Metagenome / Metatranscriptome Family F095200

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095200
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	53 residues
Representative Sequence	VDLLSLNRHEAKIQIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR
Number of Associated Samples	87
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.048 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (53.333 % of family members)
Environment Ontology (ENVO)	Unclassified (67.619 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (59.048 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.35% β-sheet: 0.00% Coil/Unstructured: 87.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01066	CDP-OH_P_transf	89.52
PF00308	Bac_DnaA	3.81
PF00300	His_Phos_1	2.86
PF13090	PP_kinase_C	0.95
PF10103	Zincin_2	0.95
PF04932	Wzy_C	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	89.52
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	89.52
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	89.52
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	3.81
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	3.81
COG3307	O-antigen ligase	Cell wall/membrane/envelope biogenesis [M]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	38.10 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.95 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	28.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	26.67 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Unclassified	root	N/A	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101762728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300005332\|Ga0066388_105425810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	646	Open in IMG/M
3300005536\|Ga0070697_100222131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1610	Open in IMG/M
3300005557\|Ga0066704_10849167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	566	Open in IMG/M
3300005559\|Ga0066700_10207386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1356	Open in IMG/M
3300006797\|Ga0066659_10323672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1185	Open in IMG/M
3300010046\|Ga0126384_11511980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300010358\|Ga0126370_11487872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300010362\|Ga0126377_12209800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300010376\|Ga0126381_103242953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300010376\|Ga0126381_103792212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	591	Open in IMG/M
3300010376\|Ga0126381_104529853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300010398\|Ga0126383_13300583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300012208\|Ga0137376_10740332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300012361\|Ga0137360_10045894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3123	Open in IMG/M
3300012362\|Ga0137361_11137056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300012917\|Ga0137395_11058024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300012925\|Ga0137419_10178706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1555	Open in IMG/M
3300016270\|Ga0182036_10375838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1101	Open in IMG/M
3300016270\|Ga0182036_10574327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	901	Open in IMG/M
3300016319\|Ga0182033_11986472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300016357\|Ga0182032_10225643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1442	Open in IMG/M
3300016371\|Ga0182034_11508519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300016404\|Ga0182037_10639239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	906	Open in IMG/M
3300016422\|Ga0182039_10557320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	997	Open in IMG/M
3300016422\|Ga0182039_11634685	Not Available	588	Open in IMG/M
3300016445\|Ga0182038_10326948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1262	Open in IMG/M
3300020583\|Ga0210401_11287494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300021372\|Ga0213877_10068971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1041	Open in IMG/M
3300021439\|Ga0213879_10165108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300021476\|Ga0187846_10036449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2210	Open in IMG/M
3300025910\|Ga0207684_10414409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1158	Open in IMG/M
3300027603\|Ga0209331_1035616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1274	Open in IMG/M
3300027748\|Ga0209689_1227251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300027824\|Ga0209040_10479098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300030969\|Ga0075394_11564550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	727	Open in IMG/M
3300031057\|Ga0170834_108151108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300031122\|Ga0170822_10302847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300031231\|Ga0170824_114699837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300031469\|Ga0170819_16972562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M
3300031474\|Ga0170818_101364706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300031545\|Ga0318541_10539998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300031564\|Ga0318573_10046445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2104	Open in IMG/M
3300031573\|Ga0310915_10697967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300031640\|Ga0318555_10096566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1553	Open in IMG/M
3300031668\|Ga0318542_10008396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3790	Open in IMG/M
3300031681\|Ga0318572_10266962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300031681\|Ga0318572_10745950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300031682\|Ga0318560_10100152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1498	Open in IMG/M
3300031713\|Ga0318496_10751198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300031719\|Ga0306917_11301251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300031724\|Ga0318500_10031609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2128	Open in IMG/M
3300031724\|Ga0318500_10136179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1146	Open in IMG/M
3300031747\|Ga0318502_10169741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1252	Open in IMG/M
3300031748\|Ga0318492_10103251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1403	Open in IMG/M
3300031768\|Ga0318509_10678579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300031770\|Ga0318521_10070585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1860	Open in IMG/M
3300031770\|Ga0318521_10415328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	803	Open in IMG/M
3300031778\|Ga0318498_10355012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300031781\|Ga0318547_10204866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1179	Open in IMG/M
3300031781\|Ga0318547_11011467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300031782\|Ga0318552_10702132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300031792\|Ga0318529_10028929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2281	Open in IMG/M
3300031792\|Ga0318529_10220210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	882	Open in IMG/M
3300031795\|Ga0318557_10591761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300031796\|Ga0318576_10361723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	686	Open in IMG/M
3300031796\|Ga0318576_10403299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300031805\|Ga0318497_10273858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300031831\|Ga0318564_10351841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300031833\|Ga0310917_10884340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300031833\|Ga0310917_11000016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300031879\|Ga0306919_10230723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1387	Open in IMG/M
3300031879\|Ga0306919_10310480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1198	Open in IMG/M
3300031880\|Ga0318544_10068395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1308	Open in IMG/M
3300031880\|Ga0318544_10374989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300031897\|Ga0318520_10477277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300031897\|Ga0318520_10612595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300031910\|Ga0306923_11459063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300031941\|Ga0310912_10095743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2178	Open in IMG/M
3300031942\|Ga0310916_10047416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3266	Open in IMG/M
3300031942\|Ga0310916_11186900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300031945\|Ga0310913_10031425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3383	Open in IMG/M
3300031946\|Ga0310910_11551064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300031947\|Ga0310909_10277901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1401	Open in IMG/M
3300031947\|Ga0310909_10571593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300031954\|Ga0306926_10316633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1931	Open in IMG/M
3300031954\|Ga0306926_11786808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300031959\|Ga0318530_10090840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1205	Open in IMG/M
3300032001\|Ga0306922_10627953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1136	Open in IMG/M
3300032041\|Ga0318549_10064594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1541	Open in IMG/M
3300032043\|Ga0318556_10376238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	743	Open in IMG/M
3300032054\|Ga0318570_10133002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1105	Open in IMG/M
3300032055\|Ga0318575_10233590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	926	Open in IMG/M
3300032060\|Ga0318505_10039871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1966	Open in IMG/M
3300032063\|Ga0318504_10044259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1842	Open in IMG/M
3300032066\|Ga0318514_10578608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M
3300032067\|Ga0318524_10146111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1194	Open in IMG/M
3300032068\|Ga0318553_10141043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1245	Open in IMG/M
3300032076\|Ga0306924_12423270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300032091\|Ga0318577_10338427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300032091\|Ga0318577_10377897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300032180\|Ga0307471_101790173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300032205\|Ga0307472_100022476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3488	Open in IMG/M
3300033289\|Ga0310914_10302915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1441	Open in IMG/M
3300033290\|Ga0318519_10293389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.05%
Aquatic	Environmental → Aquatic	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.10%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Cave	Environmental → Terrestrial → Cave	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.33%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.95%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	76.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.95%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	53.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.81%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1017627282	3300002245	Forest Soil	LSRQEAKIQIRYTGSADQLKSSLAEVDLGLGGGDPIWVLQVSGTASSR*
Ga0066388_1054258101	3300005332	Tropical Forest Soil	DRLASVMAIRKVDLLSLNRQEAKVQIKYIGSSEQLKSSLAEVDLDLGGGDPLWRLQRSSATSSR*
Ga0070697_1002221311	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LLSLSRQEAKIQIRYVGSAEQLKSSLADVDLGLGGTDPMWQLQISSATGSR*
Ga0066704_108491671	3300005557	Soil	MVRDRLASAAAVRRVDLLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPMWQLQISSATGSR*
Ga0066700_102073861	3300005559	Soil	DWVMVRDRLASAAAVRRVDLLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPMWQLQISSATGSR*
Ga0066659_103236723	3300006797	Soil	SRQEAKIQIRYVGSADQLKSSLAEVDLGLGGGDPVWVLQVAGTGGSR*
Ga0126384_115119801	3300010046	Tropical Forest Soil	QIKYVGGADQLKSSLAGVDLGLAGTDPEWRLQLSGMAGVH*
Ga0126370_114878722	3300010358	Tropical Forest Soil	SLNRHEAKIQINYVGGPDQLKSSLAGVDLGLDGTDPIWRLQLSGAAGPH*
Ga0126377_122098002	3300010362	Tropical Forest Soil	LSLNRHEAKIQIKYIGGSDELKSSLAAVDLGLDGTDPAWRLQLSGTRDSR*
Ga0126381_1032429531	3300010376	Tropical Forest Soil	NRHEAKIQIRYIGGSDQLKSSLAAVDLGLDGTDPVWQLQLSGGR*
Ga0126381_1037922122	3300010376	Tropical Forest Soil	AKIQIKYVGSPEQLRSSLAEVDLGLDGTDPLWRLQLSGATGAH*
Ga0126381_1045298532	3300010376	Tropical Forest Soil	VDLLSLNRHEAKIQIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR*
Ga0126383_133005832	3300010398	Tropical Forest Soil	DRLASVPVIRKVDLLSLSRHEAKIQIRYIGGSDQLKSSLAAVDLGLDGTDPVWQLQLSGGR*
Ga0137376_107403321	3300012208	Vadose Zone Soil	SLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPMWQLQISSATGSR*
Ga0137360_100458941	3300012361	Vadose Zone Soil	VDLLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPVWQLQISSAAGSR*
Ga0137361_111370562	3300012362	Vadose Zone Soil	DLLSLSRQEAKIQIRYIGSADQLKSSLAEVDLGLGGGDPIWVLQVSGTASSR*
Ga0137395_110580242	3300012917	Vadose Zone Soil	SDWVMVRDRLASAAAVRRVDLLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPMWQLQISSATGSR*
Ga0137419_101787061	3300012925	Vadose Zone Soil	RQEAKIQIRYVGSAEQLKSSLAEVDLGLGGADPVWQLQISSATGSR*
Ga0182036_103758381	3300016270	Soil	DLLSLNRHEAKIQIKYVGSSDQLRSGLAGVDLGLDGTGPVWRLQLSGTAGAQ
Ga0182036_105743272	3300016270	Soil	LLSLNRHEAKIQIRYVGGSDQLKSSLAAVDLGLDGADPVWRLQLSGIAGSR
Ga0182033_119864721	3300016319	Soil	AIRKVDLLSLNRHEAKIQIKYVGSSEQLRSSLAEVDLGLDGTDPIWRLQLSGATGAH
Ga0182032_102256431	3300016357	Soil	RLASVPTIRKVDLLSLNRHEAKIQIKYVGGSDELKSSLAAVDLGLDGTDPAWRLQLSGTRDSR
Ga0182034_115085191	3300016371	Soil	NRHEAKLQIMYFGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0182037_106392391	3300016404	Soil	RDRLTTVPAIRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAAVDLGLDGTDPV
Ga0182039_105573203	3300016422	Soil	REAKIQIKYVGGPDQLRSSLAGVDLGLDGNDPIWRLQLSGATGPR
Ga0182039_116346851	3300016422	Soil	QIRYVGGTDQLKSSLGEVDLGLNGTDPAWRLQLSGATGAH
Ga0182038_103269483	3300016445	Soil	PAIRKVDLLSLNRHEVKLQIKYVGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0210401_112874942	3300020583	Soil	RRVDLLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPVWQLQISSATGSR
Ga0213877_100689711	3300021372	Bulk Soil	DLLSLNRHEAKIQIKYVGSFDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0213879_101651082	3300021439	Bulk Soil	QEARIQLRYVGSSDQLRSSLAEVDLDLGGGDPVWRLQRSGPPSLH
Ga0187846_100364494	3300021476	Biofilm	VQVRDRLASVSAVRKVDLLSLNRQEAKIQVRYVGSPDQLRSSLAEVHLDLGGGDPVWRLQRSGAASSR
Ga0207684_104144091	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ASAAAVRRIDLLSLSRQEAKIQIRYVGSAEQLKSSLADVDLGLGGTDPMWQLQISSATGS
Ga0209331_10356161	3300027603	Forest Soil	SRQEAKIQIRYTGSADQLKSSLAEVDLGLGGGDPIWVLQVSGTASSR
Ga0209689_12272512	3300027748	Soil	DWVMVRDRLASAAAVRRVDLLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPMWQLQISSATGSR
Ga0209040_104790981	3300027824	Bog Forest Soil	QIKYVGSPEQLRASLAEVDLDLGGSDPLWRLQRSAATNSP
Ga0075394_115645502	3300030969	Soil	EWVSVRDRLASVPTIRKVDLLSLNRHEAKIQIKYVGGSDELKSSLAAVDLGLDGTDPVWRLQLSGTTGGR
Ga0170834_1081511082	3300031057	Forest Soil	LNRHEAKIQIKYVGGSDELKSSLAAVDLGLDGIDPVWRLRLSGTGDSR
Ga0170822_103028472	3300031122	Forest Soil	VMVRDRLASAAAVRRVDLLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPMWQLQISSAAGSR
Ga0170824_1146998372	3300031231	Forest Soil	LSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGTDPLWQLRISSATGSR
Ga0170819_169725621	3300031469	Forest Soil	DLLSLNRHEAKIQIKYVGGSDQLKSSLAAVDLGLDGTDPVWRLQLSGTAGSR
Ga0170818_1013647062	3300031474	Forest Soil	TTVPAIRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAAVDLGLDGADPVWRLQLSGTAGS
Ga0318541_105399982	3300031545	Soil	RDRLASVGAIRKVDLLSLNRREAKIQIKYVGGPDQLRSSLAGVDLGLDGNDPIWRLQLSGATGPR
Ga0318573_100464454	3300031564	Soil	LNRHEAKIQIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0310915_106979672	3300031573	Soil	IQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0318555_100965661	3300031640	Soil	IQIKYVGSSDQLRSGLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0318542_100083963	3300031668	Soil	VRVRDRLASVGAIRKVDLLSLNRREAKIQIKYVGGPDQLRSSLAGVDLGLDGNDPIWRLQLSGATGPR
Ga0318572_102669623	3300031681	Soil	QIKYVGGPDQLRSSLAGVDLGLDGADPEWRLQLSGVAGTR
Ga0318572_107459502	3300031681	Soil	LSLNRHEAKIQIKYVGGADQLKSSLAGIDLGLAGTDPEWRLQLSGMAGAH
Ga0318560_101001523	3300031682	Soil	DRLASVPAIRKVDLLSLNRHEAKIQIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAH
Ga0318496_107511981	3300031713	Soil	VDLLSLNRREAKIQIKYVGGPDQLRSSLAGVDLGLDGNDPIWRLQLSGATGPR
Ga0306917_113012511	3300031719	Soil	PAIRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0318500_100316091	3300031724	Soil	AVRRVDLLSLNRHEAKIRIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0318500_101361791	3300031724	Soil	RDRLASVPAIRKVDLISLNRHEAKIQIKYVGGPDQLRSSLAGVDLGLDGADPEWRLQLSGVAGTR
Ga0318502_101697411	3300031747	Soil	VDLVSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVAGPH
Ga0318492_101032513	3300031748	Soil	EAKIQIKYVGSSEQLRSSLAEVDLGVDGTDPIWRLQLSGATGVH
Ga0318509_106785792	3300031768	Soil	YVGSSDQLRSGLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0318521_100705854	3300031770	Soil	VRLRDRLASVPAIRKVDLLSLNRHEAKIQIKYVGSSEQLRSSLAEVDLGVDGTDPIWRLQLSGATGVH
Ga0318521_104153281	3300031770	Soil	IGEWVRVRDRLASVPAIRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGADPVWRLQLSGVTGPR
Ga0318498_103550122	3300031778	Soil	LVSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVAGPH
Ga0318547_102048661	3300031781	Soil	KYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAH
Ga0318547_110114672	3300031781	Soil	RLASVPAIRKVDLLSLNRHEAKIQIKYVGGADQLKSSLAGVDLGLAGTDPEWRLQLSGMAGAH
Ga0318552_107021322	3300031782	Soil	HEAKIQIKYVGSSEQLRSSLAEVDLGVDGTDPIWRLQLSGAMGVH
Ga0318529_100289294	3300031792	Soil	VRDRLASVPAIRKVDLLSLNRHEAKIQIKYVGSSEQLRSSLAEVDLGVDGTDPIWRLQLSGAMGVH
Ga0318529_102202102	3300031792	Soil	KVDLLSLNRHEVKLQIKYVGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0318557_105917612	3300031795	Soil	IKYFGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0318576_103617231	3300031796	Soil	QIKYFGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0318576_104032992	3300031796	Soil	RHEAKIQIKYVGGPDQLRSSLAGVDLGLDGADPEWRLQLSGVAGTR
Ga0318497_102738582	3300031805	Soil	VDLLSLNRHEAKLQIKYFGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0318564_103518411	3300031831	Soil	LNRHEAKIRIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0310917_108843401	3300031833	Soil	LLSLNRHEAKIQIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAH
Ga0310917_110000162	3300031833	Soil	TTVPAIRKVDLLSLNRHEAKIQIRYVGGSDQLKSSLAGVDLGLDGADPVWRLQLSGIAGS
Ga0306919_102307233	3300031879	Soil	AKIQIKYVGGPDQLRSSLAGVDLGLDGADPEWRLQLSGVAGTR
Ga0306919_103104803	3300031879	Soil	AKIQIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0318544_100683951	3300031880	Soil	PAIRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGADPVWRLQLSGVTGPR
Ga0318544_103749891	3300031880	Soil	LNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVAGPH
Ga0318520_104772772	3300031897	Soil	YVGGPDQLSSSLAGVDLGLDGADPEWRLQLSGVAGTR
Ga0318520_106125952	3300031897	Soil	VDLLSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0306923_114590631	3300031910	Soil	IQIKYVGSSDQLRSGLAGVDLGLDGTDPVWRLQLSGTAGAQ
Ga0310912_100957431	3300031941	Soil	HEVKLQIKYVGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0310916_100474165	3300031942	Soil	GDWVRIRDRLALVPAIRKVDLLSLNRHEAKLQIKYFGGPDQLRSGLAGVDLGLDGADPEWRLQLSGVAGAR
Ga0310916_111869002	3300031942	Soil	VRDRLASVPTIRKVDLLSLNRHEAKIQIKYVGGSDELKSSLAAVDLGLDGTDPAWRLQLSGTRDSR
Ga0310913_100314255	3300031945	Soil	HEAKIQIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAH
Ga0310910_115510641	3300031946	Soil	NRHEAKIQIKYVGSSDQLRSGLAGVDLGLDGTDPVWRLQLSGTAGAQ
Ga0310909_102779011	3300031947	Soil	IRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0310909_105715932	3300031947	Soil	DRLASVPTIRKVDLLSLNRHEAKIQIKYVGGSDELKSSLAAVDLGLDGTDPAWRLQLSGTRDSR
Ga0306926_103166334	3300031954	Soil	DLLSLNRHEAKIQIKYVGSSEQLRSSLAEVDLGLDGTDPIWRLQLSGAAGAH
Ga0306926_117868081	3300031954	Soil	EAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0318530_100908403	3300031959	Soil	RHEAKIRIKYVGSSDQLRSSLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0306922_106279533	3300032001	Soil	LASVPAIRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0318549_100645941	3300032041	Soil	IGEWVRVRDRLATVPAIRRVDLLSFNRHEARIQIKYVGSSDQLRSGLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0318556_103762382	3300032043	Soil	NRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0318570_101330021	3300032054	Soil	IKYVGSSDQLRSGLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0318575_102335901	3300032055	Soil	VRDRLATVPAIRRVDLLSFNRHEARIQIKYVGSSDQLRSGLAEVDLGLDGTDPIWRLQLSGATGAR
Ga0318505_100398711	3300032060	Soil	ATVPAIRRVDLLSFNRHEARIQIKYVGSSDQLRSGLAEVDLGLDGTDPIWRLQLSGATGA
Ga0318504_100442594	3300032063	Soil	DDDRLASVPAIRKVDLLSLNRHEAKIQIKYVGSSEQLRSSLAEVDLGVDGTDPIWRLQLSGATGVH
Ga0318514_105786082	3300032066	Soil	GGPVQLRSSLAGVDLGLDGNDPIWRLQLSGATGPR
Ga0318524_101461111	3300032067	Soil	RHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVAGPH
Ga0318553_101410431	3300032068	Soil	QAVRRVDLLSLNRHEAKIQIKYVGSSDQLRSSLAGVDLGLDGTDPIWRLQLSGATGAR
Ga0306924_124232701	3300032076	Soil	AIRKVDLLSLNRHEAKIQIKYVGSSEQLRSSLAEVDLGVDGTDPIWRLQLSGAMGVH
Ga0318577_103384272	3300032091	Soil	RDRLASVPAIRKVDLLSLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGTDPVWRLQLSGVTGPR
Ga0318577_103778972	3300032091	Soil	KVDLISLNRHEAKIQIKYVGGPDQLRSSLAGVDLGLDGADPEWRLQLSGVAGTR
Ga0307471_1017901732	3300032180	Hardwood Forest Soil	LLSLSRQEAKIQIRYVGSAEQLKSSLAEVDLGLGGSDPVWQLQISSATGSR
Ga0307472_1000224761	3300032205	Hardwood Forest Soil	PTIRKVDLLSLNRHEAKIQIRYVGGSDQLKSSLAAVDLGLDGTDPVWRLQLSGTTGGR
Ga0310914_103029153	3300033289	Soil	SLNRHEAKIQIKYVGGSDQLKSSLAGVDLGLDGADPVWRLQLSGVTGPR
Ga0318519_102933892	3300033290	Soil	LATVPAIRRVDLLSFNRHEARIQIKYVGSSDQLRSGLAEVDLGLDGTDPIWRLQLSGATGAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095200

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences