Metagenome Family F095075

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095075
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	95 residues
Representative Sequence	MNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE
Number of Associated Samples	72
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.33 %
% of genes near scaffold ends (potentially truncated)	34.29 %
% of genes from short scaffolds (< 2000 bps)	83.81 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (26.667 % of family members)
Environment Ontology (ENVO)	Unclassified (51.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.810 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 85.42% β-sheet: 0.00% Coil/Unstructured: 14.58%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF03330	DPBB_1	10.48
PF13847	Methyltransf_31	9.52
PF01523	PmbA_TldD	8.57
PF02353	CMAS	2.86
PF08240	ADH_N	2.86
PF04255	DUF433	1.90
PF13489	Methyltransf_23	1.90
PF13649	Methyltransf_25	1.90
PF00903	Glyoxalase	1.90
PF01676	Metalloenzyme	1.90
PF00248	Aldo_ket_red	0.95
PF03091	CutA1	0.95
PF02911	Formyl_trans_C	0.95
PF03793	PASTA	0.95
PF13602	ADH_zinc_N_2	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	8.57
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	2.86
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	2.86
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	2.86
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.90
COG0223	Methionyl-tRNA formyltransferase	Translation, ribosomal structure and biogenesis [J]	0.95
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
All Organisms	root	All Organisms	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
cellular organisms	root	All Organisms → cellular organisms	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.38 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.38 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.76 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.38 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.76 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.38 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.76 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16889397	Not Available	1227	Open in IMG/M
2228664022\|INPgaii200_c1139332	Not Available	2278	Open in IMG/M
2228664022\|INPgaii200_c1139658	Not Available	680	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101968139	Not Available	1394	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101968827	Not Available	667	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101970244	Not Available	1177	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101970930	Not Available	1184	Open in IMG/M
3300000559\|F14TC_103952883	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2048	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1025482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300000955\|JGI1027J12803_100026734	Not Available	567	Open in IMG/M
3300000955\|JGI1027J12803_106820100	Not Available	734	Open in IMG/M
3300004114\|Ga0062593_100000100	All Organisms → cellular organisms → Bacteria	27646	Open in IMG/M
3300004268\|Ga0066398_10131082	Not Available	612	Open in IMG/M
3300004479\|Ga0062595_100468457	Not Available	933	Open in IMG/M
3300004633\|Ga0066395_10013545	All Organisms → cellular organisms → Bacteria	3083	Open in IMG/M
3300005295\|Ga0065707_10011685	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300005332\|Ga0066388_100030733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5037	Open in IMG/M
3300005332\|Ga0066388_100291158	All Organisms → cellular organisms → Bacteria	2277	Open in IMG/M
3300005332\|Ga0066388_100330869	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2169	Open in IMG/M
3300005332\|Ga0066388_100437774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1950	Open in IMG/M
3300005332\|Ga0066388_101099550	Not Available	1346	Open in IMG/M
3300005332\|Ga0066388_102143970	All Organisms → cellular organisms → Bacteria → Acidobacteria	1007	Open in IMG/M
3300005332\|Ga0066388_105304843	Not Available	654	Open in IMG/M
3300005332\|Ga0066388_106022934	Not Available	612	Open in IMG/M
3300005332\|Ga0066388_107464124	Not Available	549	Open in IMG/M
3300005334\|Ga0068869_101177556	Not Available	673	Open in IMG/M
3300005340\|Ga0070689_100445333	Not Available	1101	Open in IMG/M
3300005439\|Ga0070711_101461138	Not Available	596	Open in IMG/M
3300005467\|Ga0070706_100916926	Not Available	809	Open in IMG/M
3300005526\|Ga0073909_10335907	Not Available	696	Open in IMG/M
3300005526\|Ga0073909_10370116	Not Available	668	Open in IMG/M
3300005549\|Ga0070704_100726999	Not Available	882	Open in IMG/M
3300005713\|Ga0066905_102308228	Not Available	503	Open in IMG/M
3300005718\|Ga0068866_10485533	Not Available	814	Open in IMG/M
3300005764\|Ga0066903_103044125	Not Available	908	Open in IMG/M
3300005764\|Ga0066903_104038475	Not Available	786	Open in IMG/M
3300005764\|Ga0066903_107201172	Not Available	576	Open in IMG/M
3300005764\|Ga0066903_107790946	Not Available	551	Open in IMG/M
3300005843\|Ga0068860_100968939	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300005937\|Ga0081455_10193613	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300005983\|Ga0081540_1333642	Not Available	519	Open in IMG/M
3300006852\|Ga0075433_10267567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1515	Open in IMG/M
3300006854\|Ga0075425_100550808	Not Available	1328	Open in IMG/M
3300006854\|Ga0075425_100555862	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300006871\|Ga0075434_100021372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6288	Open in IMG/M
3300006871\|Ga0075434_101565356	Not Available	668	Open in IMG/M
3300009177\|Ga0105248_11829675	Not Available	689	Open in IMG/M
3300009177\|Ga0105248_13461863	Not Available	501	Open in IMG/M
3300009545\|Ga0105237_11006658	Not Available	840	Open in IMG/M
3300009553\|Ga0105249_13420472	Not Available	511	Open in IMG/M
3300009792\|Ga0126374_10970519	Not Available	664	Open in IMG/M
3300010043\|Ga0126380_12169845	Not Available	513	Open in IMG/M
3300010046\|Ga0126384_10400111	Not Available	1159	Open in IMG/M
3300010046\|Ga0126384_10587855	Not Available	973	Open in IMG/M
3300010046\|Ga0126384_12078359	Not Available	545	Open in IMG/M
3300010047\|Ga0126382_10619332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	894	Open in IMG/M
3300010047\|Ga0126382_11132620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300010047\|Ga0126382_11260802	Not Available	666	Open in IMG/M
3300010048\|Ga0126373_10826882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	989	Open in IMG/M
3300010358\|Ga0126370_10000153	All Organisms → cellular organisms → Bacteria	23785	Open in IMG/M
3300010358\|Ga0126370_10022333	All Organisms → cellular organisms → Bacteria	3664	Open in IMG/M
3300010358\|Ga0126370_10218828	All Organisms → cellular organisms → Bacteria → Proteobacteria	1453	Open in IMG/M
3300010358\|Ga0126370_10616375	Not Available	939	Open in IMG/M
3300010359\|Ga0126376_10211522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1617	Open in IMG/M
3300010360\|Ga0126372_10163397	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300010360\|Ga0126372_10218154	Not Available	1606	Open in IMG/M
3300010360\|Ga0126372_10758986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300010360\|Ga0126372_10773606	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300010360\|Ga0126372_12108091	Not Available	612	Open in IMG/M
3300010360\|Ga0126372_12423123	Not Available	575	Open in IMG/M
3300010362\|Ga0126377_10065094	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3224	Open in IMG/M
3300010366\|Ga0126379_10659840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1137	Open in IMG/M
3300010376\|Ga0126381_104471558	Not Available	540	Open in IMG/M
3300010398\|Ga0126383_10078299	All Organisms → cellular organisms → Bacteria → Acidobacteria	2876	Open in IMG/M
3300012948\|Ga0126375_10530250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300012971\|Ga0126369_10811902	Not Available	1018	Open in IMG/M
3300014968\|Ga0157379_11564098	Not Available	643	Open in IMG/M
3300015371\|Ga0132258_10481431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3100	Open in IMG/M
3300015372\|Ga0132256_100638502	Not Available	1180	Open in IMG/M
3300019361\|Ga0173482_10141090	Not Available	927	Open in IMG/M
3300021560\|Ga0126371_10908704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300021560\|Ga0126371_12537576	Not Available	620	Open in IMG/M
3300024232\|Ga0247664_1077111	Not Available	769	Open in IMG/M
3300024254\|Ga0247661_1013410	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300024283\|Ga0247670_1079142	Not Available	601	Open in IMG/M
3300024331\|Ga0247668_1069418	Not Available	712	Open in IMG/M
3300025900\|Ga0207710_10610987	Not Available	570	Open in IMG/M
3300025916\|Ga0207663_11349523	Not Available	574	Open in IMG/M
3300025939\|Ga0207665_11216505	Not Available	601	Open in IMG/M
3300026089\|Ga0207648_10999846	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300027654\|Ga0209799_1137680	Not Available	556	Open in IMG/M
3300027821\|Ga0209811_10230877	Not Available	704	Open in IMG/M
3300027874\|Ga0209465_10009021	All Organisms → cellular organisms → Bacteria	4407	Open in IMG/M
3300028379\|Ga0268266_10001991	All Organisms → cellular organisms → Bacteria	22890	Open in IMG/M
3300028381\|Ga0268264_10497643	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300031544\|Ga0318534_10057265	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2191	Open in IMG/M
3300031546\|Ga0318538_10062438	All Organisms → cellular organisms → Bacteria → Acidobacteria	1852	Open in IMG/M
3300031720\|Ga0307469_10702298	Not Available	917	Open in IMG/M
3300031740\|Ga0307468_101395814	Not Available	643	Open in IMG/M
3300031747\|Ga0318502_10140790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1370	Open in IMG/M
3300031779\|Ga0318566_10331243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300031821\|Ga0318567_10033238	All Organisms → cellular organisms → Bacteria	2585	Open in IMG/M
3300032043\|Ga0318556_10116441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1363	Open in IMG/M
3300032068\|Ga0318553_10363360	Not Available	758	Open in IMG/M
3300032180\|Ga0307471_103844624	Not Available	531	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.00%
Host-Associated	Host-Associated	20.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Plants	Host-Associated → Plants	20.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.19%
Loam	Environmental → Terrestrial → Soil → Loam	23.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02272600	2088090014	Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVEFTIQQTVSEKAYQHDVVSNLRRQLSHNRK
INPgaii200_11393322	2228664022	Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADEHTQTAQLTPKLALAAKHELKSSLKYLSASEVEFTIQQTVSEKAYHHDVVSNLRRQLSHSRK
INPgaii200_11396582	2228664022	Soil	MNFIRRWRYGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK
INPhiseqgaiiFebDRAFT_1019681392	3300000364	Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK*
INPhiseqgaiiFebDRAFT_1019688271	3300000364	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSAAEVESTVERVVSESAYHHQVVSNLRRQLNHNRK*
INPhiseqgaiiFebDRAFT_1019702442	3300000364	Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADEHTQTAQLTPKLALAAKHELKSSLKYLSASEVEFTIQQTVSEKAYHHDVVSNLRRQLSHSRK*
INPhiseqgaiiFebDRAFT_1019709303	3300000364	Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVEFTIQQTVSEKAYQHDVLSNLRRQLNHNRK*
F14TC_1039528831	3300000559	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE*
AP72_2010_repI_A10DRAFT_10254821	3300000651	Forest Soil	MNFIRRWRHGTERHQEQLLVKLWTINSLDADNHTETAQLTPKLALAARHELKASLKYLSAAEVESTIQETVSEKAYQHDIVSNLRRQLNHNRTGNGHK*
JGI1027J12803_1000267342	3300000955	Soil	KDIRPMNFIRRWRHGAERHQEQLLVKLWTINTLDADEHTQTAQLTPKLALAAKHELKSSLKYLSASEVEFTIQQTVSEKAYHHDVVSNLRRQLSHSRK*
JGI1027J12803_1068201001	3300000955	Soil	EQLLVKLWTINTLDADEHTQSAQLTPKLALAAKHELKSSLKYLSASEVESTIKQTVSEKAYQHDVVSNLRRQLNHNRK*
Ga0062593_1000001001	3300004114	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLALAARNELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE*
Ga0066398_101310821	3300004268	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLEADEHTQTAQLTPKLALAARRELKSSLKYLSASEVESTIEQTVSEEAYHHEVLNNLRRQLNHNRNGR*
Ga0062595_1004684572	3300004479	Soil	MNFIRRWRYGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSAAEVESTILQTVSEKAYQHDVVTNLRRQLNHNRK*
Ga0066395_100135453	3300004633	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLEADEHTQTAQLTPKLALAARRELKSSLKYLSASEVESTIEQTVSEKAYHHEVLNNLRRQLNHNRNGR*
Ga0065707_100116853	3300005295	Switchgrass Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLNNLRRQLNHNRNGRE*
Ga0066388_1000307331	3300005332	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTETAQLTPKLALAARHELKASLKYLSASEVESTIQETVSEKAYQHDVVSNLRRQLNHNRNGNG
Ga0066388_1002911583	3300005332	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLEADEHTQTAQLSPKLALAARRELKSSLKYLSASEVESTIEQTVSEKAYHHEVLNNLRRQLNHNRNGR*
Ga0066388_1003308692	3300005332	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYEHNVVSNLRRQLSHNKDGDGPK*
Ga0066388_1004377741	3300005332	Tropical Forest Soil	GAERHQEQLLVRLWTINSLDADHHTETAKLTPKLALAARHELKASLKYLSASEVESTIQETVSEKAYQHDVVSNLRRQLSHNRNGNGDK*
Ga0066388_1010995502	3300005332	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLAIAARHELKSSLKYLSAAEVESTIEETVSEKAYHHDVLNNLRRQLNHNRNGR*
Ga0066388_1021439701	3300005332	Tropical Forest Soil	MNFIRRWRHGAERNQEQLLVKLWTINTLDNEDHSFDATQPARLTPKLALAATSELRSSLKYLSPSEVEQTIASTVSENAYNHQVLHNLRRQLNHNRQR*
Ga0066388_1053048431	3300005332	Tropical Forest Soil	MNFIRRWRHGSERHQEQLLVKLWTINSLDADTNTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYQHDIVSNLRRQLSHNKDGNGHK*
Ga0066388_1060229341	3300005332	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDQTHSAQLTPKLALAAKHELKASLKYLSSAEVESTIQQTVSEKAYQHDVVTNLRRQLNHNRK*
Ga0066388_1074641242	3300005332	Tropical Forest Soil	HQEQLLVKLWTINTLETEDHTQDAHQPGRLTPKLALAATSELRSSLKYLSTTEVEQTVASTVSENAYHHQVLHNLRRQLNHNRPR*
Ga0068869_1011775562	3300005334	Miscanthus Rhizosphere	IRLKDIVPMNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELRSSLKYLSAAEVESTIEETVSEKAYHHDVLNNLRRQLNHSRNGSE*
Ga0070689_1004453332	3300005340	Switchgrass Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELRSSLKYLSAAEVESTIEETVSEKAYHHDVLNNLRRQLNHSRNGSE*
Ga0070711_1014611381	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINTLEADDHTQSAQLTPKLALAAKHELKSSLKYLSTAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK*
Ga0070706_1009169261	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNFIRRWRYGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLSHNRK*
Ga0073909_103359072	3300005526	Surface Soil	QEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE*
Ga0073909_103701161	3300005526	Surface Soil	ERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLSHNRK*
Ga0070704_1007269991	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSN
Ga0066905_1023082281	3300005713	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELRSSLKYLSAAEVESTIEETVSEKAYHHDVLSNLRRQLNHSRNGSE*
Ga0068866_104855331	3300005718	Miscanthus Rhizosphere	LKDIVPMNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLALAARNELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE*
Ga0066903_1030441252	3300005764	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLSLAARHELKSSLKYLSVTEVESTIEQTVSEKAYHHEILSNLRRQLNHNRSK*
Ga0066903_1040384752	3300005764	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYEHNIVSNLRRQLSHNRNGNDSK*
Ga0066903_1072011721	3300005764	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELKSSLKYLSAAEVETTIEQTVCEKAYEHNIVSNLRRQLSHNRDGNEPK*
Ga0066903_1077909461	3300005764	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTHSAQLTPKLALAAKHELKASLKYLSSAEVESTIQQTVSEKAYQHDVVTNLRRQLNHNRK*
Ga0068860_1009689392	3300005843	Switchgrass Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVEFTIQQTVSEQAYQHDVVSNLRRQLSHSRK*
Ga0081455_101936132	3300005937	Tabebuia Heterophylla Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTETAQLTPKLALAARHELKSSLKYLSASEVESTIQETVSEKAYQHDVVSNLRRQLSHNRDNNGHGHK*
Ga0081540_13336422	3300005983	Tabebuia Heterophylla Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLSLAARHELKSSLKYLSASEVESTIEQTVSEKAYHHEVLSNLRRQLNHNRNQR*
Ga0075433_102675671	3300006852	Populus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLSPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYEHDVVSNLRRQLSHNRNGNGHK*
Ga0075425_1005508081	3300006854	Populus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINTLDADSHTQSAQLTPKLALAAKHELKSSLKYLSAAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK*
Ga0075425_1005558622	3300006854	Populus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYEHDIVSNLRRQLSHTRDDNGHK*
Ga0075434_1000213723	3300006871	Populus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLAADDHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYEHDVVSNLRRQLSHNRNGNGHK*
Ga0075434_1015653562	3300006871	Populus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELRSSLKYLSAAEVESTVERVVSESAYHHQVVSNLRRQLNHNRK*
Ga0105248_118296752	3300009177	Switchgrass Rhizosphere	PMNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE*
Ga0105248_134618631	3300009177	Switchgrass Rhizosphere	IVPMNFIRRWRHGAERHQEQLLGKLWTINSLDADNHTQTAQLTPKLALAARHELRSSLKYLSAAEVESTIEETVSEKAYHHDVLNNLRRQLNHSRNCSE*
Ga0105237_110066581	3300009545	Corn Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE*
Ga0105249_134204721	3300009553	Switchgrass Rhizosphere	MNFIRRWRYGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDV
Ga0126374_109705192	3300009792	Tropical Forest Soil	MNFIRRWRYGAERHQAQLLVKLWTINTLDADDHTHSAQLTPKLALAAKHELKASLKYLTSAEVESTIQQTVSEKAYQHDVVTNLRRQLNHNRK*
Ga0126380_121698451	3300010043	Tropical Forest Soil	FRLKDIVPMNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLSLAARHELKSSLKYLSVSEVESTIEQTVSEKAYHHEILSNLRRQLNHNRSK*
Ga0126384_104001111	3300010046	Tropical Forest Soil	PATVPSQSRLKDIVPMNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGDGPK*
Ga0126384_105878551	3300010046	Tropical Forest Soil	MNLIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLAIAARHELKSSLKYLSAAEVESTIEETVSEKAYHHDVLSNLRRQLNHNRNGR*
Ga0126384_120783591	3300010046	Tropical Forest Soil	RRPATVPSQSRLKDIVPMNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYEHDIVSNLRRQLSHSKDDNGHK*
Ga0126382_106193322	3300010047	Tropical Forest Soil	MNFIRRWRYGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAAKHELRSSLKYLSASEVESTIEETVSEKAYHHDVLNNLRRQLNHNRNGRE*
Ga0126382_111326201	3300010047	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYEHDIVSNLRRQLSHSKDDNGHK*
Ga0126382_112608021	3300010047	Tropical Forest Soil	HRPMNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTETAQLTPKLALAARHELKASLKYLSASEVESTIQETVSEKAYQHDIVSNLRRQLSHNKDGNGHE*
Ga0126373_108268822	3300010048	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGNGPK*
Ga0126370_1000015315	3300010358	Tropical Forest Soil	MNFIRRWRHGAERHQEELLVKLWTINSLDADNHTQTAQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYEHNIVSNLRRQLSHNRDGNEPK*
Ga0126370_100223333	3300010358	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLSLAARHELKSSLKYLSVSEVESTIEQTVSEKAYHHEILSNLRRQLNHNRSK*
Ga0126370_102188282	3300010358	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLEADEHTQTAQLSPKLALAARRELKSSLKYLSASEVESTIEQTVLEKSYHHEVLNNLRRQLNHNRNGR*
Ga0126370_106163752	3300010358	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEETISEEAYNHDVVSNLRRQLHHSRNNGQ*
Ga0126376_102115222	3300010359	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYQHDIVSNLRRQLSHNKDGDGPK*
Ga0126372_101633971	3300010360	Tropical Forest Soil	LLVKLWTINSLDADNHTQTAQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYEHNVVSNLRRQLSHNRDGNEPK*
Ga0126372_102181542	3300010360	Tropical Forest Soil	MNFIRRWRYGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKASLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK*
Ga0126372_107589862	3300010360	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNL
Ga0126372_107736061	3300010360	Tropical Forest Soil	QEQLLVKLWAINSLDADNHTQTSQLTPKLTLAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGNGPK*
Ga0126372_121080911	3300010360	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTHTSQLTPKLALAARHELKSSLKYLSVDEVESTIEQTVSEKAYQHDIVSNLRRQLSHNRDGDGEK*
Ga0126372_124231231	3300010360	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTETAQLTPKLALAARHELKASLKYLSASEVESTIQETVSEKAYQHDVVSNLRRQLNHNRNGNGNGPK*
Ga0126377_100650943	3300010362	Tropical Forest Soil	MNFIRRWRHGSERHQEQLLVKLWTINSLDADTNTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVSEKAYQHDIVSNLRRQLSHNKDGNGPK*
Ga0126379_106598402	3300010366	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGDGPK*
Ga0126381_1044715581	3300010376	Tropical Forest Soil	HQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGNGPK*
Ga0126383_100782991	3300010398	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADQQTQTSQLTPKLALAARHELKSSLKYLSSAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGNEPK*
Ga0126375_105302501	3300012948	Tropical Forest Soil	MNFIRRWRHGTERHQEQLLVKLWTINSLDADNHTETAQLTPKLAHAARQELKASLKYLSASEVESTIQETVSEKAYQHDIVSNLRRQLNHNRNGHK*
Ga0126369_108119023	3300012971	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVEFTIQQTVSEKAYQHDVVSNLRRQLNHNRK*
Ga0157379_115640982	3300014968	Switchgrass Rhizosphere	PMNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVEFTIQQTVSEQAYQHDVVSNLRRQLSHSRK*
Ga0132258_104814314	3300015371	Arabidopsis Rhizosphere	EEFALAIRLKDIRPMNFIRRWRHGAERHQEQLLVKLWTINSLDADENTQTAQLTPKLALAARHELRSSLKYLSAAEVESTVERVVSESAYHHQVVSNLRRQLNHNRK*
Ga0132256_1006385021	3300015372	Arabidopsis Rhizosphere	MNFIRRWRYGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQPDVVSNLRRQLSHNRK*
Ga0173482_101410901	3300019361	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLALAARNELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGR
Ga0126371_109087042	3300021560	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLSLAARHELKSSLKYLSVTEVESTIEQTVSEKAYHHEILSNLRRQLNHNRSK
Ga0126371_125375762	3300021560	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGNGPK
Ga0247664_10771111	3300024232	Soil	EEFALAIRLKDIRPMNFIRRWRHGAERHQEQLLVKLWTINSLDADENTQTAQLTPKLALAARHELRSSLKYLSAAEVESTVERVVSESAYHHQVVSNLRRQLNHNRK
Ga0247661_10134102	3300024254	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADENTQTAQLTPKLALAARHELRSSLKYLSAAEVESTVERVVSESAYHHQVVSNLRRQLNHNRK
Ga0247670_10791421	3300024283	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLNNLRRQLNHNRNGRE
Ga0247668_10694181	3300024331	Soil	MNFIRRWRYGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLSHNRK
Ga0207710_106109871	3300025900	Switchgrass Rhizosphere	TIALAIRLKDIVPMNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELRSSLKYLSAAEVESTIEETVSEKAYHHDVLNNLRRQLNHSRNGSE
Ga0207663_113495231	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	ICPMNFIRRWRHGAERHQEQLLVKLWTINTLEADDHTQSAQLTPKLALAAKHELKSSLKYLSTAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK
Ga0207665_112165051	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK
Ga0207648_109998461	3300026089	Miscanthus Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADDHTQTAQLTPKLALAARNELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE
Ga0209799_11376801	3300027654	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLEADEHTQTAQLTPKLALAARRELKSSLKYLSASEVESTIEQTVSEEAYHHEVLNNLRRQLNHNRNGR
Ga0209811_102308772	3300027821	Surface Soil	RWRHGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE
Ga0209465_100090212	3300027874	Tropical Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLEADEHTQTAQLTPKLALAARRELKSSLKYLSASEVESTIEQTVSEKAYHHEVLNNLRRQLNHNRNGR
Ga0268266_1000199122	3300028379	Switchgrass Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINSLDADNHTQTAQLTPKLALAARHELRSSLKYLSAAEVESTIEETVSEKAYHHDVLNNLRRQLNHSRNGSE
Ga0268264_104976431	3300028381	Switchgrass Rhizosphere	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVEFTIQQTVSEQAYQHDVVSNLRRQLSHSRK
Ga0318534_100572652	3300031544	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTVEQTVCEKAYQHDIVSNLRRQLSHNKDGNGHK
Ga0318538_100624381	3300031546	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTVEQTVCEKAYQHDIVSN
Ga0307469_107022982	3300031720	Hardwood Forest Soil	MNFIRRWRHGAERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKSSLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLSHNRK
Ga0307468_1013958142	3300031740	Hardwood Forest Soil	HGAERHQEQLLVKLWTINSLDADEHTQTAQLTPKLALAARHELKSSLKYLSASEVESTIEQTVSEKAYHHDVLSNLRRQLNHNRNGRE
Ga0318502_101407902	3300031747	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTVEQTVCEKAYQHDI
Ga0318566_103312431	3300031779	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTVEQTVCEKAYQHDIVSNLRRQLSHNKDG
Ga0318567_100332381	3300031821	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTIEQTVCEKAYQHDIVSNLRRQLSHNKDGNGHK
Ga0318556_101164411	3300032043	Soil	MNFIRRWRHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTVEQTVCEKAYQHDIVSNLRRQLSHNKDGNG
Ga0318553_103633602	3300032068	Soil	RHGAERHQEQLLVKLWTINSLDADHHTQTSQLTPKLALAARHELKSSLKYLSAAEVESTVEQTVCEKAYQHDIVSNLRRQLSHNKDGNGHK
Ga0307471_1038446242	3300032180	Hardwood Forest Soil	AERHQEQLLVKLWTINTLDADDHTQSAQLTPKLALAAKHELKASLKYLSSAEVESTIQQTVSEKAYQHDVVSNLRRQLNHNRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095075

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences