NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F095220

Metagenome Family F095220

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095220
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 77 residues
Representative Sequence YQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP
Number of Associated Samples 64
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.91 %
% of genes near scaffold ends (potentially truncated) 93.33 %
% of genes from short scaffolds (< 2000 bps) 80.95 %
Associated GOLD sequencing projects 53
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (60.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(43.809 % of family members)
Environment Ontology (ENVO) Unclassified
(80.952 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(80.952 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.00%    β-sheet: 0.00%    Coil/Unstructured: 70.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF13231PMT_2 40.95
PF00535Glycos_transf_2 8.57
PF00072Response_reg 1.90
PF08281Sigma70_r4_2 1.90
PF01075Glyco_transf_9 1.90
PF03631Virul_fac_BrkB 0.95
PF13189Cytidylate_kin2 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0859ADP-heptose:LPS heptosyltransferaseCell wall/membrane/envelope biogenesis [M] 1.90
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 0.95

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.00 %
All OrganismsrootAll Organisms40.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002558|JGI25385J37094_10021139Not Available2322Open in IMG/M
3300002558|JGI25385J37094_10181485All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300002561|JGI25384J37096_10024560Not Available2348Open in IMG/M
3300002561|JGI25384J37096_10130666Not Available828Open in IMG/M
3300002562|JGI25382J37095_10073602Not Available1268Open in IMG/M
3300002562|JGI25382J37095_10111896All Organisms → cellular organisms → Bacteria945Open in IMG/M
3300002562|JGI25382J37095_10219620Not Available573Open in IMG/M
3300002908|JGI25382J43887_10023629Not Available3293Open in IMG/M
3300002908|JGI25382J43887_10089317All Organisms → cellular organisms → Bacteria1644Open in IMG/M
3300002908|JGI25382J43887_10217003Not Available907Open in IMG/M
3300002908|JGI25382J43887_10392071Not Available587Open in IMG/M
3300002912|JGI25386J43895_10043402Not Available1308Open in IMG/M
3300005167|Ga0066672_10091260All Organisms → cellular organisms → Bacteria1841Open in IMG/M
3300005174|Ga0066680_10058261Not Available2287Open in IMG/M
3300005174|Ga0066680_10058932Not Available2275Open in IMG/M
3300005174|Ga0066680_10060120Not Available2254Open in IMG/M
3300005174|Ga0066680_10063224Not Available2202Open in IMG/M
3300005174|Ga0066680_10132605All Organisms → cellular organisms → Bacteria1549Open in IMG/M
3300005178|Ga0066688_10772341Not Available604Open in IMG/M
3300005180|Ga0066685_10049953All Organisms → cellular organisms → Bacteria2683Open in IMG/M
3300005446|Ga0066686_10111790Not Available1771Open in IMG/M
3300005446|Ga0066686_10211564All Organisms → cellular organisms → Bacteria1301Open in IMG/M
3300005446|Ga0066686_10372020All Organisms → cellular organisms → Bacteria975Open in IMG/M
3300005447|Ga0066689_10143037All Organisms → cellular organisms → Bacteria1416Open in IMG/M
3300005447|Ga0066689_10292840Not Available1008Open in IMG/M
3300005447|Ga0066689_10551695All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium728Open in IMG/M
3300005467|Ga0070706_100887019All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria824Open in IMG/M
3300005467|Ga0070706_101361976Not Available650Open in IMG/M
3300005536|Ga0070697_100759942All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300005540|Ga0066697_10161807Not Available1324Open in IMG/M
3300005552|Ga0066701_10349886All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300005552|Ga0066701_10715474All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300005555|Ga0066692_10489259Not Available784Open in IMG/M
3300005555|Ga0066692_10926578All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300005556|Ga0066707_10170933All Organisms → cellular organisms → Bacteria1389Open in IMG/M
3300005558|Ga0066698_10785054All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300005568|Ga0066703_10681693All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300005575|Ga0066702_10678638All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium615Open in IMG/M
3300005575|Ga0066702_10907766All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300006034|Ga0066656_10236374Not Available1171Open in IMG/M
3300006796|Ga0066665_10429775All Organisms → cellular organisms → Bacteria1091Open in IMG/M
3300006796|Ga0066665_10561144All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium926Open in IMG/M
3300006796|Ga0066665_10833537All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium723Open in IMG/M
3300006797|Ga0066659_10178817All Organisms → cellular organisms → Bacteria1534Open in IMG/M
3300006800|Ga0066660_10019756Not Available3914Open in IMG/M
3300009012|Ga0066710_100177726Not Available3002Open in IMG/M
3300009012|Ga0066710_100829505All Organisms → cellular organisms → Bacteria1419Open in IMG/M
3300009012|Ga0066710_100993914Not Available1295Open in IMG/M
3300009012|Ga0066710_104878329Not Available502Open in IMG/M
3300009038|Ga0099829_11481666Not Available560Open in IMG/M
3300009089|Ga0099828_11750731Not Available546Open in IMG/M
3300009137|Ga0066709_103944547Not Available539Open in IMG/M
3300010303|Ga0134082_10092288All Organisms → cellular organisms → Bacteria → Nitrospirae1193Open in IMG/M
3300010336|Ga0134071_10160052Not Available1098Open in IMG/M
3300010336|Ga0134071_10523564All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300012189|Ga0137388_10773814Not Available890Open in IMG/M
3300012206|Ga0137380_10460781All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1123Open in IMG/M
3300012351|Ga0137386_10067853Not Available2486Open in IMG/M
3300012353|Ga0137367_11156605Not Available520Open in IMG/M
3300012532|Ga0137373_10320315Not Available1226Open in IMG/M
3300012685|Ga0137397_11190987Not Available549Open in IMG/M
3300012927|Ga0137416_11778216Not Available563Open in IMG/M
3300012927|Ga0137416_11877076Not Available548Open in IMG/M
3300012972|Ga0134077_10311799Not Available663Open in IMG/M
3300014154|Ga0134075_10185856Not Available892Open in IMG/M
3300014154|Ga0134075_10193354All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300014154|Ga0134075_10402531Not Available605Open in IMG/M
3300015358|Ga0134089_10025527All Organisms → cellular organisms → Bacteria2050Open in IMG/M
3300015358|Ga0134089_10286226Not Available681Open in IMG/M
3300015358|Ga0134089_10526762Not Available521Open in IMG/M
3300017656|Ga0134112_10336354Not Available613Open in IMG/M
3300018031|Ga0184634_10504476All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300018082|Ga0184639_10214278All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300018431|Ga0066655_10609259Not Available736Open in IMG/M
3300018468|Ga0066662_10598015Not Available1031Open in IMG/M
3300018468|Ga0066662_10880962All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria877Open in IMG/M
3300018468|Ga0066662_11005870Not Available826Open in IMG/M
3300019487|Ga0187893_10147613All Organisms → cellular organisms → Bacteria → Nitrospirae1922Open in IMG/M
3300026296|Ga0209235_1096206All Organisms → cellular organisms → Bacteria1286Open in IMG/M
3300026296|Ga0209235_1260688Not Available533Open in IMG/M
3300026297|Ga0209237_1090594Not Available1371Open in IMG/M
3300026298|Ga0209236_1014645Not Available4527Open in IMG/M
3300026298|Ga0209236_1053178Not Available2008Open in IMG/M
3300026298|Ga0209236_1137040Not Available1057Open in IMG/M
3300026309|Ga0209055_1176024Not Available667Open in IMG/M
3300026309|Ga0209055_1200538Not Available610Open in IMG/M
3300026328|Ga0209802_1035537Not Available2578Open in IMG/M
3300026328|Ga0209802_1071513All Organisms → cellular organisms → Bacteria1637Open in IMG/M
3300026328|Ga0209802_1264494All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300026332|Ga0209803_1348544Not Available513Open in IMG/M
3300026333|Ga0209158_1344368All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300026334|Ga0209377_1032593Not Available2480Open in IMG/M
3300026334|Ga0209377_1156067All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300026524|Ga0209690_1088935All Organisms → cellular organisms → Bacteria1286Open in IMG/M
3300026524|Ga0209690_1307990Not Available503Open in IMG/M
3300026528|Ga0209378_1208465Not Available637Open in IMG/M
3300026537|Ga0209157_1178254All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300026538|Ga0209056_10109065Not Available2232Open in IMG/M
3300026548|Ga0209161_10081455All Organisms → cellular organisms → Bacteria2002Open in IMG/M
3300027748|Ga0209689_1194934Not Available896Open in IMG/M
3300028536|Ga0137415_10318808Not Available1358Open in IMG/M
3300034165|Ga0364942_0023145Not Available1977Open in IMG/M
3300034177|Ga0364932_0185476Not Available790Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil43.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil26.67%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.48%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil10.48%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.86%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.90%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.95%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300034165Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17EnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25385J37094_1002113923300002558Grasslands SoilGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
JGI25385J37094_1018148523300002558Grasslands SoilFPHDYQEDLLQGWGMALGEDEVFSPAPWKGQESLVWMVATKGFSARSLLSIRQGKAQFEALFEGLAAIAQEPPRNQ*
JGI25384J37096_1002456023300002561Grasslands SoilMALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
JGI25384J37096_1013066623300002561Grasslands SoilPPAELERFPPAYQQGLLEGWGMALGEQELFSGMPWHGHESPLWIAATKGLSARSLVAIQEGKAQFEALFEGPDPTALEPSLRQ*
JGI25382J37095_1007360213300002562Grasslands SoilEGLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
JGI25382J37095_1011189623300002562Grasslands SoilYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
JGI25382J37095_1021962023300002562Grasslands SoilDDWGLAAELERFSHXYXXXLLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLASIRRGKAQFEALFEGPAPRALERPVSQ*
JGI25382J43887_1002362913300002908Grasslands SoilMALGEDELFSPYPWKGQESLSWMTATKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
JGI25382J43887_1008931723300002908Grasslands SoilDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
JGI25382J43887_1021700313300002908Grasslands SoilDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP*
JGI25382J43887_1039207113300002908Grasslands SoilYQEGLLEGWGMALGEDERFSPYPWKGQESQSWMVATKGFSARSLVAIRQGKAQFEALFEGPASSALKPTRSP*
JGI25386J43895_1004340213300002912Grasslands SoilGLLFDRLSITPWVPPAELERFPPAYQQGLLEGWGMALGEQELFSGMPWHGHESPLWIAATKGLSARSLVAIQEGKAQFEALFEGPDPTALEPSLRQ*
Ga0066672_1009126033300005167SoilEGLLEGWGMALGEDDLFSELPLHGQGSPLWVAATKGLSARSLVSIQQGKAQFDALFEGPASSALAPPRHAR*
Ga0066680_1005826113300005174SoilVYQEGLLEGWGMALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP*
Ga0066680_1005893223300005174SoilQEDLLEGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0066680_1006012013300005174SoilLIYMTPRVPSAELERFPQAYQQGLFEGWGMALGEDELFSLLPWKDQESLLWMAGTKGLSARSLVSIQQGKAQFDALFEGPAARALDPPLNQ*
Ga0066680_1006322423300005174SoilQEDLLEGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
Ga0066680_1013260513300005174SoilAELERFPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
Ga0066688_1077234113300005178SoilAYQEGLLEGWGMALGGEEEELYYPLPWKGQESFLWITATKGFSARSLVSIQQGKAQFEALFEEPASSALAPPFSP*
Ga0066685_1004995313300005180SoilAPWVLPAELERFPQVYQEGLLEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ*
Ga0066686_1011179023300005446SoilLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0066686_1021156423300005446SoilPAYQEGLLEGWGMALGEDEHFSLFPWKGHDSPFWMAGTKGFSARSLASIQRGKAQFEALFEGPAPSALELPVSQ*
Ga0066686_1037202023300005446SoilFPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
Ga0066689_1014303723300005447SoilEGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
Ga0066689_1029284013300005447SoilLLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLASIRRGKAQFEALFEGPAPRALERPVSQ*
Ga0066689_1055169513300005447SoilAELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLNQ*
Ga0070706_10088701913300005467Corn, Switchgrass And Miscanthus RhizosphereHWSRPAELERFPPAYREGLLEGWGMALEEWELFSPWPWKGHDSPYWTAWTKGLSARSLVSVHQGKAQFDALFAEPARGKPRDEK*
Ga0070706_10136197613300005467Corn, Switchgrass And Miscanthus RhizosphereGEDEVFSPHPWRGQESLSWIVSTKGFSARSLVSIRQGKAQFEALFEGPATHALERPVSQR
Ga0070697_10075994213300005536Corn, Switchgrass And Miscanthus RhizosphereAYQEGLLEGWGMALGNGELFSGFPWKGQESPLWMAGTKGFSARSLVSVQRGKAQFEALFEGPNSSALQPPVSQ*
Ga0066697_1016180713300005540SoilEGWGMGLGEFELFPPSPWHGAKSPYWIAATKGFPARSLLSIQRGKAQFEALFESPASSALEPPLHP*
Ga0066701_1034988613300005552SoilPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
Ga0066701_1071547413300005552SoilQEGLLEGWGMALSEDELFSRSPWKGQESPLWMAATKGFSSRSLASVQRGKAQFEALFEGASPSALDLPRPAP*
Ga0066692_1048925913300005555SoilLEGWGMALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP*
Ga0066692_1092657813300005555SoilIGELLFAHHRMTPFPPAELERFPAAYQEGLLEGWGMALSEVEHFSILPWKGHDNPFGAVWTRGLSARRLVSIQRGKAQFEALFESQAPSALEPPLRP*
Ga0066707_1017093323300005556SoilVLAAELERFPHDYQEDLLQGWGMALGEDEVFSPDPWKGQESLVWMVATKGFSARSLVSIRQGKAQFEALFEGPAPSALQPPVSQ*
Ga0066698_1078505413300005558SoilAELERFPQAYQEGLLEGWGMELAGEELFSPSLLTGHGSLLWLASTKGLSARSLAFVQQGKAQFEALFEGPAARALDPPLNQ*
Ga0066703_1068169313300005568SoilPAELERFTQAYQQSLLEGWGMALGESELFSQLPWKGHDSPFWMAGTKGLSARGLVSIQQGKAQLEALFESQAPSALEPPLRP*
Ga0066702_1067863813300005575SoilPPAELERFPQAYQEGLLEGWGMALGEEDLFSIFPWKGQESPYWTAWTKGLSARSLVSIQQGKAQFEALFKGPAPSALAPPLSP*
Ga0066702_1090776613300005575SoilAELERFPQAYQEGLLEGWGMALGEDDLFSELPLHGQGSPLWMAATKGLSARSLVSIQQGKAQFDALFEGPAPSALAPPRHAR*
Ga0066656_1023637423300006034SoilTANWLPPADLERFPHAYQPSLFEGWGMALGEVEVFSLLPWHGQASPLWMAATRGLTARSLVSIQRGRAQFDALFEGAAPSALEPARHTP*
Ga0066665_1042977523300006796SoilEGWGMALGEDELFSPLPWKGHDSLSWMAATKGFSARSLVSIQQGKAQFDALFEGPAARALDPPLNQ*
Ga0066665_1056114423300006796SoilATDNWLAPAELERVPQAYQPSLLEGWGMALGDEELYSPLPRTGHESLLWLASTNGFSARSFVSIRQGKAQFEALFEEPASSELEPPRQAL*
Ga0066665_1083353723300006796SoilERFPHAYQDGLMEGWGMALGEDERFSPLPWHGQESLLWRAATKGFSARSLVSIQQGKAQFDTLFESPAARALEPPLNQ*
Ga0066659_1017881723300006797SoilELLFMHLSNAPWVLPAELERFPQVYQEGLLEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ*
Ga0066660_1001975613300006800SoilELERLPQAYQEGLWEGWGMALGEEEFCSPLPWKGQQNLVWMAATKGLSARSLVSIQQGKAQFDALFEGPAPSALAPPRHAR*
Ga0066710_10017772633300009012Grasslands SoilLLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLVSIRQGKAQLEALFEGPAPRALERPVSQ
Ga0066710_10082950513300009012Grasslands SoilEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ
Ga0066710_10099391423300009012Grasslands SoilMEPLVPPAELERFPQAYQPSLLVGLGMALGEVELYSPFPLIGHETLLWMAATKGVSAISLASIQQGKAQFEALFEGPASSPLEPPQRP
Ga0066710_10487832923300009012Grasslands SoilGQVLFASLSADDWDLAAELERFPHAYQDGLMEGWGMALGEDALFPPYPWEGHERLLWRAATKGFSARSLVSIRQGKAQFEALFEGPATHALAPPLRP
Ga0099829_1148166613300009038Vadose Zone SoilQGVGELLFHHFSGIPWVQAAELERFPHAYQESLLEGWGMALGELEFFSLLPWTGHESLSWMAATKGFSARSLVSIQRGKAQFEALFEEPAPSELEPPLRQ*
Ga0099828_1175073123300009089Vadose Zone SoilLERFSHVYQEGLLEGWGMALGERDYFSPFPRQGSESLYWMASTKVFSPRSLVSIQQGKAQFDALFEGPAPSALQPPLSR*
Ga0066709_10394454713300009137Grasslands SoilHAYQEGLLEGWGMALGEVEHFSILPWKGHDNPFSAVWTRGLSARSLVSVQQGKAQFDTLFEGPASSALKPTRSP*
Ga0134082_1009228823300010303Grasslands SoilEGLGVEIGEFELFSGLPSTDHESLLWMASTKGFSARSLASMQQGKAQFDALFEGPASGALEPSRNAR*
Ga0134071_1016005213300010336Grasslands SoilLFEGWGMALGEDELFSPLPWKGHDSLSWMAATKGFSARSLVSIQQGKAQFDALFEGPASRAVQPLRQAP*
Ga0134071_1052356423300010336Grasslands SoilSDWVRPAELERFPPAYQESLLEGWGMALGEDELFSLYSWKGEDSPVWMAATKGFSTKSLVSVQRGKAQFEALFEGPASRSLEPPPRQ*
Ga0137388_1077381423300012189Vadose Zone SoilMTPWVLAAELERFSDAYQEGLLEGWGMILGEDGLFVPLPWKAHESPSWTAWKKGFSARSLVSIQRGKAQFETLFEGAAPSALDAPLSH*
Ga0137380_1046078123300012206Vadose Zone SoilVPPAYQPSLLEGWGMALGEDEIYSLFPGKGQESPYWTVWTKGFSAKSLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137386_1006785313300012351Vadose Zone SoilELLFDNRFIDSQWVVPAELERVPPAYQEGLLEGWGMALGEDEIYSLFPWKGQESPYWTVWTKGFSAKSLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137367_1115660523300012353Vadose Zone SoilGELLFDNRFIDSQWVVPAELERVPPAYQPSLLEGWGMALGEDEIYSLFPWKGQESPYWTVWTKGFSAKGLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137373_1032031523300012532Vadose Zone SoilMALGEDEIYSLFPGKGQESPYWTVWTKGFSAKSLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137397_1119098713300012685Vadose Zone SoilQGVGELLFDYLKYTPWIPLAELARLPHAYQEGFLEGWGMALGEYDLLSRIPWHGRASPYWTAWTKGLSARSLMAVQQGMAQFEALFTGPAPSALKPPLRR*
Ga0137416_1177821623300012927Vadose Zone SoilPAELERVLPAYQEGLLEGWGMALGEDELFSLLPSTGQESVSWIAATKGFSPSSLVSIQRGKAQFEALFEGAAASTLKSPLSP*
Ga0137416_1187707613300012927Vadose Zone SoilQEGPLEGWGMDLGEVELFSQLSWKGDDSPYWMALTKGLSPRSLVSIQQGKSQFDALFARPPSSALDPPLSQ*
Ga0134077_1031179913300012972Grasslands SoilLFATLSADDWVLAAELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0134075_1018585633300014154Grasslands SoilYQESLLEGWGIQLCKDDLFSPFPWKGHDSPFWTAWTKGLSARSLVSIEQGRAQFEALFEEPTSRALKPPRQAP*
Ga0134075_1019335413300014154Grasslands SoilYQEGLLEGWGMALGEDEHFSLFPWKGHDSPFWMAGTKGFSARSLASIQRGKAQFEALFEGPAPSALELPVSQ*
Ga0134075_1040253113300014154Grasslands SoilPFRPAELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0134089_1002552733300015358Grasslands SoilMHLRNTPWVVPGEVERFPHAYQEGLLEGWGMALGEDKVFSLYPWKGEDSPVWRAARKGFSARSLVSVQHGMAQFETLFEGPASSAPEPPRSR*
Ga0134089_1028622623300015358Grasslands SoilGLLEGWGMALGEAGVFSLYPWKGKDSPVWMVSTKGFSTRSLVSIQQGKAQFEALFEGPASKSLVPSPRP*
Ga0134089_1052676223300015358Grasslands SoilVLPAELERFPQVYQEGLMEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFKGPAPSALQPPVSQ*
Ga0134112_1033635423300017656Grasslands SoilRPAELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP
Ga0184634_1050447623300018031Groundwater SedimentPGVAPAELERFPQAYQEGLLEGWGTAQGEFELSPVLPWLGPESPYWAAWTKGFSARSLVSIQRGKAQFEALFEGPPSSAPEPPRRP
Ga0184640_1007871933300018074Groundwater SedimentWGMALGEAELFSPFPWKHQASPFWMAATKGVSAKSLVFVQQGMAQFAALFEGPAISALEPPRQAP
Ga0184639_1021427823300018082Groundwater SedimentFAHLMYTPWVLAAELERFPQAYQEGLLEGWGMALGEFDHFSAFPWHGHESPFWTAWTKGFSARSLVSIQQGEAQFDALFEGAASSAPGPPRRP
Ga0066655_1060925913300018431Grasslands SoilLGEDALFSQYPWEGHERLLWRAATKGFSARSLASIRRGKAQFEALFEGPAPRALERPVSQ
Ga0066662_1059801523300018468Grasslands SoilPAELERFPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP
Ga0066662_1088096223300018468Grasslands SoilFPPAYQEDLFEGWGVAQGEFELAPVFPWLGPDSPYWASLMKGFSARSLASVQQGKAQFEALFERAAPSALKPPLHP
Ga0066662_1100587023300018468Grasslands SoilSFDNWVLDAELEHFPYAYQEGLLQGWGMALGEDALFSLYPWEGHERLLWRAATKGFSARSLMSIRQGKAQFDALFEGAAERALEPPFNER
Ga0187893_1014761313300019487Microbial Mat On RocksIDTPRVSATELERFSHDYQRGLLEGWGMALGEFDYYSNFLGHGPESPLWEASTKGLSARSLASVEQGKAQFAALFDGPAASAMKPPPHAR
Ga0209235_109620613300026296Grasslands SoilDEVFSPAPWKGQESLVWMVATKGFSARSLLSIRQGKAQFEALFEGLAAIAQEPPRNQ
Ga0209235_126068823300026296Grasslands SoilFLITSHWVPPAELERFPPAYQEGLLEGWGMALGEDEHFSLFPWKGHDSPFWMAGTKGFSARSLASIQRGKAQFEALFEGPAPSALELPVSQ
Ga0209237_109059413300026297Grasslands SoilAELERFPPAYQEGLLEGWGMALGEYELLSPLPWKGHDSPLWMAATKGFSARSLVSIRQGKAQFDALFEGLAPRALEHPLSQ
Ga0209236_101464533300026298Grasslands SoilGEELFSPSLLTGHESLLWLASTKGLSARSLAFVQQGKAQFEALFEGPAARALDPPLNQ
Ga0209236_105317833300026298Grasslands SoilQEDLLEGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP
Ga0209236_111248313300026298Grasslands SoilQELFSGMPWHGHESPLWIAATKGLSARSLVAIQEGKAQFEALFEGPDPTALEPSLRQ
Ga0209236_113704023300026298Grasslands SoilGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP
Ga0209055_117602413300026309SoilPWVLPAELERFPQVYQEGLMEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ
Ga0209055_120053813300026309SoilELERFPPAYQEGLLEGWGMALGEDALFSPYPWEGHEKLLWRAATKGFTARSLVSIQQGKAQFEALFKGAAARALEPPLNER
Ga0209802_103553733300026328SoilSLSADDWGLAAELERFPHPYQEGLLEGWGMALGEDELFSPLPWKGHDSPFWMTVTKGLSARSLMAIQRGKAQFEALFESPAPSALEPRLLQ
Ga0209802_107151323300026328SoilEGLLEGWGFALSERELFSPLPWNGQESLLWRAATKGFSARSRASIQRGKAQFEALFEGPTPSAVEPPLNQ
Ga0209802_126449423300026328SoilLERFPQVYQEGLLEGWGMGLGEFELFPPSPWHGAKSPYWIAATKGFSARSLVSIQQGKAQFEALFEGPDPTALEPSLRQ
Ga0209803_134854423300026332SoilGFALSERELFSPLPWNGQESLLWRAATKGFSARSLVSVQQGKAQFDTLFEGPASSALGPPPRR
Ga0209158_134436823300026333SoilFSLYPWKGKDSPVWMVSTKGFSTRSLVSIQQGKAQFEALFEGPAASALEPPRQAQ
Ga0209377_103259323300026334SoilMALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP
Ga0209377_115606713300026334SoilLGEVELYSPFPLTGHETFSWKAATKGFSVRSLVFIQQGKAQFEALFEGTAPSALKPLLSQ
Ga0209690_108893523300026524SoilYQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP
Ga0209690_130799013300026524SoilQGVGELLFMHLSNTPWVLPAELERFPHAYQEGLLEGWGMELGEFELVSRFPWHGQESPLWVASTKGFSARSLVTIQQGKAQFDTLFEGPAARALEPPPRP
Ga0209378_120846513300026528SoilLFIHLLNTPWVPPAELERFPHAYQEGLLEGWGMALGEVEHFSILPWKGHDNPFSAVWTRGLSARSLVSVQQGKAQFDTLFEGPASSALKPTRSP
Ga0209157_117825423300026537SoilFPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP
Ga0209056_1010906513300026538SoilNWVPPAELERFPRAYQQGLLEGWGMALGEDELFSPVPWKGQESPLWIAKTKGLSAMSLSYIQQGKAQFEALFESPDPTALEVPLSQ
Ga0209161_1008145513300026548SoilPWVLPAELERFPQVYQEGLLEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ
Ga0209689_119493423300027748SoilTLSADDWVLAAELERFPPAYQEGLLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLVSIRQGKAQLEALFEGPAPRALERPVSQ
Ga0137415_1031880813300028536Vadose Zone SoilNHWVAPAELERVPPAYQEGLLEGWGMALGEFDHFSDFPWHGQGSPFWAAWTKGLSAGGLVSVEQGKAQFEALFEGADSSAPEPPRQAP
Ga0364942_0023145_2_2863300034165SedimentLFTYPFTSYWVPPAELERFPPAYQEGLLEGWGMALGEFELFSGLPWKGPESPFGTAWTKGLSARSLVSVQQGKAQFKALFEGPASNALAPPLSP
Ga0364932_0185476_207_4103300034177SedimentMEGWGMALGEYEFFSKLPRKGHESPLWMAATKGLSARSLVSIQRGRAQFKALFEGPALSAPGPPLHP

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.