Metagenome Family F094555

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094555
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	79 residues
Representative Sequence	MSAQRSELITASLAGAIDAWYHATRDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTMPLEDARERLAMVLGSQR
Number of Associated Samples	56
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.90 %
% of genes near scaffold ends (potentially truncated)	22.64 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.981 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (43.396 % of family members)
Environment Ontology (ENVO)	Unclassified (62.264 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.415 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.71% β-sheet: 23.36% Coil/Unstructured: 43.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.317.1.1: YkuJ-like	d2ffga1	2ffg	0.69206
d.3.1.20: M48USP-like	d2j7qa1	2j7q	0.67019
d.3.1.10: Avirulence protein Avrpph3	d1ukfa1	1ukf	0.60913
b.26.1.0: automated matches	d3kt9a_	3kt9	0.60006
f.69.1.1: Perfringolysin N-terminal-like	d3hvna3	3hvn	0.59891

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00072	Response_reg	2.83
PF13751	DDE_Tnp_1_6	2.83
PF01979	Amidohydro_1	1.89
PF13358	DDE_3	1.89
PF04392	ABC_sub_bind	0.94
PF08028	Acyl-CoA_dh_2	0.94
PF13592	HTH_33	0.94
PF01593	Amino_oxidase	0.94
PF14319	Zn_Tnp_IS91	0.94
PF00230	MIP	0.94
PF04224	DUF417	0.94
PF13551	HTH_29	0.94
PF13546	DDE_5	0.94
PF00916	Sulfate_transp	0.94
PF07077	DUF1345	0.94
PF12681	Glyoxalase_2	0.94
PF04366	Ysc84	0.94
PF16694	Cytochrome_P460	0.94
PF07885	Ion_trans_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.94
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.94
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.94
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.94
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.94
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.94
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.94
COG3059	Reactive chlorine resistance protein RclC/YkgB, DUF417 family	Defense mechanisms [V]	0.94
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
All Organisms	root	All Organisms	33.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
cellular organisms	root	All Organisms → cellular organisms	33.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.21 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.89 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.77 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.94 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.94 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.83 %
Thermomicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales	0.94 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.94 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.94 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	2.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.94 %
unclassified Thermomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales	0.94 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.94 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	2.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Thiocapsa bogorovii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	0.94 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.94 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.94 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	2.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Chondromyces	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Chondromyces	0.94 %
Thiocapsa bogorovii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	0.94 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.94 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	2.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.83 %
Chondromyces crocatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Chondromyces → Chondromyces crocatus	0.94 %
Thiocapsa bogorovii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	0.94 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.94 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_13033151	Not Available	687	Open in IMG/M
3300001431\|F14TB_102283608	Not Available	748	Open in IMG/M
3300004268\|Ga0066398_10009138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1402	Open in IMG/M
3300004633\|Ga0066395_10080835	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300005289\|Ga0065704_10302415	Not Available	882	Open in IMG/M
3300005332\|Ga0066388_101133644	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	1328	Open in IMG/M
3300005332\|Ga0066388_101300549	Not Available	1253	Open in IMG/M
3300005332\|Ga0066388_101501423	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300005332\|Ga0066388_101703736	Not Available	1115	Open in IMG/M
3300005332\|Ga0066388_102388019	Not Available	959	Open in IMG/M
3300005332\|Ga0066388_102717676	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300005564\|Ga0070664_101624298	Not Available	612	Open in IMG/M
3300005713\|Ga0066905_100090858	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300005713\|Ga0066905_100927312	Not Available	764	Open in IMG/M
3300005713\|Ga0066905_101458329	Not Available	621	Open in IMG/M
3300005713\|Ga0066905_101907857	Not Available	550	Open in IMG/M
3300005764\|Ga0066903_101099571	All Organisms → cellular organisms → Bacteria → Proteobacteria	1465	Open in IMG/M
3300005764\|Ga0066903_102123172	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005764\|Ga0066903_102827590	Not Available	942	Open in IMG/M
3300005764\|Ga0066903_106593323	Not Available	604	Open in IMG/M
3300005764\|Ga0066903_106830241	Not Available	593	Open in IMG/M
3300005764\|Ga0066903_106901146	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005937\|Ga0081455_10368519	Not Available	1007	Open in IMG/M
3300005983\|Ga0081540_1005812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	9129	Open in IMG/M
3300006049\|Ga0075417_10734467	Not Available	509	Open in IMG/M
3300006844\|Ga0075428_100045013	All Organisms → cellular organisms → Bacteria	4849	Open in IMG/M
3300006844\|Ga0075428_100706518	Not Available	1074	Open in IMG/M
3300006845\|Ga0075421_100262800	All Organisms → cellular organisms → Bacteria → Proteobacteria	2111	Open in IMG/M
3300006845\|Ga0075421_100396768	All Organisms → cellular organisms → Bacteria	1657	Open in IMG/M
3300006847\|Ga0075431_100820555	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300006853\|Ga0075420_100026478	All Organisms → cellular organisms → Bacteria → Proteobacteria	5192	Open in IMG/M
3300007076\|Ga0075435_100465828	Not Available	1090	Open in IMG/M
3300009100\|Ga0075418_11794572	Not Available	667	Open in IMG/M
3300009156\|Ga0111538_12551879	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300009553\|Ga0105249_11203978	Not Available	828	Open in IMG/M
3300009792\|Ga0126374_10544004	Not Available	846	Open in IMG/M
3300009792\|Ga0126374_11251909	Not Available	597	Open in IMG/M
3300010043\|Ga0126380_10093534	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Chondromyces → Chondromyces crocatus	1782	Open in IMG/M
3300010043\|Ga0126380_10095988	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	1764	Open in IMG/M
3300010043\|Ga0126380_10158593	Not Available	1461	Open in IMG/M
3300010043\|Ga0126380_10332066	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300010043\|Ga0126380_10799662	Not Available	771	Open in IMG/M
3300010043\|Ga0126380_11671343	Not Available	571	Open in IMG/M
3300010043\|Ga0126380_11700009	Not Available	567	Open in IMG/M
3300010046\|Ga0126384_10059161	All Organisms → cellular organisms → Bacteria	2677	Open in IMG/M
3300010046\|Ga0126384_10280147	Not Available	1362	Open in IMG/M
3300010046\|Ga0126384_10365936	Not Available	1207	Open in IMG/M
3300010046\|Ga0126384_10388867	Not Available	1174	Open in IMG/M
3300010046\|Ga0126384_10423068	Not Available	1130	Open in IMG/M
3300010046\|Ga0126384_10437831	Not Available	1113	Open in IMG/M
3300010047\|Ga0126382_10067112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2181	Open in IMG/M
3300010047\|Ga0126382_10069526	All Organisms → cellular organisms → Bacteria	2152	Open in IMG/M
3300010047\|Ga0126382_10230508	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300010047\|Ga0126382_10925557	Not Available	757	Open in IMG/M
3300010358\|Ga0126370_10963124	Not Available	776	Open in IMG/M
3300010358\|Ga0126370_12320872	Not Available	531	Open in IMG/M
3300010359\|Ga0126376_10412369	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300010359\|Ga0126376_10502041	Not Available	1123	Open in IMG/M
3300010359\|Ga0126376_10570087	Not Available	1064	Open in IMG/M
3300010359\|Ga0126376_12175458	Not Available	599	Open in IMG/M
3300010359\|Ga0126376_12488812	Not Available	565	Open in IMG/M
3300010360\|Ga0126372_10924601	Not Available	877	Open in IMG/M
3300010360\|Ga0126372_11078645	Not Available	820	Open in IMG/M
3300010361\|Ga0126378_10476201	Not Available	1363	Open in IMG/M
3300010362\|Ga0126377_10181148	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
3300010362\|Ga0126377_10435529	Not Available	1330	Open in IMG/M
3300010366\|Ga0126379_10052271	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3371	Open in IMG/M
3300010366\|Ga0126379_10483133	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300010366\|Ga0126379_10763924	Not Available	1064	Open in IMG/M
3300010366\|Ga0126379_12486165	Not Available	617	Open in IMG/M
3300010398\|Ga0126383_10177756	All Organisms → cellular organisms → Bacteria	2019	Open in IMG/M
3300010398\|Ga0126383_10436110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	1356	Open in IMG/M
3300010398\|Ga0126383_10809239	Not Available	1020	Open in IMG/M
3300010398\|Ga0126383_12457827	Not Available	606	Open in IMG/M
3300010863\|Ga0124850_1080150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	973	Open in IMG/M
3300012948\|Ga0126375_10190213	Not Available	1337	Open in IMG/M
3300012948\|Ga0126375_10593114	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9	845	Open in IMG/M
3300012948\|Ga0126375_11485452	Not Available	578	Open in IMG/M
3300012971\|Ga0126369_11396262	Not Available	790	Open in IMG/M
3300012971\|Ga0126369_11413403	Not Available	786	Open in IMG/M
3300012971\|Ga0126369_11938399	Not Available	677	Open in IMG/M
3300016294\|Ga0182041_11347294	Not Available	654	Open in IMG/M
3300016341\|Ga0182035_11690817	Not Available	572	Open in IMG/M
3300016341\|Ga0182035_11966224	Not Available	531	Open in IMG/M
3300016371\|Ga0182034_11565250	Not Available	578	Open in IMG/M
3300016445\|Ga0182038_10932847	Not Available	766	Open in IMG/M
3300026116\|Ga0207674_12279113	Not Available	504	Open in IMG/M
3300027873\|Ga0209814_10329313	Not Available	666	Open in IMG/M
3300027874\|Ga0209465_10045244	All Organisms → cellular organisms → Bacteria → Proteobacteria	2098	Open in IMG/M
3300027880\|Ga0209481_10375006	Not Available	728	Open in IMG/M
3300027907\|Ga0207428_10156904	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300027909\|Ga0209382_11109411	Not Available	816	Open in IMG/M
3300028889\|Ga0247827_11342632	Not Available	502	Open in IMG/M
3300031564\|Ga0318573_10256088	Not Available	933	Open in IMG/M
3300031719\|Ga0306917_10765169	Not Available	758	Open in IMG/M
3300031744\|Ga0306918_10618452	Not Available	849	Open in IMG/M
3300031819\|Ga0318568_10702034	Not Available	629	Open in IMG/M
3300031912\|Ga0306921_11230268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	832	Open in IMG/M
3300031912\|Ga0306921_11800177	Not Available	659	Open in IMG/M
3300031947\|Ga0310909_10995858	Not Available	685	Open in IMG/M
3300031954\|Ga0306926_12299740	Not Available	597	Open in IMG/M
3300032001\|Ga0306922_11222578	Not Available	764	Open in IMG/M
3300032059\|Ga0318533_10385380	Not Available	1023	Open in IMG/M
3300032261\|Ga0306920_103040643	Not Available	632	Open in IMG/M
3300033551\|Ga0247830_10370431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1110	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.13%
Host-Associated	Host-Associated	18.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.13%
Plants	Host-Associated → Plants	18.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.32%
Loam	Environmental → Terrestrial → Soil → Loam	19.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.15%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	43.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_130331512	3300000789	Soil	MSXQRFDRITASLAGAIDAWYNATIDGDTAXITLPDAPAXYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSQ*
F14TB_1022836082	3300001431	Soil	MSAQRFDLITASLAGAIDAWYNATLDGDTAIITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSQ*
Ga0066398_100091382	3300004268	Tropical Forest Soil	MSAQQSRLTSAHLVDAIDAWYAATTDGATTVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR*
Ga0066395_100808351	3300004633	Tropical Forest Soil	SHAEDVPMSAQPSRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR*
Ga0065704_103024151	3300005289	Switchgrass Rhizosphere	MSAQRFELITASLAGAIDAWYNATIDGDTAIITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSQ*
Ga0066388_1011336441	3300005332	Tropical Forest Soil	MSTQRFDLITASRAGAIDAWYNATIDGDTAIITLPDAPAISLIHQPHEQVRWRTEGRKGLTIPLKDARERLAMVLGSQ*
Ga0066388_1013005492	3300005332	Tropical Forest Soil	MSAQPSRLTTANLADTIDAWYAATTDGDITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLAMPLTEARQRLAMVLGR*
Ga0066388_1015014233	3300005332	Tropical Forest Soil	MSATIQLSTANLASALDAWYSGTTDGDTAVLTLPDEPAIYLIHQPRGQVRWRTEGRKGLTISLENARERMAMVLGRP*
Ga0066388_1017037361	3300005332	Tropical Forest Soil	MSAQHSKPMTASLAGAINTWYAATTDGDTAVITLPDAPAISLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0066388_1023880192	3300005332	Tropical Forest Soil	MSVQRPQRTTAHLASAIDAWYAATTDGDIAVITLPDTPAIYLTHQPHEQVRWRTAGRKGLTMPLTDARARLAMVLSR*
Ga0066388_1027176763	3300005332	Tropical Forest Soil	MSAQRSELITASHAGAIDAWYNATRDGDTAVITLPDAPAIYLIHQPREQVRWRTEGRKGLTIPLEDARERLAMELGSQR*
Ga0070664_1016242981	3300005564	Corn Rhizosphere	ARSACALGQPPDGTLPHAEEVSMSAQRSARITASLADTLDAWYHATSDGDTAVITLPDAPAIYLLHQPHEQVRWRTEGRKGLTIPLEDARKRLAMVLGNAPPVQHCAFSPGKPGG*
Ga0066905_1000908584	3300005713	Tropical Forest Soil	MRAQRSAFITASLAGAIDAWYNATIDGDTAVITLPDAPTIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGRPR*
Ga0066905_1009273121	3300005713	Tropical Forest Soil	MSTQRFDRITASLAGAIDAWYNATIDGDTAIITLPDAPAIYLIHQPHAHVRWRTEGRKGLTMPLEDARERL
Ga0066905_1014583291	3300005713	Tropical Forest Soil	MSATIQLSTANLASALDAWYSATTDGDTAVLTLPDEPAIYLIHQPRGQVRWRTEGRKGLTISLENARERMAMVLGRP*
Ga0066905_1019078571	3300005713	Tropical Forest Soil	MSAQWSQLTTANLAGAIDAWYAATTDGDTTVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTIPLTDVRERLAMVLGSQR*
Ga0066903_1010995712	3300005764	Tropical Forest Soil	MSAQRSEVITARRAGAIDAWYHATIDGDTAVILLPDAPAIYLIHQPHEQVRWRTEGRKGLTIALEDARERLAMVQGSQREAKVTCPQI*
Ga0066903_1021231722	3300005764	Tropical Forest Soil	MSTQRSAGVTARLAGAIDAWYHATIDGDTVVITLPDAPAIYLIHQQHEQVRWRTEGRKGLTISLEDARERLAMVLGSQREAKVTYPHK*
Ga0066903_1028275901	3300005764	Tropical Forest Soil	MTASLAGAIDAWYAATTDGAPAVLTLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADTRERLAMVLGSQ*
Ga0066903_1065933231	3300005764	Tropical Forest Soil	SRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR*
Ga0066903_1068302412	3300005764	Tropical Forest Soil	MSAQRSQLTTANLADAIDTWYAATTDGDTVVITLPDTPAIYLTHQPHEQVRWRTAGRKGLTIPLPDARERLAMVLGSQR*
Ga0066903_1069011461	3300005764	Tropical Forest Soil	IAPDWASPQAEDLSMSAQHPQPMTASLASAIDAWYAATTDGDTTIITLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0081455_103685191	3300005937	Tabebuia Heterophylla Rhizosphere	MSAQQSRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR*
Ga0081540_100581210	3300005983	Tabebuia Heterophylla Rhizosphere	MSTQRFDLITASLAGAIDVWYNATIDGDTAIITLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLENARERLMMVLGSQR*
Ga0075417_107344671	3300006049	Populus Rhizosphere	MSAQRSERITASFAGTIDAWYNATSDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSQ*
Ga0075428_1000450131	3300006844	Populus Rhizosphere	MSAQRSERITASFAGTIDAWYNATSDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSGPPLATSR
Ga0075428_1007065181	3300006844	Populus Rhizosphere	MSAQRSQLTTAHLASAIDAWYAATTDGDTAVLTLPDAPAIYLTHQPHEQVRWRTAGRKGLTMPLTDARARLAMVLGRQRSAQVGSLA*
Ga0075421_1002628003	3300006845	Populus Rhizosphere	MSAQRSERITASLAGTLDAWYHATGDGDTAVITLPEAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDAGKRLAMVLGSGPPLATSRL*
Ga0075421_1003967682	3300006845	Populus Rhizosphere	MSAQRSERITASFAGTIDAWYNATSDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSGPPLATSRF*
Ga0075431_1008205551	3300006847	Populus Rhizosphere	MSAQRSQLTTAHLASAIDAWYAATTDGDTAVLTLPDAPAIYLTHQPHEQGRWRTAGRKGLTLPLTDACAR
Ga0075420_1000264781	3300006853	Populus Rhizosphere	MSAQRSERITASFAGTIDAWYNATRDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSGPPLATSRF*
Ga0075435_1004658283	3300007076	Populus Rhizosphere	QRSERITASLADTLDAWYHATSDGDTAVITLPDAPAIYLLHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSQ*
Ga0075418_117945721	3300009100	Populus Rhizosphere	MSAQRSQLTTAHLASAIDAWYAATTDGDTAVLTLPEAPAIYLTHQPHEQVRWRTAERKELTMPLTEARARLAMILGR*
Ga0111538_125518792	3300009156	Populus Rhizosphere	MSAQRSERITASLAGTLDAWYHATGDGDTAVITLPEAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDA
Ga0105249_112039781	3300009553	Switchgrass Rhizosphere	MSAQRFELITASLAGAIDAWYNATIDGDTAIITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDAHERLAMVLGSQ*
Ga0126374_105440042	3300009792	Tropical Forest Soil	MSTQRFDLITASLADAIDAWYNATIDGDIAIITLPDAPAIYLIHQPHEHVRWRTEGRKGLTIPLEDARERLAMVLGRQR*
Ga0126374_112519091	3300009792	Tropical Forest Soil	MSTQHPQPITARLAGAIDAWYAATTDGDTAVITLPDAPAISLTHQPHAQVRWRTEGRKGLTIPLADARERLRVGWSSPSCP
Ga0126380_100935341	3300010043	Tropical Forest Soil	MSAQRSERITASFAGTIDAWYNATRDGDTAVITLPDAPAIYLIHQPHARVRWRTEGRKGLTIPLEDARERLAMVLGSQ*
Ga0126380_100959882	3300010043	Tropical Forest Soil	MSTQRFDLITASRAGAIDAWYNATIDGDTAIITLPDAPAISLIHQPHEHVHWRTEGRKGLTIPLKDARERLAMVLGSQ*
Ga0126380_101585933	3300010043	Tropical Forest Soil	MPASLAGAIDAWYAATTDGDTAVITLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0126380_103320661	3300010043	Tropical Forest Soil	MSAQRSQLTTANLADAIDTWYAATTDGDTVVITLPDTPAIYLTHQPHQQLRWRTSGRKGLTIPLTDARERRAMVLGSQR*
Ga0126380_107996622	3300010043	Tropical Forest Soil	MSAQRSQLTTAHLASAIDAWYAVTTDGDTAVLTLPDAPAIYLTHQPHAQVRWRTAGRKGLTLPLTDACARLAMVLGRTGIVS*
Ga0126380_116713431	3300010043	Tropical Forest Soil	MSAQRSELITASHAGAIDAWYNATRDGDTAVITLPDAPAIYLIHQPHARVRWRTEGRKGLTMPLEDARERLAMVLGR
Ga0126380_117000092	3300010043	Tropical Forest Soil	MSAPWSQLTTANRAGAIDAWYAATTDGDTTVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTDVRERLARVLGSQR*
Ga0126384_100591614	3300010046	Tropical Forest Soil	MSAQQSRLTTAHLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARERLAMVLGR*
Ga0126384_102801473	3300010046	Tropical Forest Soil	MSAQRSQLTTANLADAIDIWYAATTDGDTVVITLPDTPAIYLTHQPHEQVRWRTAGRKGLTIPLPDARERLAMVLGSQR*
Ga0126384_103659362	3300010046	Tropical Forest Soil	MSAQPSRLTTANLADTIDAWYAATTDGDITVITLPDAPAIYLTHQLHAQVRWQTAGRKGLTMPLTEARQRLAMVLGR*
Ga0126384_103888671	3300010046	Tropical Forest Soil	MSATIQLSTANLASALDAWYSATTDGDTAVLTLPDEPAIYLIHQPRGQVRWRTEGRKGLTISLENARERLAMVLGRP*
Ga0126384_104230682	3300010046	Tropical Forest Soil	MSAQRSERITASHAGAIDAWYNATRDGDTAVITLPDAPAIYLIHQPHARVRWRTEGRKGLTIPLEDARERLAMVLGSQR*
Ga0126384_104378311	3300010046	Tropical Forest Soil	MTASLAGAIDAWYAATTDGDTAVITLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0126382_100671122	3300010047	Tropical Forest Soil	MSAQQSRLTSAHLVDAIDAWYAATTDGATTVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARQRLAMVLGR*
Ga0126382_100695264	3300010047	Tropical Forest Soil	MSAQRPQLTTAHLASAIDAWYAATTDGDTAVITLPDTPAIYLTHQPHEQVRWRTAGRKGLTIPLPDARERLAMVLGSQR*
Ga0126382_101898461	3300010047	Tropical Forest Soil	DAWYNATRDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSQR*
Ga0126382_102305081	3300010047	Tropical Forest Soil	MSAQRSERITASFAGTIDAWYNATRDGDTAVITLPDAPAIYLIHQPHAQVRWRTEGRKGLTMPLEDARERLAMVLGSQ*
Ga0126382_109255571	3300010047	Tropical Forest Soil	MTAQRPPLTTASLAGAIDAWYASATDGDTAVITIPDAPAIYLVHQPHEQVRWRTQGRKGLTISLADARERLAMV
Ga0126370_109631241	3300010358	Tropical Forest Soil	MSAQPSRLTTANLADMIDAWYAATTDGDITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARQRLAMVLGR*
Ga0126370_123208722	3300010358	Tropical Forest Soil	RSQLTTANLADAIDTWYAATTDGDTVVITLPDTPAIYLTHQPHEQVRWRTAGRKGLTIPHPDARKRLAMVLGSQR*
Ga0126376_104123692	3300010359	Tropical Forest Soil	MSAQHPQPITARLAGAIDAWYAATTDGDTTIITLPDAPAISLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0126376_105020412	3300010359	Tropical Forest Soil	MSAQPSRLTTANLADTIDAWYAATTDGDITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARERLAMVLGR*
Ga0126376_105700872	3300010359	Tropical Forest Soil	MTASLAGAIDAWYTATTDGDTAVITLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0126376_121754582	3300010359	Tropical Forest Soil	MTAQRPPLTTASLAGAIDAWYASATDGDTAVITIPDAPAIYLVHQPHEQVRWRTQGRKGLTISLADARERLAMVLGRP*
Ga0126376_124888121	3300010359	Tropical Forest Soil	MSAQRSQLTTANLAEAIDTWYAATTDADTVVIPLPDTPAIYLTHQPREQVRWRTAGRKGLTIPLPDARERLAMVLSSQR*
Ga0126372_109246011	3300010360	Tropical Forest Soil	MSAQPSRLTTANLADTIDAWYAATTAGDITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARQRLAMVLGR*
Ga0126372_110786452	3300010360	Tropical Forest Soil	MSAQRSQLTTANLADAIDTWYAATTDGDTVVITLPDTPAIYLTHQPHEQVRWRTAGRKGLTIPLPDARERLAMVLGSQS*
Ga0126378_104762012	3300010361	Tropical Forest Soil	MSAQRSELITASLAGAIDAWYHATRDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTMPLEDARERLAMVLGSQR*
Ga0126377_101811482	3300010362	Tropical Forest Soil	MRAQRSELITASHAGAIDAWYNTTRDGDTAVITLPDAPAIYLIHQPHAQVRWRTEGRKGLTMPLEDARERLAMVLGSGPPLAPSRF*
Ga0126377_104355291	3300010362	Tropical Forest Soil	MSAQRSELITASLAGAIDAWYTATIDGDTAIITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARARLAMVLGSGPPLVTSRF*
Ga0126379_100522714	3300010366	Tropical Forest Soil	MSAQPSRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR*
Ga0126379_104831331	3300010366	Tropical Forest Soil	AGAIDAWYHATIDGDTVVITLPDAPAIYLIHQPHAQVRWRTEGRKGLTISLEDARERLAMVLGS*
Ga0126379_107639241	3300010366	Tropical Forest Soil	MSAQRSELITASHAGAIDAWYNATRDGDTAVITLPDAPAIYLIHQPHAQVRWRTEGRKGLTIPLEDARERLAMVLERQR*
Ga0126379_124861651	3300010366	Tropical Forest Soil	MSTQSSQLTTANRAGALDAWYAATTDGDTTVITLPDAPAIYLTHQPREQVRWRTAGRKGLTIPLTDARERLAMVLALQPRAPEILR*
Ga0126383_101777561	3300010398	Tropical Forest Soil	MTAQWPPLTTASLAGAIDAWYASATDGDTAVITIPDAPAIYLVHQPHEQVRWRTQGRKGLTISLADARERLAMVLGRP*
Ga0126383_104361102	3300010398	Tropical Forest Soil	MSAQHPQPMTASLASAIDAWYAATTDGDTTIITLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0126383_108092393	3300010398	Tropical Forest Soil	MSAQRSQLTTANLADAIDIWYAATTDGDTVVITLPDTPAIYLTHQPHEQVRWRTAERKGLTIPLPDARERLAMVLGSQR*
Ga0126383_124578271	3300010398	Tropical Forest Soil	MHAEEVSMHAPQAQLTPATLAGTIDAWYAATTDGDTTVITLPDTPAIYLTHQPHAQVRWRTAGRKGLTMPLTEACARLAMVLGR*
Ga0124850_10801502	3300010863	Tropical Forest Soil	LGFAASRGSLDERATPQPMTASLAGAIDAWYAATTDGAPAVLTLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADTRERLAMVLGSQ*
Ga0126375_101902131	3300012948	Tropical Forest Soil	MSAQRSELITASHAGAIDAWYNATIDGDTAVITLPDAPAIYLIHQPHAQVRWRTEGRKGLTIPLEDARERLAMVLERQR*
Ga0126375_105931141	3300012948	Tropical Forest Soil	MSTQRFDLITASRAGAIDAWYNATIDGDTAIITLPDAPAISLIHQPHAHVRWRTEGRKGLTMPLKDARERLAMVLGSQ*
Ga0126375_114854521	3300012948	Tropical Forest Soil	PCLYSAYAEEVSMSAQRSELITASHAGAIDAWYNATRDGDTAVITLPDAPAIYLIHQPHARVRWRTEGRKGLTIPLEDARERLAMVLGSQR*
Ga0126369_113962621	3300012971	Tropical Forest Soil	MTASLAGAIDAWYAAITDGDTAVITLPDAPAIYLTHQPHEQVRWRTEGRKGLTIPLADARERLAMVLGSQ*
Ga0126369_114134031	3300012971	Tropical Forest Soil	TTANLADTIDAWYAATTDGDITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARERLAMVLGR*
Ga0126369_119383992	3300012971	Tropical Forest Soil	MHAAEVSMDAQRSQLTPATLAGAIDAWYAATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGRG*
Ga0182041_113472941	3300016294	Soil	MSTQRVDLITASRAGAIDAGYNATIDGDTAIITLPDAPAISLIHQPHEQVRWRTEGRKGLTIPLKDARKRLAMVLGSQ
Ga0182035_116908171	3300016341	Soil	MDAQRSQLTRATLAGAIDAWYTATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMILGR
Ga0182035_119662241	3300016341	Soil	AEEVSVVAQSSQITRATLAGAIDAWYTATTDGNTTVITLPEAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGRG
Ga0182034_115652501	3300016371	Soil	MDAQRSQLTPATLASAIDAWYAATTDGATTVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLPEARARLAMVLGRG
Ga0182038_109328471	3300016445	Soil	MDAQRSQLTRATLAGAIDAWYAATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR
Ga0207674_122791131	3300026116	Corn Rhizosphere	MSAQRSARITASLADTLDAWYHATSDGDTAVITLPDAPAIYLLHQPHEQVRWRTEGRKGLTIPLEDARKRLAMVLGNAPPVQHCAFSPGKPGG
Ga0209814_103293131	3300027873	Populus Rhizosphere	MSAQRSERITASLAGTLDAWYHATGDGDTAVITLPEAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDAGKRLAMVLGSGPPLATSRL
Ga0209465_100452442	3300027874	Tropical Forest Soil	MSAQPSRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR
Ga0209481_103750061	3300027880	Populus Rhizosphere	MSAQRFELITASLAGAIDAWYNATIDGDTAIITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSQ
Ga0207428_101569043	3300027907	Populus Rhizosphere	MSAQRSERITASFAGTIDAWYNATRDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSGPPLATSRF
Ga0209382_111094112	3300027909	Populus Rhizosphere	MSAQRSERITASFAGTIDAWYNATSDGDTAVITLPDAPAIYLIHQPHEQVRWRTEGRKGLTIPLEDARERLAMVLGSGPPLATSRF
Ga0247827_113426322	3300028889	Soil	MSAQRSARITASLAGAIDAWYTATRDGDTAVITLPEAPAIYLIHQPHEQVRWRTEGRKGLTIPLEEARERLAMVLG
Ga0318573_102560882	3300031564	Soil	MDAQRSQLTRATLAGAIDAWYTATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGCKGLTMPLTEARARLAMVLGRG
Ga0306917_107651692	3300031719	Soil	MSAQQSRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGR
Ga0306918_106184521	3300031744	Soil	MDAEEVSMDAQRSQLTRATLAGAIDAWYTATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGCKGLTMPLTEARARLAMVLGRG
Ga0318568_107020341	3300031819	Soil	QLTRATLAGAIDAWYTATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGRG
Ga0306921_112302681	3300031912	Soil	MSAQQSRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARL
Ga0306921_118001771	3300031912	Soil	RSPNSPTTSIPNIPHRGQLTPATLAGAIDAWYAATTDGATTVITLPEAPAIYLTHQPHAQVRWRTAGRKGLTLPLPEARARLAMVLGRG
Ga0310909_109958581	3300031947	Soil	MDAQRSQLTRATLAGAIDAWYAATTDGDTTVITLPKAPAIYLTHQPHAQVRWRTAGRKGLTMPLPEARARLAMVLGRG
Ga0306926_122997401	3300031954	Soil	MSAQQSRLTTANLADAIDAWYAATTDGAITVITLPDAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGRG
Ga0306922_112225781	3300032001	Soil	AQRSQLTRATLAGAIDAWYAATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGRKGLTMPLTEARARLAMVLGRG
Ga0318533_103853802	3300032059	Soil	MDAEEVSMDAQRSQLTRATLAGAIDAWYAATTDGDTTVITLPEAPAIYLTHQPHAQVRWRTAGCKGLTMPLTEARARLAMVLGRG
Ga0306920_1030406431	3300032261	Soil	MSAQQSRLTSAHLADAIAAWYAATTDGATTVITLPDAPAIYLTHQPHEQVRWRTAGRKGLTMPLTEARERLAMVLGR
Ga0247830_103704311	3300033551	Soil	MSAQRSARITASLAGAIDAWYTATRDGDTAVITLPEAPAIYLIHQPHEQVRWRTEGRKGLTIPLEEARERLAMVLGSGPPLATSRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094555

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences