Metagenome Family F094732

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094732
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	49 residues
Representative Sequence	MHRLNINPDVKPVKQQQRRFRPEIMEAIQSEVTKLIDSGFIREE
Number of Associated Samples	8
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	45.00 %
% of genes near scaffold ends (potentially truncated)	65.71 %
% of genes from short scaffolds (< 2000 bps)	92.38 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (88.571 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave (96.191 % of family members)
Environment Ontology (ENVO)	Unclassified (96.190 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (96.190 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.72% β-sheet: 0.00% Coil/Unstructured: 65.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00078	RVT_1	10.48

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
All Organisms	root	All Organisms	11.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
cellular organisms	root	All Organisms → cellular organisms	10.48 %
Viruses	superkingdom	All Organisms → Viruses	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	8.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	8.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	7.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	7.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	7.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	7.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	7.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	7.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Asparagales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Asparagaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Asparagoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Asparagus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Asparagus officinalis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	6.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005562\|Ga0058697_10242652	Not Available	836	Open in IMG/M
3300005562\|Ga0058697_10298337	Not Available	768	Open in IMG/M
3300005562\|Ga0058697_10353835	Not Available	716	Open in IMG/M
3300005562\|Ga0058697_10358973	Not Available	712	Open in IMG/M
3300005562\|Ga0058697_10370958	Not Available	702	Open in IMG/M
3300005562\|Ga0058697_10391333	Not Available	687	Open in IMG/M
3300005562\|Ga0058697_10409850	Not Available	674	Open in IMG/M
3300005562\|Ga0058697_10421570	Not Available	666	Open in IMG/M
3300005562\|Ga0058697_10457428	Not Available	644	Open in IMG/M
3300005562\|Ga0058697_10483881	Not Available	629	Open in IMG/M
3300005562\|Ga0058697_10484073	Not Available	629	Open in IMG/M
3300005562\|Ga0058697_10573844	Not Available	586	Open in IMG/M
3300005562\|Ga0058697_10598123	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	576	Open in IMG/M
3300005562\|Ga0058697_10616476	Not Available	568	Open in IMG/M
3300005562\|Ga0058697_10631345	Not Available	563	Open in IMG/M
3300005562\|Ga0058697_10674219	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	547	Open in IMG/M
3300005562\|Ga0058697_10691374	Not Available	542	Open in IMG/M
3300005562\|Ga0058697_10703831	Not Available	538	Open in IMG/M
3300005562\|Ga0058697_10733014	Not Available	529	Open in IMG/M
3300005562\|Ga0058697_10740028	Not Available	527	Open in IMG/M
3300005661\|Ga0058698_10029960	Not Available	2536	Open in IMG/M
3300005661\|Ga0058698_10053140	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	2007	Open in IMG/M
3300005661\|Ga0058698_10054513	Not Available	1987	Open in IMG/M
3300005661\|Ga0058698_10154818	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300005661\|Ga0058698_10278225	Not Available	989	Open in IMG/M
3300005661\|Ga0058698_10282760	Not Available	982	Open in IMG/M
3300005661\|Ga0058698_10329828	Not Available	913	Open in IMG/M
3300005661\|Ga0058698_10337990	Not Available	903	Open in IMG/M
3300005661\|Ga0058698_10383719	Not Available	850	Open in IMG/M
3300005661\|Ga0058698_10412114	Not Available	822	Open in IMG/M
3300005661\|Ga0058698_10500736	Not Available	747	Open in IMG/M
3300005661\|Ga0058698_10537961	Not Available	722	Open in IMG/M
3300005661\|Ga0058698_10561355	Not Available	707	Open in IMG/M
3300005661\|Ga0058698_10561699	Not Available	706	Open in IMG/M
3300005661\|Ga0058698_10567800	Not Available	703	Open in IMG/M
3300005661\|Ga0058698_10569556	Not Available	702	Open in IMG/M
3300005661\|Ga0058698_10579164	Not Available	696	Open in IMG/M
3300005661\|Ga0058698_10594759	Not Available	687	Open in IMG/M
3300005661\|Ga0058698_10598351	Not Available	685	Open in IMG/M
3300005661\|Ga0058698_10695508	Not Available	635	Open in IMG/M
3300005661\|Ga0058698_10731177	Not Available	619	Open in IMG/M
3300005661\|Ga0058698_10737581	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	616	Open in IMG/M
3300005661\|Ga0058698_10740413	Not Available	615	Open in IMG/M
3300005661\|Ga0058698_10752216	Not Available	610	Open in IMG/M
3300005661\|Ga0058698_10767229	Not Available	604	Open in IMG/M
3300005661\|Ga0058698_10827305	Not Available	581	Open in IMG/M
3300005661\|Ga0058698_10863005	Not Available	568	Open in IMG/M
3300005661\|Ga0058698_10869377	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	566	Open in IMG/M
3300005661\|Ga0058698_10878184	Not Available	563	Open in IMG/M
3300005661\|Ga0058698_10887063	Not Available	560	Open in IMG/M
3300005661\|Ga0058698_10936069	Not Available	544	Open in IMG/M
3300005661\|Ga0058698_10962893	Not Available	536	Open in IMG/M
3300005661\|Ga0058698_10980211	Not Available	531	Open in IMG/M
3300005661\|Ga0058698_11032068	Not Available	517	Open in IMG/M
3300005661\|Ga0058698_11034506	Not Available	517	Open in IMG/M
3300005661\|Ga0058698_11079171	Not Available	506	Open in IMG/M
3300009631\|Ga0116115_1190652	Not Available	518	Open in IMG/M
3300018033\|Ga0187867_10681007	Not Available	561	Open in IMG/M
3300019082\|Ga0187852_1343136	Not Available	589	Open in IMG/M
3300030692\|Ga0268250_10026678	Not Available	2129	Open in IMG/M
3300030692\|Ga0268250_10069529	Not Available	1427	Open in IMG/M
3300030692\|Ga0268250_10097100	Not Available	1249	Open in IMG/M
3300030692\|Ga0268250_10102513	Not Available	1222	Open in IMG/M
3300030692\|Ga0268250_10182806	Not Available	972	Open in IMG/M
3300030692\|Ga0268250_10201144	Not Available	936	Open in IMG/M
3300030692\|Ga0268250_10206789	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	925	Open in IMG/M
3300030692\|Ga0268250_10210169	Not Available	919	Open in IMG/M
3300030692\|Ga0268250_10231449	Not Available	884	Open in IMG/M
3300030692\|Ga0268250_10235589	Not Available	877	Open in IMG/M
3300030692\|Ga0268250_10272702	Not Available	826	Open in IMG/M
3300030692\|Ga0268250_10353456	Not Available	741	Open in IMG/M
3300030692\|Ga0268250_10373923	Not Available	724	Open in IMG/M
3300030692\|Ga0268250_10396831	Not Available	706	Open in IMG/M
3300030692\|Ga0268250_10525368	Not Available	626	Open in IMG/M
3300030692\|Ga0268250_10552783	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	612	Open in IMG/M
3300030692\|Ga0268250_10564104	Not Available	607	Open in IMG/M
3300030692\|Ga0268250_10670965	Not Available	561	Open in IMG/M
3300030692\|Ga0268250_10684384	Not Available	556	Open in IMG/M
3300030692\|Ga0268250_10710891	Not Available	547	Open in IMG/M
3300030692\|Ga0268250_10747594	Not Available	535	Open in IMG/M
3300030692\|Ga0268250_10795761	Not Available	520	Open in IMG/M
3300032159\|Ga0268251_10030001	All Organisms → Viruses → Predicted Viral	1679	Open in IMG/M
3300032159\|Ga0268251_10089434	Not Available	1081	Open in IMG/M
3300032159\|Ga0268251_10090215	Not Available	1077	Open in IMG/M
3300032159\|Ga0268251_10109828	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	994	Open in IMG/M
3300032159\|Ga0268251_10127328	Not Available	938	Open in IMG/M
3300032159\|Ga0268251_10193480	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300032159\|Ga0268251_10221039	Not Available	752	Open in IMG/M
3300032159\|Ga0268251_10276530	Not Available	688	Open in IMG/M
3300032159\|Ga0268251_10277227	Not Available	687	Open in IMG/M
3300032159\|Ga0268251_10361538	Not Available	619	Open in IMG/M
3300032159\|Ga0268251_10396849	Not Available	596	Open in IMG/M
3300032159\|Ga0268251_10404010	Not Available	592	Open in IMG/M
3300032159\|Ga0268251_10425134	Not Available	580	Open in IMG/M
3300032159\|Ga0268251_10431174	Not Available	577	Open in IMG/M
3300032159\|Ga0268251_10472171	Not Available	556	Open in IMG/M
3300032159\|Ga0268251_10493976	Not Available	546	Open in IMG/M
3300032159\|Ga0268251_10505943	Not Available	541	Open in IMG/M
3300032159\|Ga0268251_10611076	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	503	Open in IMG/M
3300032159\|Ga0268251_10616144	Not Available	501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	96.19%
Environmental	Environmental	3.81%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	96.19%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Phylloplane	Host-Associated → Plants → Phylloplane	96.19%
Freshwater	Environmental → Aquatic → Freshwater	2.86%
Sediment	Environmental → Aquatic → Sediment	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	96.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	96.19%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	96.19%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.95%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005661	Agave microbial communities from Guanajuato, Mexico - As.Sf.e	Host-Associated	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300030692	Agave microbial communities from Guanajuato, Mexico - As.Sf.e (v2)	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058697_102426522	3300005562	Agave	MPGLNPKVAMHHLNINPDAKPVKQQQRWFHPEIMKAIQSKVKKLIDSNFIREE*
Ga0058697_102983371	3300005562	Agave	MHRLNINPDAKPVKQQQRQFHPEIIEAIQSEVTKLIDSGFIREE*
Ga0058697_103538351	3300005562	Agave	MPELDPQIAMCHLNINLDTKPVKQQQQQFHPKIMEVNESEVKKLIDSSFVKEEQH
Ga0058697_103589733	3300005562	Agave	MPVLDPQVAMHRLNINSDAKLVKQQQRWFRLKIMKAIQSEVKKLIDSSFIREEQHLIG*
Ga0058697_103709582	3300005562	Agave	MPGLYPQIAMHRLNINPNAKSVKQQQRWFRLEIMEAIELEIKKLIDFGFVREEQHPD*
Ga0058697_103913332	3300005562	Agave	MLGLDPQVAMHHININLDAKLIKQQQ*QFRSEIMEAIQSEVTKLIDSDFIREEQHPDWV
Ga0058697_104098502	3300005562	Agave	MHHLNINPEAKPVKQQQRQFRLEIMEAIQSKVKKLIDSDFI
Ga0058697_104215701	3300005562	Agave	DLDPQVAMHHLNINPDAKLVKQQQRQFHPTIMEVIQSVVKKFIDSGFIREEQYPD*
Ga0058697_104574282	3300005562	Agave	MYRLNINSNVKPVKQEQRQFRLKIMEAIESKVKKLIDFGFIREEQHPDWVANII
Ga0058697_104838811	3300005562	Agave	MHGLDPQVAMYHLNIKPDAKSVKQQQRRFPDIMEAIKAEIQKLIECGFIREEQHPD
Ga0058697_104840732	3300005562	Agave	MPGLDPQVAMHHLNINLDVKPVKQQRWFCSEIMEAIQSELKKLIDSGFIREEQHPD
Ga0058697_105738441	3300005562	Agave	QIAMHHLNINPDAKPVKQQQRWFPHKIMKEIESKVKKLIYSGFVREEQHPD*
Ga0058697_105981231	3300005562	Agave	MFLLGTIGVDPQVAIQHLNINSDTKPVKQQQRWFHPEIMEAIQLEVKKLINSDFIREEQYPD*
Ga0058697_106164762	3300005562	Agave	MHRLNISPDMKPVKQQQRRFRPEIMKAIQSEVRKLIDSGFIREEQH
Ga0058697_106313453	3300005562	Agave	MPGLDPQVAMHCPNINLDVKPIKQQQRWFRLGIREVIQSEVKKLID
Ga0058697_106742192	3300005562	Agave	AMHRLNINSDAKPVKQQQRRFRLEIMEAIQLEVKKLIDSGFIREE*
Ga0058697_106913742	3300005562	Agave	MHRLNINPDVKPVKQQQRRFRPEIMEAIQSEVTKLIDSGFIREE
Ga0058697_107038311	3300005562	Agave	PQIAMHRLNIKPDIKPVKQQRQFLPNIMKAIEAEVHKLIECGFIREEQHPD*
Ga0058697_107330142	3300005562	Agave	MHRLNINPDVKPVKQQQLRFCIIEAIQLEVMKLIDSSYIREEQHLDWVANIVP
Ga0058697_107400281	3300005562	Agave	MPGLDPRMAMHRLNFNSDAKPVKQQQRWFCLEIMEAIQSKVKKLIDSGFI
Ga0058698_100299602	3300005661	Agave	MPGLDSQIAMHRLNIKPDVKPVKQQQRFRSNIMEAIEAEVHKLIACSFKREEQHLD
Ga0058698_100531404	3300005661	Agave	MPSHDSQIAMHRLNIKPDVDLVKQQQRWFHPEIMEAIEVEVYKLIACDFIREE*
Ga0058698_100545133	3300005661	Agave	MPVLNPQIAKHHLNINPNAKPVKQQQRRFCPEIMRAIELEVKKVIDSGFIREE*
Ga0058698_101548183	3300005661	Agave	MPNLDPQVAMHHLNINLDVKPVKQQQ**LHSEIMEAIRSVVKKLIDFVFIREEQHP
Ga0058698_102298443	3300005661	Agave	MPGLDPQVAMHRLNINMDAKRVKQQQQWFRMEIMEAIK*
Ga0058698_102782252	3300005661	Agave	VVLHHLSINLDAKSIKQQQRQFRPEIMEAIQSEVKKLIDSDFIREEQHPD*
Ga0058698_102827601	3300005661	Agave	MHRLNIRPDAKPVKQQQRRFRPDIMEAIEVEVHKLIACGFIREEQHLD*
Ga0058698_103298281	3300005661	Agave	MYWLNIKPDVKPVKKQQRRFRPNIMEVIEVEVHKLIACGFLREEQHLD*
Ga0058698_103379902	3300005661	Agave	MHHLNIKPDAKPVKQERRQFPNIIEAIKAEVHKLIECGFIQEE
Ga0058698_103837192	3300005661	Agave	MHHLNINSNAKPIKQQQQWFRLEIMEAIQSKVTKLIVSGFIREE*
Ga0058698_104121142	3300005661	Agave	MHRLNINPDVKPVKQQQRRFRPEIMEAIQSEVTKLIDYGFIREENTLIE*
Ga0058698_105007362	3300005661	Agave	MYCLNINPDAKPVKQQQRQFHPEIMEAIESEVKKLIDSGFVREEQHPDW
Ga0058698_105379613	3300005661	Agave	MHHLNIKPDVKPVKQQQRRFRPDIMGAIEAEVHKLIA
Ga0058698_105613551	3300005661	Agave	MNHLNINPDAKLVKQKQWFYLDIMEEIKSEVKKLIDSDFIREEQHPD
Ga0058698_105616991	3300005661	Agave	MHRLNIKPDTKPIKQQQCQFRPNIMEAIEAEVHKLIACGFIREEQHPDLV
Ga0058698_105678001	3300005661	Agave	MHRLNIKSDVKPVKQQQRQFHPNIMEDIEAEVHGLIECGFIREE*
Ga0058698_105695561	3300005661	Agave	IAMHHLNIKPDIKPVKQRQRQFCLDIMKAIEAEIHKLIAYGFIWEE*
Ga0058698_105791641	3300005661	Agave	MHRLNINSDVKPVKQQQRWFHPEIIEAIQSEVKKLIDSSFIKEE
Ga0058698_105947592	3300005661	Agave	MSGLYPQVAMHQLNINPDAKPVKQQQRWFCPEIMEAIQSEVEKLIDSDFMKEE*
Ga0058698_105983511	3300005661	Agave	MHRLNIKPDIKQVKQKQRRFWPDIMEAIKAEVHKLIECGFVREEKHPD*
Ga0058698_106955082	3300005661	Agave	MHRLNIKPGVKPVKQHQRRFSPDIIEAIEAEVRKLIECDFIQEE*
Ga0058698_107311772	3300005661	Agave	MHRLNINPDAKPVKQQQQ*FCPEIMGTIESEVKKLIDSGFIREEQHPD
Ga0058698_107375811	3300005661	Agave	MALHRLNIKPDAKLVKQQQRRFRPDVMEVIKTEVHKLIECSFIRE
Ga0058698_107404131	3300005661	Agave	MHRLNINPDAKPVKQHQRRFRPEIMEVIQSKVKKLID
Ga0058698_107522162	3300005661	Agave	MLGLDPQVAMHRLNIKLDVKPVKQQQCRFRPNIMEVIEAEVHKLIACGFIREEQHPDWV
Ga0058698_107672291	3300005661	Agave	MHRLNIKPDAKPVKQQQHRLHPNIMEAIEAKVHKLIACGFI
Ga0058698_108273052	3300005661	Agave	MLGLDPQVAMHRQNIKPDVKPVKQQQ*RFRLDVLGAIEAEVYKLFACGFIREEQHPDR
Ga0058698_108630052	3300005661	Agave	MHCLNINSDAKPVKQQQ*LFCPEIMEPIESEVKKLIDSDFIREEQH
Ga0058698_108693771	3300005661	Agave	MPELNPQITMDHLNINPDAKPVKQQK*RFCFEIMEAIKLEVKKLIDSGFVRKEQ
Ga0058698_108781841	3300005661	Agave	PQVAMHRLNINPDAKPIKQQQRQFRPEIMEAIQSEVKKLINSNFIREE*
Ga0058698_108870631	3300005661	Agave	MPGIDPQIAMHRLNINPDAKPVKYQQ*RFHPEEAIESEVKKLIDSGFVR
Ga0058698_109360692	3300005661	Agave	MHHLNIKPDAKPVKQQQR*FRPNIMEAIEVKVHKLIACGFIREEQHPDWVANI
Ga0058698_109628931	3300005661	Agave	MHHLNIKPDIKPVKQQQRRFRPNIMEAIEAEVHKLIACGFIR
Ga0058698_109802112	3300005661	Agave	MLGLDPQVAMHRLNINPDAKPVKQQQLWFRPEIMEAIQSEVKKLIDSDFIREEQHPDWVA
Ga0058698_110198161	3300005661	Agave	MLGLDLQIAIQCLNINPNAKQVKQQQSRFCPEIMKAIESEVKKL
Ga0058698_110320682	3300005661	Agave	MPGLNPRVAMHCLNINSDLKPVKQQQRQFYPKVMEAIQSEVEKLIDSGFIRKSNILFG*
Ga0058698_110345062	3300005661	Agave	MTGLDPQIAMHYLNIKPDVKLVKQQQRRFHPDIMEAIEAEVHKLIECGFKREEQHPD*
Ga0058698_110791711	3300005661	Agave	MHCLNIKPDANPVKQQQRQFRPDIMEAIEAEVHRLIECGFIREEQ
Ga0116115_11906521	3300009631	Peatland	GIFYFSPMHRLNIKSGVKPIKQQQRWFFPDIIEAIETKVNKLIECGFIREE*
Ga0137424_11142502	3300011412	Soil	MPGLNLQVAMHRLNINPDVKPVKQQQ*RFHPEIIEAIKSEVKKLINSG
Ga0187867_106810071	3300018033	Peatland	MHGLDPKIAMHRLNIKPDSKPVKQQQCQFCPDIVSAIKTEVNMLIESGFIQEE
Ga0187852_13431362	3300019082	Peatland	MHRLNINTDAKPVKQQQRRFRPKIMEAIESEVKKLIDFGFIREEQHPDWV
Ga0268250_100266782	3300030692	Agave	MHGLDPQVAMYHLNIKPDAKSVKQQQRRFXPDIMEAIKAEIQKLIECGFIREEQHPD
Ga0268250_100695292	3300030692	Agave	MHGLDPQIVMHHLNINLDSKLVKRQQRRFRPKTMEAIESEVKKLIDSGFAMKELHPN
Ga0268250_100971003	3300030692	Agave	MHRLNINPNAKSVKQQQRRFRPDIIEAIQLEVKKLIDFNFIRVEQHPDWETN
Ga0268250_101025131	3300030692	Agave	MHRLNIKPDIKPVKQQQRQFCPNIMEAIEAEVHKLITCGFIREEQHPDWVANI
Ga0268250_101828063	3300030692	Agave	MHHLNINLDAKPVKQQQRRVHSEIMEAIESEVKKLIDSGFIKE
Ga0268250_102011441	3300030692	Agave	MSGLDRQIAMHRRNINPNAKPVKQQQXXLHPEIMEAIESEVKKLIDSGFIREEQ
Ga0268250_102067892	3300030692	Agave	MPELNPQITMDHLNINPDAKPVKQQKXRFCFEIMEAIKLEVKKLIDSGFVRKEQ
Ga0268250_102101691	3300030692	Agave	MHCLNINPDAKPVKQQQRRLRPEIMETIQSEVTKLIDSG
Ga0268250_102314491	3300030692	Agave	MPRLDPQVAMHQLNISPDAKPIKQHQRWFRPEIMEAIQSKVKKLIHSGFIR
Ga0268250_102355892	3300030692	Agave	MHRLNINLDAKTVKQQQRRFRPEIMEAIQSEVTKLIDSGFIKKKQHPD
Ga0268250_102727022	3300030692	Agave	LNIKPDDKPVKQQQRCFXPDIMEAIEAELQKFMECGLIREEQHPD
Ga0268250_103053162	3300030692	Agave	MHCLNIKPDANPVKQQQRQFRPDIMEAIKAEVHRLIECDFIREEQHPDWVSNIVPVFK
Ga0268250_103534561	3300030692	Agave	LNIKHEVKPVKQQRRFRPDIMEAIEAEVHKLIACGFIREE
Ga0268250_103739232	3300030692	Agave	MHRLNINTDAKPVKQQQRQFRPEIMEAIQSEVRKLINSGFIREEQH
Ga0268250_103968313	3300030692	Agave	MHRLNINPDVKPVKQQQRRFRPEIMEAIQSEVTKLIDYGFIREENTLIE
Ga0268250_105253681	3300030692	Agave	MHHLNINPDAKSVKQQQQRFRPEIMKAIKLEVKKLIDFGFFREEQHPDW
Ga0268250_105527831	3300030692	Agave	MPGLDSQVAMHRLNIKPDIKPVKQQQRRFRSDIIGAIEVKVHKLIACGFIP
Ga0268250_105641043	3300030692	Agave	MHRLNINSDVKPIKQQQXRFHSEIIEAIESEVKKLIDSGFIKEEQNLIG
Ga0268250_106709651	3300030692	Agave	MPGHDSQIAMHRLNIKPDVDLVKQQQRWFHPEIMEAIEVEVYKLIACDFIREE
Ga0268250_106843841	3300030692	Agave	MHRLNISPDVKPVNQQQRWFRPEIIEAIQSEVKKLINSDF
Ga0268250_107108911	3300030692	Agave	MHHLNINQHMKPVKQLQXRFRPEIIEAIKLEVTKLIHSGFIREEQHSDMVINI
Ga0268250_107475942	3300030692	Agave	MHRLNIKPDVKPVKQQQRXFRSNIMEAIEAEVHKLIACGFIREEQHPD
Ga0268250_107957612	3300030692	Agave	MHHLNIKSDVKPVIQQQRWFXPDIMEEIEAEAQKLIECGFIREQQHPNWVAN
Ga0268251_100300012	3300032159	Agave	MHRLNINPDAKPVKQQQRRFHLKIMEAIQSEVKKLIDFGFIREEQHPDWV
Ga0268251_100894342	3300032159	Agave	MPGLYPQIAMHRLNINPNAKSVKQQQRWFRLEIMEAIELEIKKLIDFGFVREEQHPD
Ga0268251_100902151	3300032159	Agave	MPDFDPQIVMHRLNIKSDVMPVKQQQQRFCPDIMEAIEAEVHKLIEYGFIHEEQHPD
Ga0268251_101098282	3300032159	Agave	PGLNPQVAMHRLNINTDVKPVRQQRRFRPEIMEAIQSEVKKLINSGFIREE
Ga0268251_101273282	3300032159	Agave	MHCLNIKPDANPVKQQQRQFRPDIMEAIEAKVHRLIECGFIREEQHPI
Ga0268251_101934803	3300032159	Agave	MHRFNINLDAKSVKQQQRRFRPEIMEAIEFEVKKLIDYGSVREEQHPD
Ga0268251_102210391	3300032159	Agave	MPGIDPQISMHRLNINLDAKPVKQQQXXFRPEIMKAIKSEVKKLIDSSFVKKEQHPD
Ga0268251_102765301	3300032159	Agave	MHRLNINPDAKLIKQQQQFRPEIIEAIESEVKKIIDSGFVR
Ga0268251_102772272	3300032159	Agave	DIPSLGPQIAMHRLNIKPDIKPVKQQRQFLPNIMKAIEAEVHKLIECGFIREEQHPD
Ga0268251_103615381	3300032159	Agave	MHRLNINPDAKPVKQQQRRFRPEIMEAIESEVKKLIDSGFVREQHPNWVAILFMF
Ga0268251_103968492	3300032159	Agave	LNIKPDVKPVKQQQRRFRPDTMEAIEAEVQKLIECGFIREE
Ga0268251_104040101	3300032159	Agave	MHHLNINPDAKLVKQQQRQFRPEIMKAIQLEVKKFVNSDFIREE
Ga0268251_104251341	3300032159	Agave	MHRLNIRPDVKPVKQQQRRFHPNIIEAIEAKVHKLIKWLHTG
Ga0268251_104311742	3300032159	Agave	VAMHRLNINPNVKPVKQQQRRFCLKIMEAIQSEVKKLIDSDFIRDE
Ga0268251_104721712	3300032159	Agave	MHHLNIKPDARLVKQQQRRFLPYVMEAIEAEVKKLIECGFI
Ga0268251_104939761	3300032159	Agave	MHRLNINTDVKPVKQQQRRFRPEIMEAIQSEVRKLID
Ga0268251_105059432	3300032159	Agave	MHRLNINLDAKPVKQQQXRFCPDIMEAIESEVKKLID
Ga0268251_105865781	3300032159	Agave	MPGLDLKVAMHRLNVNPNAGPIKQQQQWFRPGIMEAIQSDVKKLI
Ga0268251_106110761	3300032159	Agave	MHRLNINPDAKPVKQQQRRFRPEIMEAIQSEVTKLIDSDFI
Ga0268251_106161441	3300032159	Agave	LNIKPDAKSVKQQRWFRPDIMKAIEAEVHKLIEYGFIREK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094732

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences