Metagenome / Metatranscriptome Family F094559

Basic Information
Family ID	F094559
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	49 residues
Representative Sequence	MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVCARTGA
Number of Associated Samples	82
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	8.49 %
% of genes from short scaffolds (< 2000 bps)	6.60 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Most Common Taxonomy
Group	Unclassified (97.170 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (31.132 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.679 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.56% β-sheet: 8.33% Coil/Unstructured: 86.11%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00069	Pkinase	5.66
PF01152	Bac_globin	2.83
PF07992	Pyr_redox_2	1.89
PF13581	HATPase_c_2	1.89
PF04978	DUF664	1.89
PF13191	AAA_16	0.94
PF00196	GerE	0.94
PF03795	YCII	0.94
PF00583	Acetyltransf_1	0.94
PF07228	SpoIIE	0.94
PF01738	DLH	0.94
PF02080	TrkA_C	0.94
PF02566	OsmC	0.94
PF12728	HTH_17	0.94
PF00313	CSD	0.94
PF01022	HTH_5	0.94
PF06689	zf-C4_ClpX	0.94
PF13424	TPR_12	0.94
PF01266	DAO	0.94
PF05973	Gp49	0.94
PF09118	GO-like_E_set	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	22.64
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	2.83
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.94
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.94
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.94
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
All Organisms	root	All Organisms	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
cellular organisms	root	All Organisms → cellular organisms	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.17 %
Gemmata massiliana	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata massiliana	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300009801\|Ga0105056_1046042	Not Available	601	Open in IMG/M
3300009820\|Ga0105085_1023666	Not Available	1068	Open in IMG/M
3300009836\|Ga0105068_1060972	Not Available	694	Open in IMG/M
3300009840\|Ga0126313_10164833	Not Available	1683	Open in IMG/M
3300027577\|Ga0209874_1100234	Not Available	690	Open in IMG/M
3300027954\|Ga0209859_1003844	All Organisms → cellular organisms → Bacteria	3386	Open in IMG/M
3300028814\|Ga0307302_10003758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6707	Open in IMG/M
3300031995\|Ga0307409_102747260	Not Available	520	Open in IMG/M
3300032002\|Ga0307416_101249753	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata massiliana	848	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.81%
Host-Associated	Host-Associated	30.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.21%
Plants	Host-Associated → Plants	30.19%
Aquatic	Environmental → Aquatic	6.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.36%
Sediment	Environmental → Aquatic → Sediment	6.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.94%
Phylloplane	Host-Associated → Plants → Phylloplane	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.36%
Sand	Environmental → Terrestrial → Soil → Sand	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Loam	Environmental → Terrestrial → Soil → Loam	0.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.36%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	8.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	15.09%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	10.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.49%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.66%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.94%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.94%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009797	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1100991072	3300000956	Soil	MRYKVGAEQLQQVPTLLHRPDTAFRASRTAPAGPTHAV
F14TB_1004505331	3300001431	Soil	MRYQVGAEQLQQVPTLVHRPDSPFRPSRAAPVGPTHAVSTRTG
Ga0068861_1012495211	3300005719	Switchgrass Rhizosphere	MLPRFHAGGLPMRYKVGAEQLQQVPTLVHRPDTAFRASRTVPAGPTHAVSTRTGEVACGFKVDELEVLDQD
Ga0074051_116785631	3300006572	Soil	MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTH
Ga0075428_1001686021	3300006844	Populus Rhizosphere	MRYKVGAEQLERVPAMAYRPGGVYRAPRIAPVGPAH
Ga0075421_1005632893	3300006845	Populus Rhizosphere	MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGITVDGLEVLDQDWEE
Ga0075431_1002837513	3300006847	Populus Rhizosphere	MRYKIGAEQLQQVPTLLHRPDTAFRASRVAPAGPTHAVSTRTG
Ga0075433_100377151	3300006852	Populus Rhizosphere	MRYKVGAEQLQPARLLVHRPDTVFGAGRTAPVGPTHAVCARTGAIVCG
Ga0075420_1016976301	3300006853	Populus Rhizosphere	MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAA
Ga0075424_1025603271	3300006904	Populus Rhizosphere	MRYKVGAEQVEHVLSLAHRPDGVFRAARTAPVGPTHAVDAATDAVACGIKTDGLDVLDQDWEEA
Ga0075419_113181063	3300006969	Populus Rhizosphere	MRYKVGAEQLQRVPSLAHRADGVFRVARTAPVGPTHAVCAVTGAT
Ga0079218_115578692	3300007004	Agricultural Soil	MCDRVGAEQLQQAPSPGPRADGVCRSARTALVGPTHAVAAATGTAACGI
Ga0105679_102584602	3300007790	Soil	MRYKLGAGQIRQVPSLVHRPTGVFRAARTAPVGPTHAVCVSSGTAV
Ga0075418_103658861	3300009100	Populus Rhizosphere	MRYKVGAEQLQQVPSLAHRADGVFRVARTAPVGPTHAVCAVTGATVCGIE
Ga0114129_131915212	3300009147	Populus Rhizosphere	MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVCARTGA
Ga0075423_125025541	3300009162	Populus Rhizosphere	MRYKVGAEQLERVPAMAYRPGGVYRAPRIAPVGPAHAVDAGSGRVACGIS
Ga0126307_112828231	3300009789	Serpentine Soil	MRYKVGAEQVEQVPSLAHRPDGVFRGVRTAPVGPTHAVDAATGAAACGIKAHELDVL
Ga0126307_115198481	3300009789	Serpentine Soil	MRYKVGAEQLEQVPSMVRRPNGVFRSARITPVGPTHAVATAS
Ga0105080_10504771	3300009797	Groundwater Sand	MRYKVGAEQMEQVPSLAHRPDGVFRAARTTPVGPTHAVNAATGTVACGM
Ga0105056_10460421	3300009801	Groundwater Sand	MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGATHAVDT
Ga0105088_10993511	3300009810	Groundwater Sand	MRYKVGAEQMEQVPSLAHRPDGVFRAARTTPVGPTHA
Ga0105085_10236663	3300009820	Groundwater Sand	MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGPTHAVD
Ga0105068_10609721	3300009836	Groundwater Sand	MRYKVGAEQVEQIPSLAHRPDGVFRSARTAPVGPTHAVDAATGAVACGIKGRG
Ga0126313_101648331	3300009840	Serpentine Soil	MRYKVGAEQLEQIPSMAHRPDGVFRSARTVPVGPTHAVDAATGAIACG
Ga0126315_102033382	3300010038	Serpentine Soil	MRYKVGAEQLQQVPTLLHRPDTAFRASRTAPAGPTHAVSTRTGEAACGIRADGLEVLDQDWE
Ga0126309_110562051	3300010039	Serpentine Soil	MRYKVGAEQLQQVPSLVYRPETVFRAARTAPVGPTHAV
Ga0126308_102834801	3300010040	Serpentine Soil	MRYRVGAEQLQQVPTLVHRPDTAFRASRVAPAGPTHA
Ga0126312_111705732	3300010041	Serpentine Soil	MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGE
Ga0126314_107136422	3300010042	Serpentine Soil	MRYKLGAEQIRQVPSLAHRPDRVFRVARTAPVGPTHAVCASTGATVCG
Ga0126314_113901701	3300010042	Serpentine Soil	MRYRVGAEQLQQVPTLVHRPDTAFRASRVAPAGPTHAVSTKTGKAACGIKADGLEVLDQDWEE
Ga0126310_102476761	3300010044	Serpentine Soil	MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGIEADGLAVLDQD
Ga0126306_102988162	3300010166	Serpentine Soil	MRFKVGAEQLQQVPSLVHRSTGVFRVARTTPVGPTHAVDAATGVAVCGIKTEGLDVLD*
Ga0138513_1000318291	3300011000	Soil	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAPIGPTHAVCATTGATVCGI
Ga0137383_113317791	3300012199	Vadose Zone Soil	MRYKVGAEQLEHVPSLAHRPDGVFRVARTAPVGPTHAVDA
Ga0137372_105104092	3300012350	Vadose Zone Soil	MRFRVGAEQLEQVPSLAHRPDGVFRVARTAPVGPTHAVD
Ga0137372_106700141	3300012350	Vadose Zone Soil	MRYKVGAEQLEQVPSLAHRPDGVFRVARTAPVGPTHAV
Ga0137367_111533771	3300012353	Vadose Zone Soil	VRYKVGAERVEQVPPLAHRPDEVVRSARTTPVGPTHAVDAATG
Ga0137369_100720814	3300012355	Vadose Zone Soil	MRYKVGAEQVEQVPPLAHRPDEVVRSARTAPVGPTHAVDAATGAVVCGINTDA
Ga0137369_100765821	3300012355	Vadose Zone Soil	VRYKVGAERVEQVPPLAHRPDEVVRSARTAPVGPTHAVDAATGAVACG
Ga0137369_100822994	3300012355	Vadose Zone Soil	MRYKVGAEQVEQIPSLAHRPDGVFRSARTAPIGTTYAVDAATGAVALRDHGPQA*
Ga0137369_111097421	3300012355	Vadose Zone Soil	MRYKVGAEQLEQIPALAQRPDGVFRLARTAPVGPTHAVDAASGAVA
Ga0137368_106795062	3300012358	Vadose Zone Soil	MRYKVGAEQLEQVPSMTHRPDGTFRAARTAPIGPTHAVDAATGLVACGITTDG
Ga0157372_118101972	3300013307	Corn Rhizosphere	MRYMVGAEQLQQVPSLAHRPDTVFRVARTAPVGPTHAVCAVTGATVCGINTEALEVLN
Ga0157372_126134092	3300013307	Corn Rhizosphere	MRYKVGAEQLQQVPTLVHRPDTAFRASRTVPAGPTHAV
Ga0182000_103348231	3300014487	Soil	MRYKVEAEQLQQVPTLLHRPDTAFRASRTAPVGPTHAVSTRTGEAACGIRADGLEVLDQDWEEAFF
Ga0184620_103028651	3300018051	Groundwater Sediment	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCAATGAAACGIKADQLQVR
Ga0184621_102331431	3300018054	Groundwater Sediment	MRYKIGAEQLQQVPSLVHRPGTVFQVARTAPVGPTH
Ga0184617_11205671	3300018066	Groundwater Sediment	MRYKVGAEQLEHVPSLAHRPDSVFRVARTAPVGHTHA
Ga0184635_102179652	3300018072	Groundwater Sediment	MRYKIGAEQLQQVPTLLHRPDTTFRAGRVAPAGPTHAVSTRNGQAACGIT
Ga0184612_100396544	3300018078	Groundwater Sediment	MRYKVGAEQLQQVPSLAHRADGVFRVARTAPVGPTHA
Ga0224452_10239913	3300022534	Groundwater Sediment	MRYKVGAEQLERVPSLAHRPDGVFRGARTAPVGPTHAVDAT
Ga0222622_106864761	3300022756	Groundwater Sediment	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCA
Ga0207675_1020053351	3300026118	Switchgrass Rhizosphere	MRYKVGAEQLQQVPTLVHRPDTAFRASRTVPAGPTHAVST
Ga0209845_10492761	3300027324	Groundwater Sand	MRYKVGAEQLEQIPALAQRPDGVFRLARTAPVGPTHAVDATTGAAACGTVADGL
Ga0209874_11002341	3300027577	Groundwater Sand	MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGPTHAVDA
Ga0209382_104758291	3300027909	Populus Rhizosphere	MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGITVDGLEVLDQDWE
Ga0209859_10038445	3300027954	Groundwater Sand	MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGATHAVDTATGAVACGTQGHRLDVLDQDWE
Ga0209859_10741111	3300027954	Groundwater Sand	MRYKVGAEQMEQVPSLAHRPDGVFRAARTTPVGPTHAVNAATGTVACG
Ga0247828_111329972	3300028587	Soil	MRYKVGAEQLERVPAMAYRPGGVYRAPRIAAVGPA
Ga0247818_103047561	3300028589	Soil	MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTGVTVCG
Ga0307293_102476871	3300028711	Soil	MRYLVGVEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTGVTVCGIKAD
Ga0307293_102563141	3300028711	Soil	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCAST
Ga0307298_101507421	3300028717	Soil	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTH
Ga0307301_101661131	3300028719	Soil	MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTRRHHM
Ga0307317_101811801	3300028720	Soil	MRYKVGAEQLQQVPTLLHRPDTTFRAGRVAPAGPTHAVSTRNGQAACGITA
Ga0307315_102304472	3300028721	Soil	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCASTGAAACGIKADQLQVLDQD
Ga0307319_100661382	3300028722	Soil	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAPIGPTHAVCATTGATVCGIAGRLEVL
Ga0307319_101586982	3300028722	Soil	MLPGSEGGDAQMRYKVGAEQVEQVPSLAHRPDGVFRAPRTVPVGPTHAVDAATDVVACGIKTDG
Ga0307316_104008391	3300028755	Soil	MRYKIGAEQLQHVPSLAHRPDTVFRVARTAPVGPTHAVCVVTGTVVCGTKTDRLEVLD
Ga0307280_103425481	3300028768	Soil	MRYKVGAEQVEHVPSLAHRPDGVFRGVRTAPVGPTHAVDAGTGAAACGIKTH
Ga0307320_104141391	3300028771	Soil	MRYKVGAEHMEHVPSLAHRPDGVFRGVRAAPVGPTHAVDAATGAAACGIKTHGL
Ga0307288_103028241	3300028778	Soil	MLPGVGRWGLQMRYKVGAEQVEHVPSLAHRPDGVFRGVRTAPVGPTHAVDAATGAVACGIKTHGLD
Ga0247824_110824351	3300028809	Soil	MRDRVGAEQLQQVPSLAYRPDGGFRVARTAPVGPTHAVCATTGATVCGVKAEAGKLEVMNED
Ga0307292_100457441	3300028811	Soil	MRYKIGAEQLQHVPSLAHRPDTVFRVARTAPVGPTHAVCVVTGTVVCGTKTDRLEVLDQDWEAA
Ga0307302_100037581	3300028814	Soil	MLPGSDGGGAKVRYKVGAEQVEQVPSLAHRPDGVFRAARTAPVGPVDAATGAVACGI
Ga0307296_104913841	3300028819	Soil	MRYKVGAEQVEHVPSLAHRPDGVFRGVRTAPVGPTHAVDAGTGAAAC
Ga0307296_107357091	3300028819	Soil	MRYSLGAEQLQQVPSLVYRPDTVFRAARTAPVGPTHAVCAATGAVACGIKADRLQ
Ga0307289_102063172	3300028875	Soil	MRYKVGAEQLQQVPTLLHRPDTAFRAGRVAPAGPTHAVSTRTGQAACGIKAEGLAVLDQD
Ga0307286_100194606	3300028876	Soil	MRYMVGAEQLQQVPSLVHRPDGVFRVARTAPVGPTHAVCAVTGVTVCGIKADTLEVLNEDWEAAC
Ga0307286_100500332	3300028876	Soil	MRYKVGAEQVEHVPSLAHRPDGVFRVARTAPVGPTHAVGAATGAAA
Ga0307286_102268671	3300028876	Soil	MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVDATTGAAACGIKTHE
Ga0307277_101749531	3300028881	Soil	MRYKVGAEQVEHVPSLAHRPDGVFRVARTAPVGPTHAVDAATGAAACGIKTDGLEVLDQ
Ga0307277_104966252	3300028881	Soil	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCAATGA
Ga0307304_103364032	3300028885	Soil	MRYKVGAEQLQQVPTLLHRPDTAFRAGRVAPAGPTHAVSTRTGQAACGIKAEGLA
Ga0247826_103518691	3300030336	Soil	MRYMVGAEQLQQGPSLAHRPDGVFRVARTAAVGPTHAVCA
Ga0308187_100690053	3300031114	Soil	MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCASTGAAACGIKADQLQVLDQDWE
Ga0308187_102090262	3300031114	Soil	MRYKVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTAR
Ga0307408_1009045751	3300031548	Rhizosphere	MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGVKVDGLEVPDQD
Ga0307408_1020515881	3300031548	Rhizosphere	MRYKVGAEQLEHVPSLAHRPDGVFRVVRTAPVGPTHAVDAATGAAACGIKA
Ga0307405_116714251	3300031731	Rhizosphere	MRYNVGAEQLQQVPSLVHRPDTVFRAARTAPVGPTHAVCAATGAVACGIKGDRLQVL
Ga0307413_102555852	3300031824	Rhizosphere	MRYKVGAERLQQVPSLVHRPDTVFRAARTAPVGPTHAVCAATGAVACGIKA
Ga0307413_108906891	3300031824	Rhizosphere	MRYRVGAEQLQQVPTLLHRPDTAFRASRVAPAGPTHAVSTRTGK
Ga0307413_117413032	3300031824	Rhizosphere	VRYKVGAEHLEQVPSLAHRPDGVFRAARAAPVGPTHAVDAATGAVACGIKA
Ga0307410_101276051	3300031852	Rhizosphere	MRYKAEQLQQVPTFVHRPDTAFRASRTAPAGLTHAVSTRTGEAACG
Ga0307410_112490381	3300031852	Rhizosphere	MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGVKVDGLEVLDQD
Ga0307406_104355542	3300031901	Rhizosphere	MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEA
Ga0307406_113702432	3300031901	Rhizosphere	MRYKLGAEQIRQVPSLAHRPDRVFRVARTAPVGPTHAVCASTGATVCGVGTDTLQVLDED
Ga0307407_103303141	3300031903	Rhizosphere	MRYKVGAEQLQQVPTLLHRPDTAFRASRTAPAGPTHAVSTRTGEAACGV
Ga0307407_106266731	3300031903	Rhizosphere	MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGVKVDGLEVLD
Ga0307407_113220611	3300031903	Rhizosphere	MRYKVGAEQLQQVPTLVHRPDTAFRASRVAPAGPTHAVSTRTGEAACGITAA
Ga0307409_1027472601	3300031995	Rhizosphere	MRYQVGAEELERVPSMAHRPDGRFRLTRTTPVGPTHAVAMASDA
Ga0307416_1012497533	3300032002	Rhizosphere	MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVCARTGATVCGIKAEELEVLSED
Ga0307416_1032563001	3300032002	Rhizosphere	MRYKVGAEQLEQVPSMVRRPNGVFRSARITPIGPTHAVATASDAT
Ga0268251_100615812	3300032159	Agave	MRYKVGAEQLEQVPPLAHRPDGVFRPARTAPVGPTHAVDATSGAVACGITTEGLEVLDPA
Ga0247830_101575871	3300033551	Soil	MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTGVTICG
Ga0247830_103765624	3300033551	Soil	MRYKVGAEQLERVPAMAYRPGGVYRAPRIAPVGPAHAVD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094559

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign