	0.95
PF01526	DDE_Tnp_Tn3	0.95
PF00571	CBS	0.95
PF00536	SAM_1	0.95
PF07883	Cupin_2	0.95
PF07995	GSDH	0.95
PF09990	DUF2231	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.90
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.90
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.95
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.95
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
All Organisms	root	All Organisms	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
cellular organisms	root	All Organisms → cellular organisms	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.19 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
Discoba	clade	All Organisms → cellular organisms → Eukaryota → Discoba	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %
Euglenozoa	phylum	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %
Kinetoplastea	class	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Metakinetoplastina	subclass	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina	0.95 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.95 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.95 %
Trypanosomatida	order	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida	0.95 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.95 %
Trypanosomatidae	family	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida → Trypanosomatidae	0.95 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Trypanosoma	genus	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida → Trypanosomatidae → Trypanosoma	0.95 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.95 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Schizotrypanum	subgenus	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida → Trypanosomatidae → Trypanosoma → Schizotrypanum	0.95 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.95 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Trypanosoma cruzi	species	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida → Trypanosomatidae → Trypanosoma → Schizotrypanum → Trypanosoma cruzi	0.95 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.95 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT02ISAM4	Not Available	544	Open in IMG/M
3300000956\|JGI10216J12902_107073563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	2293	Open in IMG/M
3300001305\|C688J14111_10047266	Not Available	1297	Open in IMG/M
3300001686\|C688J18823_10187875	Not Available	1400	Open in IMG/M
3300001686\|C688J18823_10474787	Not Available	804	Open in IMG/M
3300002568\|C688J35102_117818658	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida → Trypanosomatidae → Trypanosoma → Schizotrypanum → Trypanosoma cruzi	508	Open in IMG/M
3300002568\|C688J35102_118213161	Not Available	539	Open in IMG/M
3300002568\|C688J35102_118437231	Not Available	559	Open in IMG/M
3300002568\|C688J35102_118580716	Not Available	574	Open in IMG/M
3300002568\|C688J35102_118839972	Not Available	603	Open in IMG/M
3300002568\|C688J35102_118980661	Not Available	621	Open in IMG/M
3300002568\|C688J35102_119850945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	793	Open in IMG/M
3300002568\|C688J35102_120079133	Not Available	871	Open in IMG/M
3300002568\|C688J35102_120084960	Not Available	873	Open in IMG/M
3300002568\|C688J35102_120427572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061	Open in IMG/M
3300004081\|Ga0063454_100404759	Not Available	915	Open in IMG/M
3300004081\|Ga0063454_101463672	Not Available	582	Open in IMG/M
3300004081\|Ga0063454_101581211	Not Available	565	Open in IMG/M
3300004463\|Ga0063356_104656246	Not Available	590	Open in IMG/M
3300004479\|Ga0062595_100767802	Not Available	788	Open in IMG/M
3300005435\|Ga0070714_100331266	Not Available	1426	Open in IMG/M
3300005435\|Ga0070714_100826816	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300005436\|Ga0070713_100481063	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300005436\|Ga0070713_100631802	Not Available	1019	Open in IMG/M
3300005539\|Ga0068853_102484600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300005575\|Ga0066702_10757352	Not Available	578	Open in IMG/M
3300005575\|Ga0066702_10907356	Not Available	526	Open in IMG/M
3300005614\|Ga0068856_101952324	Not Available	598	Open in IMG/M
3300005834\|Ga0068851_10925721	Not Available	547	Open in IMG/M
3300006028\|Ga0070717_10374788	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300006237\|Ga0097621_102316764	Not Available	514	Open in IMG/M
3300006755\|Ga0079222_12613168	Not Available	508	Open in IMG/M
3300006954\|Ga0079219_10421273	Not Available	896	Open in IMG/M
3300006954\|Ga0079219_10525035	Not Available	838	Open in IMG/M
3300006954\|Ga0079219_11073181	Not Available	679	Open in IMG/M
3300006954\|Ga0079219_11798372	Not Available	573	Open in IMG/M
3300006954\|Ga0079219_11942804	Not Available	557	Open in IMG/M
3300007004\|Ga0079218_11401566	Not Available	746	Open in IMG/M
3300009011\|Ga0105251_10590509	Not Available	526	Open in IMG/M
3300009174\|Ga0105241_12231251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300009551\|Ga0105238_11195255	Not Available	785	Open in IMG/M
3300009840\|Ga0126313_11278432	Not Available	606	Open in IMG/M
3300010038\|Ga0126315_10083366	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300010042\|Ga0126314_10248493	Not Available	1261	Open in IMG/M
3300010042\|Ga0126314_10865693	Not Available	667	Open in IMG/M
3300010044\|Ga0126310_10944880	Not Available	675	Open in IMG/M
3300010375\|Ga0105239_12359177	Not Available	619	Open in IMG/M
3300012212\|Ga0150985_101980793	Not Available	1088	Open in IMG/M
3300012212\|Ga0150985_104331742	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300012212\|Ga0150985_105550757	Not Available	520	Open in IMG/M
3300012212\|Ga0150985_108488771	Not Available	1122	Open in IMG/M
3300012212\|Ga0150985_112423010	Not Available	702	Open in IMG/M
3300012212\|Ga0150985_114430878	Not Available	576	Open in IMG/M
3300012212\|Ga0150985_115400144	Not Available	534	Open in IMG/M
3300012212\|Ga0150985_117395168	Not Available	846	Open in IMG/M
3300012212\|Ga0150985_117463507	Not Available	644	Open in IMG/M
3300012212\|Ga0150985_118457292	Not Available	546	Open in IMG/M
3300012212\|Ga0150985_121198489	Not Available	515	Open in IMG/M
3300012212\|Ga0150985_122945094	Not Available	672	Open in IMG/M
3300012469\|Ga0150984_100418943	Not Available	885	Open in IMG/M
3300012469\|Ga0150984_102936104	Not Available	652	Open in IMG/M
3300012469\|Ga0150984_108943955	Not Available	591	Open in IMG/M
3300012469\|Ga0150984_111018163	Not Available	989	Open in IMG/M
3300012469\|Ga0150984_111699835	Not Available	798	Open in IMG/M
3300012469\|Ga0150984_119237650	Not Available	505	Open in IMG/M
3300012469\|Ga0150984_120519246	Not Available	507	Open in IMG/M
3300012469\|Ga0150984_122951996	Not Available	627	Open in IMG/M
3300012469\|Ga0150984_123476384	Not Available	539	Open in IMG/M
3300012469\|Ga0150984_123687009	Not Available	726	Open in IMG/M
3300012905\|Ga0157296_10313337	Not Available	554	Open in IMG/M
3300012957\|Ga0164303_11279267	Not Available	541	Open in IMG/M
3300012961\|Ga0164302_11832472	Not Available	513	Open in IMG/M
3300012985\|Ga0164308_11769299	Not Available	575	Open in IMG/M
3300012987\|Ga0164307_10609219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	843	Open in IMG/M
3300012987\|Ga0164307_11411036	Not Available	587	Open in IMG/M
3300012989\|Ga0164305_10504184	Not Available	953	Open in IMG/M
3300013102\|Ga0157371_11641988	Not Available	504	Open in IMG/M
3300013105\|Ga0157369_10901492	Not Available	907	Open in IMG/M
3300014497\|Ga0182008_10068762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1742	Open in IMG/M
3300014497\|Ga0182008_10147281	Not Available	1180	Open in IMG/M
3300014497\|Ga0182008_10172968	Not Available	1091	Open in IMG/M
3300014497\|Ga0182008_10176905	Not Available	1079	Open in IMG/M
3300014497\|Ga0182008_10199030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300014497\|Ga0182008_10466386	Not Available	689	Open in IMG/M
3300014497\|Ga0182008_10467681	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300014497\|Ga0182008_10901956	Not Available	520	Open in IMG/M
3300014969\|Ga0157376_12536156	Not Available	552	Open in IMG/M
3300015262\|Ga0182007_10365886	Not Available	545	Open in IMG/M
3300018432\|Ga0190275_13241231	Not Available	527	Open in IMG/M
3300024430\|Ga0196962_10075918	Not Available	1028	Open in IMG/M
3300025915\|Ga0207693_10970152	Not Available	650	Open in IMG/M
3300025928\|Ga0207700_10841107	Not Available	821	Open in IMG/M
3300025929\|Ga0207664_11921574	Not Available	514	Open in IMG/M
3300026078\|Ga0207702_10486351	Not Available	1202	Open in IMG/M
3300031852\|Ga0307410_10736935	Not Available	833	Open in IMG/M
3300031938\|Ga0308175_101116759	Not Available	875	Open in IMG/M
3300031939\|Ga0308174_10564055	Not Available	939	Open in IMG/M
3300031939\|Ga0308174_11021197	Not Available	702	Open in IMG/M
3300031995\|Ga0307409_100529427	Not Available	1153	Open in IMG/M
3300031996\|Ga0308176_10243615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1719	Open in IMG/M
3300031996\|Ga0308176_10280502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614	Open in IMG/M
3300031996\|Ga0308176_10521619	Not Available	1210	Open in IMG/M
3300031996\|Ga0308176_10952187	Not Available	904	Open in IMG/M
3300032074\|Ga0308173_10533677	Not Available	1055	Open in IMG/M
3300034268\|Ga0372943_0156381	All Organisms → cellular organisms → Bacteria → Proteobacteria	1390	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.24%
Host-Associated	Host-Associated	43.81%
Engineered	Engineered	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.24%
Plants	Host-Associated → Plants	43.81%
Solid Waste	Engineered → Solid Waste	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.19%
Roots	Host-Associated → Plants → Roots	0.95%
Grass	Engineered → Solid Waste → Grass	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.43%
Loam	Environmental → Terrestrial → Soil → Loam	22.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	11.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Sand	Environmental → Terrestrial → Soil → Sand	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Composting	Engineered → Solid Waste → Grass → Composting	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.14%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	15.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	15.24%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	11.43%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	9.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_05370620	2170459016	Switchgrass, Maize And Mischanthus Litter	MLHALPTPPSYRHRLVQIEALIAQAERNLARHPAQAGKTKTRDRLQRERRRLELLHRSRQFLLSDEFPPVTAGRR
JGI10216J12902_1070735633	3300000956	Soil	MLHALPPSYHRRALDQLDALIALAERDLVQHDAVRTGKAETRDRLQGARRRLALLHRSRQFLLSDEFSRIKAGRH*
C688J14111_100472661	3300001305	Soil	GMVVLPEILGGMPTMLHALPPSYRQRALVQVEALIGQAERNLARHQPAGTGKAKTQDRLQRERRRLALLRRSRRFLLSDEFSRITAGRH*
C688J18823_101878756	3300001686	Soil	LPSSYRQRALAQVEALIAEAERSLARHPAGTGKTKTRDRMQREQRCLALLYRSRQFLCSDEFSAVKGGRRH*
C688J18823_104747871	3300001686	Soil	RATAILSPRALAQIEVLIAEAEKSLARHPAGTGKTKTRDRMQREQRRLALLHRSRQFLLSDEFSAVKGGRRH*
C688J35102_1178186581	3300002568	Soil	MLRALPPSYRQRALSEIEALIARAERDLARHNAAQTGKAKAQDRLQRERRRLALLYRSRQFLCSDEFS
C688J35102_1182131611	3300002568	Soil	MAGMVVLPEILGGMPTMLHALPPSYRQRALVQVEALIGQAERNLARHQPAGTGKAKTQDRLQRERRRLALLRRSRRFLLSDEFSRIKAGRR*
C688J35102_1184372311	3300002568	Soil	MLHALPPSYRQRALAQVEALITEAERSLARQPAKTGKTKTRDRLQREQRRLALLHRSRQFLLSDEFSAVKGRRRH*
C688J35102_1185807162	3300002568	Soil	VLHVLPRPPSYRQRALVEIEALIAQAERNLARHHAAQTGKSKTRDRVERERRRLALLYRSRQFLLSDEFPPVTADRH*
C688J35102_1188399721	3300002568	Soil	MLHALPLSYRQRALAQVEALIAQAERSLARHSAETGKAKTQDRLQRERRRLALLHRSRQFLCSDEFSTVKGRRRH*
C688J35102_1189806611	3300002568	Soil	MLRALPPSYRQRALTEIEALIARAERNLARHNAAQTGKTKTRDRMQREQRRLALLYRSRQFLLSDEFSAVKGCRRH*
C688J35102_1198509452	3300002568	Soil	MLRALPPSYRQRALTEIEALIARAERDLARRGAAQIGKAEAQDRLRRERRRLALLYRSRQFLCSDEF
C688J35102_1200791332	3300002568	Soil	MLHVLPLSYRQRALAQIEALIAQAERDVARHNAARAGKTKTQDRLQRERRRLALLYRSRQFLLSDEFSAVKAGRRH*
C688J35102_1200849601	3300002568	Soil	MLHALPPSYRQRALAQVEALIADAERSLARQPSQTGTTRTQGRLQRERRRLALLHRSRQFLLSDEFSAVKARRRH*
C688J35102_1204275722	3300002568	Soil	MLHALPPSYRQRALVQIEALIAQAERDVARHPAQTGKTETRDRLQRERRRLALLYRSRQFLLSDEF
Ga0063454_1004047591	3300004081	Soil	MLHALPPSYRQRALVQIEALIAQAERDVARHPAQTGKTETRDRLQRERRRLALLYRSRQFLLSDEFSAVKAGRRH*
Ga0063454_1014636722	3300004081	Soil	MLHALPRSYRQRALAQVEALIAQAERSLARQPVQTGETKTRDRLRREQRRLALLHRSRQFLLSDEFSAVKARRRH*
Ga0063454_1015812112	3300004081	Soil	MLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKTKTQDRLQRERRRLALLHRSRQFLLSDEFSAVKGRRRH*
Ga0063356_1046562462	3300004463	Arabidopsis Thaliana Rhizosphere	MLYALPLSYRQRALVQIDALIAQAERDLKQHDPARTGKAETGDKLPDEQRRLALLHRSRQFLLSDEFSRIKAGRH*
Ga0062595_1007678021	3300004479	Soil	VLHALPPSYRRRALAQVEALIAQAERNLARHQPAQTGKTKTEARLQRERRRLALLHRSRQFLCSDEFSRIKAG
Ga0070714_1003312662	3300005435	Agricultural Soil	VLHALPPSYRRRALAQVEALIAQAERNLARHQPAQTGKTKTEARLQRERRRLALLHRSRQFLCSDEFSRIKAGRR*
Ga0070714_1008268161	3300005435	Agricultural Soil	MLHALPLSYRRRALAQVEALIADAERSLARHPAGTGKTETRDRMQREQRRLALLHRSRQFLLSDEFSAVKGRRRH*
Ga0070713_1004810633	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLHALPLSYRRRALAQVEALIADAERSLARHPAGTGKTETRDRMQREQRRLALLHRSRQFLLSDEFSAVRAGRRR*
Ga0070713_1006318021	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVKARRRH*
Ga0068853_1024846002	3300005539	Corn Rhizosphere	MLRALPPSYRQRALSEIEALIARAERDLARHDAAQTGKAKAQDRLQRERRRLALLYRSRQFLCSDEFSAV
Ga0066702_107573522	3300005575	Soil	SSYRQRALAQVEALIAEAERSLARHPAGTGKTETRDRMRREQRCLALLYRSRQFLCSDEFSRIKAGRR*
Ga0066702_109073561	3300005575	Soil	MLHALPPSYRQRALAQVEALIAEAERSLARQPVQTGKTKTRDRLQRERRRLALLHRSRQFLLSD
Ga0068856_1019523241	3300005614	Corn Rhizosphere	VLHALPPSYRQRALAQVEALIAQAEMSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVKGRRRH*
Ga0068851_109257211	3300005834	Corn Rhizosphere	MLHALPPSYRQRALAQVEALIADAERSLARQPSQTGTTRTQGRLQREQRRLALLHRSRQFLLSDEFSAVKARRRH*
Ga0070717_103747884	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLHALPPSYRRRALAQVEALIAQAERSLARHPAGTGKTETRDRMQREQRRLALLHRSRQFLLSDEFSAVRAGRRR*
Ga0097621_1023167641	3300006237	Miscanthus Rhizosphere	VLHALPPFYRQRALAQVEALIAEAERSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVNGRRSH*
Ga0079222_126131681	3300006755	Agricultural Soil	MLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKAETQGRLQRERRRLALLHRSRQFLLSDEFSAVKAHRRH*
Ga0079219_104212732	3300006954	Agricultural Soil	MLHALPPSYRQRALAQVEALIAEAERSLARQPAQTGKTKTRDRLEREQRRLALLHRSRQFLLSDEFSAVKGRRRH*
Ga0079219_105250352	3300006954	Agricultural Soil	MLHALPTPPSYRHRLVQIEALIAQAERNLARHPAQAGKTKTRDRLQRERRRLELLHRSRQFLLSDEFPPVTAGRR*
Ga0079219_110731812	3300006954	Agricultural Soil	MLHALPSSYRQRALAQVEALIAQAEMSLARHPAGTGKTRDKLQREQRRLALLHRSRQFLPSDEFSAVEGRRRH*
Ga0079219_117983721	3300006954	Agricultural Soil	MLHALPPSYCRRALAQVEALIAQAETSLARHDTARTGKAETEERLRRELRRLALLHRSRQFLVSDEFSKVEAGRRH*
Ga0079219_119428041	3300006954	Agricultural Soil	ALPSSYRQRALVQVEALIAQAERDLARLDAAPTGRAKTQDRVQRERRRLALLHRSRQFLLSDEFSKVRAGRRH*
Ga0079218_114015661	3300007004	Agricultural Soil	MLYALPSFYRRRALVQVEALIVQAERDLTRHDAARTGKAKTEDRLQRERRRLALLHRSRQFLLSDEFSRVKAGRR*
Ga0105251_105905092	3300009011	Switchgrass Rhizosphere	MLHALPSSYRQRALAQVEALIAQAERSLARHPAETGKAEMQDRLQREQRCLALLYRSRQFLCSDEFSAVTGRRRH*
Ga0105241_122312511	3300009174	Corn Rhizosphere	MLHALPSSYRQRALAQVEALIAQAERSLARHPAETGKTKTQGRLQRERRRLALLHRSRQFLLSDEFSAVKGRSRN*
Ga0105238_111952551	3300009551	Corn Rhizosphere	MLHALPPSYRQRALAQVEALIADAERSLARQPSQTGTTRTQGRLQREQRRLALLHRSRQFLLSDEFSVVKARCSQ*
Ga0126313_112784321	3300009840	Serpentine Soil	MIHALPLSYRQRALDQIDALITQAERDLMRRDAARTGKAETRDRLQGEQRRLALLHRSRQFLLSDEFSRL
Ga0126315_100833661	3300010038	Serpentine Soil	MLHVLPPSYHQRALAQVEALIAQAERDLTRHDVVRTGEAETLDGLGRERRRLALLHRSRQFLLSDEFSTLKAGRH
Ga0126314_102484931	3300010042	Serpentine Soil	MLHVLPPSYRQRALVQVEALIAQAERDLTRHDVARTGKAETLGGLERERRRLALLHRSRQFLLSDEFSTLKAGRR*
Ga0126314_108656931	3300010042	Serpentine Soil	MLHALPPSYRRRALVQLDALIALAERDLVQHDAARTGKAEARDRLQGEQRRLALLHRSRQFLLSDEFSRIKAGRH*
Ga0126310_109448801	3300010044	Serpentine Soil	MLHALPLSYRQRALDQIDVLIAQAERDLVQHDAARTGKAEARDRLQGEQRRLALLHRSRQFLLSDEFSRIKAGRH*
Ga0105239_123591771	3300010375	Corn Rhizosphere	LSEIEALIARAERDLARHDAAQTGKSKAQDRLRRERRRLALLYRSRQFLLSDEFSAVKGRRRH*
Ga0150985_1019807931	3300012212	Avena Fatua Rhizosphere	LAEIEALIARAERDLARHDAAQTGKAEARDRLQRERRRLALLYRSRQFLLSDEFSAVKGRRRH*
Ga0150985_1043317423	3300012212	Avena Fatua Rhizosphere	MLHALPPSYRRRALVQVEALIARAERDLARRDADRTGKAELRDGPRPERRLALLRRSRQCLLSD
Ga0150985_1055507572	3300012212	Avena Fatua Rhizosphere	ATMLHALSRAPSYRQRALVQIEALITQVERNLARHSAAQTGKTKTRDRMQREQRRLALLYRSRQFLLSDEFSAVKAGRRH*
Ga0150985_1084887712	3300012212	Avena Fatua Rhizosphere	MLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKAETRDRLQRERRRLALLRRSREFLLSDEFSAVKGRRRH*
Ga0150985_1124230101	3300012212	Avena Fatua Rhizosphere	MPTMLHALPPSYRQRALVQIEALIAQAERNLARYDAVRTGKAKTQDRLQRERRRLALLHRSRQFLLSDEFSAVKAGRR*
Ga0150985_1144308781	3300012212	Avena Fatua Rhizosphere	STMLHALPPSYRQRALAQVEALNAEAEKGLTRQPAQTGETKAQDRLRRERRRLALLRRSREFLSDEFSAVKGRRRH*
Ga0150985_1154001442	3300012212	Avena Fatua Rhizosphere	STMLHALPPSYRQRALAQVEALITDAERSLARQPSQTGTTRTQGRLQREQRRLALLHRSRQFLLSDEFSAVKARRRH*
Ga0150985_1173951681	3300012212	Avena Fatua Rhizosphere	MFHALPPSYRQRALAQVEALIAEAERSLARHPAGTGKTETPDRLRREQRRLALLHRSRQFLLSDEFSAVRGRRHH*
Ga0150985_1174635073	3300012212	Avena Fatua Rhizosphere	ALSEIEALIARAERDLARHDAAQTGKAKAQDRLQRERRRLALLYRSRQFLCSDEFSAVTAGRRH*
Ga0150985_1184572922	3300012212	Avena Fatua Rhizosphere	GRLIMLRALPPSYRQRALAQVEALIAEAERSLARQPAQTGKTKTRDRLQREQRRLALLHRSRQFLLSDEFSAVKGRRRH*
Ga0150985_1211984891	3300012212	Avena Fatua Rhizosphere	RSTMLHALPPSYRQRALAQVEALIAQAERDLARHQPARPGEAETRDRLRRERRRLALLQRSRQFLLSDEFSAVKAGRRH*
Ga0150985_1229450941	3300012212	Avena Fatua Rhizosphere	VQPCALPIWSTMLHALPPSYRHRALVQIEALIAQAERDVARHPAQTGKTETRDKLQRERRRLALLYRSRQFLLSDEFSAVKAGRRH*
Ga0150984_1004189431	3300012469	Avena Fatua Rhizosphere	MLHVLPEPPSYRQRALVEIEALIAQAEKNLARHYAAQPAKAKAQDRLQRERRRLALLYRSRQFLLSDEFPPVTAGRH*
Ga0150984_1029361041	3300012469	Avena Fatua Rhizosphere	GRSTMLHALPSSYRQRALAQVEALIAEAERSLARHPAGTGKTKTRDRMQREQRRLALLHRSRQFLLSDEFSAVKGGRRH*
Ga0150984_1089439552	3300012469	Avena Fatua Rhizosphere	MLSRSPSYRQRALTGIEALIARAERDLARHDAAQTGKGKAQDRLQRERRRPALLHRSHEFLLSDEFPAVKGGRRR*
Ga0150984_1110181632	3300012469	Avena Fatua Rhizosphere	MFHALPPSYRQRALAQVEALIAEAERSLARHPAGTGKTETPDRLRREQRRLALLHRSRQFLLSDEFSAVKGRRRH*
Ga0150984_1116998352	3300012469	Avena Fatua Rhizosphere	MLHALPPSYRQRALAQVEALIAEAEMSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVKARRRH*
Ga0150984_1192376501	3300012469	Avena Fatua Rhizosphere	ALPPSYRQRALSEIEALIARAERDLARHNAAQTGKDKAQDRLRSERRRLALLYRSRQFLCSDEFSAVTAGRRH*
Ga0150984_1205192461	3300012469	Avena Fatua Rhizosphere	LAEIEALIARAERDLARHDAAQIGKAKTQDRLRRERRRLALLYRSRQFLCSDEFSAVTVRRRH*
Ga0150984_1229519963	3300012469	Avena Fatua Rhizosphere	YRQRALVQIEALIVQAERDLARHHAAQPSKAKVRDRLQRERRRLALLYRSRQFLLSDAFPAEMAAGH*
Ga0150984_1234763842	3300012469	Avena Fatua Rhizosphere	MFHVLPPSYRQRALVRVEALIAQAERNLARYDAVRTGKTKTQDRLQRERRRLALLHRSRQFLLSDEFSAVKAGRH*
Ga0150984_1236870092	3300012469	Avena Fatua Rhizosphere	LSEIEALIARAERDLARHDAAQTGKAKAQDRLQRERRRLALLYRSRQFLCSDEFSAVTAGRRH*
Ga0157296_103133372	3300012905	Soil	MLHALPPSYRQRALAQVEALIAEAERSLARQPAQTGKTKTEARLQRERRRLALLHRSRQFLCSDEFSRIKAGRR*
Ga0164303_112792671	3300012957	Soil	MLHALPPSYRQRALAQVEALIAQAERSLAWHPAGTGKTETQDRLQRERRRLALLHRSRQFLLSDEFSAV
Ga0164302_118324721	3300012961	Soil	MLHALPRSYHRRALAQVEALIAQAERSLARHPAETGKAEMQDRLQREQRCLALLYRSRQFLCSDEFSAVKARRRH*
Ga0164308_117692991	3300012985	Soil	MTLRVLSRPPSYRQRALSEIEALIARAERDLTRHNAAQTGKAKVQDRLQREWRRLALLHRSRQFLLSDEFSAVKGRRRH*
Ga0164307_106092192	3300012987	Soil	MVREKRSMTLRVLSRPPSYRQRALSEIEALIARAERDLTRHNAAQTGKAKVQDRLQRERRRLALLYRSRQFLLSDEFPAVTAGRRR*
Ga0164307_114110362	3300012987	Soil	VLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKAEMQDRLQREQRCLALLYRSRQFLCSDEFSAVKGGRRH*
Ga0164305_105041842	3300012989	Soil	VLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVKARRRH*
Ga0157371_116419881	3300013102	Corn Rhizosphere	MLHALPSPYRRRALAQVEALIAQAETSLARHDTARTGEAETRDRLRHERRRLALLHWSRQFLLSDEFSAVRAGRRH*
Ga0157369_109014921	3300013105	Corn Rhizosphere	MLHALPSSYRQRALAQVEALIAQAERSLARHPAETGKAEMQDRLQREQRCLALLYRSRQFLCSDEFSAVKGRRRH*
Ga0182008_100687621	3300014497	Rhizosphere	PMLRALPPSYRQRALSEIEALIARAERDLARHDAAQTGKSKAQDRLRRERRRLALLYRSRQFLLSDEFSAVKGRRRH*
Ga0182008_101472813	3300014497	Rhizosphere	MLRALPPSYRQRALAEIEALIARAERDLARHDAAQIGKAKTQDRLRRERRRLALLYRSRQFLCSDEFSAVTVRRRH*
Ga0182008_101729683	3300014497	Rhizosphere	LLKGETTVLHALPPSYRRRALAQVEALIAQAERNLARHQPAQTGKTKTEARLQRERRRLALLHRSRQFLCSDEFSRIKAGRR*
Ga0182008_101769052	3300014497	Rhizosphere	MLHALPTPPSYRHRLVQIEALIAQAERNLARHPAQAGKTKTRDRLQRERRRLELLHRSRQFLLSDEFPPVTAGCR*
Ga0182008_101990302	3300014497	Rhizosphere	MLHALPSSYRQRALVRVEALIAQAERDLARLDAAPTGRAKIQDRVQHERRRLALLHRSRQFLLSDEFSKVRAGRRH*
Ga0182008_104663861	3300014497	Rhizosphere	MLHALPPSYRRRALAQVEALIAQAETSLARHDTARTGKAETRDRLRRELRRLALLRRSRQFLLSDEFSAVRAGCRH*
Ga0182008_104676811	3300014497	Rhizosphere	MLRALPPSYRQRALAQVEALIAEAERSLARQPAQTGKTKTRDRLQREQRSLALLHRSRQFLLSDEFSAVKARRRH*
Ga0182008_109019561	3300014497	Rhizosphere	MLHALPSSYRQRALAQVEALIAQAERSLARHPAETGKAKTQGRLQRERRRLALLHRSRQFLLSDEFSAVKGRRRH*
Ga0157376_125361561	3300014969	Miscanthus Rhizosphere	MLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKAEMQDRLRREQRCLALLYRSRQFLCSGEFSAVKARRRQ*
Ga0182007_103658861	3300015262	Rhizosphere	MLHALPSSYRQRALVRVEALIAQAERDLARLDAAPTGRAKIQDRVQHERRRLALLHRSRQFLL
Ga0190275_132412311	3300018432	Soil	MLHALPPSYRRRALDQLDVLIALAERDLVQHDAVRTGKAETRDRLQGARRRLALLHRSRQFLLSDEFSRIKAGRH
Ga0196962_100759182	3300024430	Soil	MLYALPPSYRRRALVQVEALIARAERDLARHDAAPAGKAEAEDRLRRERRRLALLHRSRQFLLSDEFSRVKAGRR
Ga0207693_109701521	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VLHALPPSYRQRALAQVEALIAQAEMSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVKGRRRH
Ga0207700_108411071	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLHALPLSYRRRALAQVEALIAQAERSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVKARRRH
Ga0207664_119215741	3300025929	Agricultural Soil	MLHALPLSYRRRALAQVEALIADAERSLARHPAGTGKTETRDRMQREQRRLALLHRSRQFLLSDEFSAVKGRRRH
Ga0207702_104863511	3300026078	Corn Rhizosphere	TMLHALPPSYRQRALVQVEALIAQAERNLARHQPAQTGKTKTEARLQRERRRLALLHRSRQFLLSDEFSAVKARRRH
Ga0307410_107369351	3300031852	Rhizosphere	MLYALPPSYRQRALVQIDALIAQAERDLTRPDAARAGKAKSEDRLRRERRRLALLHRSRQFLLSDEFTRVKAAGRR
Ga0308175_1011167592	3300031938	Soil	MLHALPPSYRQRALAQVEALIAQAERSLARHPAETGKAETQDRLQREQRCLALLYRSRQFLCSDEFSAVKARRRH
Ga0308174_105640551	3300031939	Soil	MLHALPPSYRQRALAQVEALIAQAERSLARQPVQTGETKTRDRLRREQRRLALLHRSRQFLLSDEFSAVKARRRR
Ga0308174_110211972	3300031939	Soil	MLHALPTPPSYRHRLVQIEALIAQAERNLVRHPTQAGKTKTRDRLQRERRRLELLHRSRQFLLSDEFPPVTAGRR
Ga0307409_1005294271	3300031995	Rhizosphere	MLYALPPSYRRRALVQVEALIAQAERDLTRHDAARTGKAKAEDRLRRERRRLALLHRSRQFLLSDEFSRVKAGRR
Ga0308176_102436154	3300031996	Soil	VLHALPPSYRRRALAQVEALIAQAERNLARHQPAQTGKTKTEARLQRERRRLVLLHRSRQFLCSDEFSRIKAGRR
Ga0308176_102805022	3300031996	Soil	MLHALPPSYRQRALAQVEALIAQAEMSLARHPAETGKAKTQDRLQREQRCLALLYRSRQFLCSDEFSAVKARRRH
Ga0308176_105216192	3300031996	Soil	MLHALPTPPSYRHRLVQIEALIAQAERNLAQHPAQAGKTKTRDRLQRERRRLALLHRSRQFLLSDEFSAVKARRRR
Ga0308176_109521871	3300031996	Soil	MLHALPPSYRQRALAQVEALIAEAERSLARQPAQTGKTKTRDRLEREQRRLALLHRSRQFLLSDEFSAVKGRRRH
Ga0308173_105336771	3300032074	Soil	VLHALPPSYRQRALAQVEALIAQAERSLARQPVQTGESRTQDRLQRERRRLALLRRSRQFLLSDEFSRVKAGRR
Ga0372943_0156381_810_1001	3300034268	Soil	LAEIEALIARAERDLARHSAAQTGKAEARDKLQRERRRLALLHRSCEFLLSDEFPAVKAGRRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095635

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences