Metagenome / Metatranscriptome Family F094431

Basic Information
Family ID	F094431
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	63 residues
Representative Sequence	MGMDRSTLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLF
Number of Associated Samples	80
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	92.23 %
% of genes near scaffold ends (potentially truncated)	26.42 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (52.830 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.472 % of family members)
Environment Ontology (ENVO)	Unclassified (29.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.113 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.82% β-sheet: 0.00% Coil/Unstructured: 61.18%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00313	CSD	1.89
PF00589	Phage_integrase	1.89
PF04964	Flp_Fap	0.94
PF00486	Trans_reg_C	0.94
PF12844	HTH_19	0.94
PF01609	DDE_Tnp_1	0.94
PF01068	DNA_ligase_A_M	0.94
PF11154	DUF2934	0.94
PF00816	Histone_HNS	0.94
PF03992	ABM	0.94
PF00484	Pro_CA	0.94
PF02219	MTHFR	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.94
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	0.94
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.94
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.94
COG2916	DNA-binding protein H-NS	Transcription [K]	0.94
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.94
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.94
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.94
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.94
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.94
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
All Organisms	root	All Organisms	47.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
cellular organisms	root	All Organisms → cellular organisms	47.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	27.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	21.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.83 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.89 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.94 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig46446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	887	Open in IMG/M
2166559005\|cont_contig49708	Not Available	874	Open in IMG/M
2170459005\|F1BAP7Q01A7J2T	Not Available	501	Open in IMG/M
2170459009\|GA8DASG02F9G0G	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	503	Open in IMG/M
2170459011\|GI3SL7401C2SH0	Not Available	510	Open in IMG/M
2170459013\|GO6OHWN02JQTLG	Not Available	512	Open in IMG/M
3300001431\|F14TB_100066484	Not Available	855	Open in IMG/M
3300001593\|JGI12635J15846_10702011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	583	Open in IMG/M
3300001661\|JGI12053J15887_10541929	Not Available	555	Open in IMG/M
3300004643\|Ga0062591_102810832	Not Available	516	Open in IMG/M
3300005329\|Ga0070683_101285629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	703	Open in IMG/M
3300005334\|Ga0068869_101645845	Not Available	572	Open in IMG/M
3300005347\|Ga0070668_101953933	Not Available	541	Open in IMG/M
3300005440\|Ga0070705_100786115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	756	Open in IMG/M
3300005456\|Ga0070678_100241989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1509	Open in IMG/M
3300005555\|Ga0066692_10144754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1454	Open in IMG/M
3300006038\|Ga0075365_10079240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2223	Open in IMG/M
3300006163\|Ga0070715_10973520	Not Available	527	Open in IMG/M
3300006173\|Ga0070716_101367063	Not Available	575	Open in IMG/M
3300007258\|Ga0099793_10710921	Not Available	507	Open in IMG/M
3300009143\|Ga0099792_10223702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1082	Open in IMG/M
3300010397\|Ga0134124_12994397	Not Available	516	Open in IMG/M
3300012189\|Ga0137388_11340332	Not Available	655	Open in IMG/M
3300012203\|Ga0137399_10613031	Not Available	915	Open in IMG/M
3300012203\|Ga0137399_11362110	Not Available	595	Open in IMG/M
3300012205\|Ga0137362_11600750	Not Available	538	Open in IMG/M
3300012212\|Ga0150985_105948978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	779	Open in IMG/M
3300012212\|Ga0150985_115282612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300012212\|Ga0150985_116348337	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300012357\|Ga0137384_10065680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3010	Open in IMG/M
3300012469\|Ga0150984_106837376	Not Available	536	Open in IMG/M
3300012469\|Ga0150984_112694000	Not Available	644	Open in IMG/M
3300012469\|Ga0150984_113199541	Not Available	538	Open in IMG/M
3300012469\|Ga0150984_116879173	Not Available	548	Open in IMG/M
3300012582\|Ga0137358_10474170	Not Available	844	Open in IMG/M
3300012685\|Ga0137397_10470635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	936	Open in IMG/M
3300012923\|Ga0137359_10788082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	824	Open in IMG/M
3300012923\|Ga0137359_10938936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300012924\|Ga0137413_10391038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	997	Open in IMG/M
3300012924\|Ga0137413_10564596	Not Available	847	Open in IMG/M
3300012924\|Ga0137413_11149662	Not Available	616	Open in IMG/M
3300012925\|Ga0137419_11424552	Not Available	585	Open in IMG/M
3300012930\|Ga0137407_11163998	Not Available	732	Open in IMG/M
3300012951\|Ga0164300_10120509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1185	Open in IMG/M
3300012955\|Ga0164298_10858032	Not Available	656	Open in IMG/M
3300012955\|Ga0164298_11347054	Not Available	549	Open in IMG/M
3300012957\|Ga0164303_10280696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	971	Open in IMG/M
3300012960\|Ga0164301_10395071	Not Available	966	Open in IMG/M
3300012960\|Ga0164301_10427550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300012961\|Ga0164302_10007178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4151	Open in IMG/M
3300012961\|Ga0164302_10041835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	2204	Open in IMG/M
3300012984\|Ga0164309_10552391	Not Available	891	Open in IMG/M
3300012985\|Ga0164308_10145811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1741	Open in IMG/M
3300012986\|Ga0164304_10027404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2861	Open in IMG/M
3300012987\|Ga0164307_11393709	Not Available	590	Open in IMG/M
3300012989\|Ga0164305_10328925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1142	Open in IMG/M
3300012989\|Ga0164305_10349963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1112	Open in IMG/M
3300013296\|Ga0157374_10085515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2999	Open in IMG/M
3300013297\|Ga0157378_12775050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	542	Open in IMG/M
3300014501\|Ga0182024_10341487	All Organisms → cellular organisms → Bacteria	1960	Open in IMG/M
3300014969\|Ga0157376_11090513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	824	Open in IMG/M
3300015241\|Ga0137418_10842567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300015241\|Ga0137418_10865484	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300015241\|Ga0137418_10915595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	643	Open in IMG/M
3300015245\|Ga0137409_11395719	Not Available	545	Open in IMG/M
3300015371\|Ga0132258_11359322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1795	Open in IMG/M
3300015371\|Ga0132258_11866913	Not Available	1513	Open in IMG/M
3300015373\|Ga0132257_103956088	Not Available	539	Open in IMG/M
3300015374\|Ga0132255_100944101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1291	Open in IMG/M
3300018476\|Ga0190274_10228526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	1665	Open in IMG/M
3300018476\|Ga0190274_10393275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1340	Open in IMG/M
3300018476\|Ga0190274_10439699	Not Available	1281	Open in IMG/M
3300018476\|Ga0190274_11174409	Not Available	850	Open in IMG/M
3300018481\|Ga0190271_11526236	Not Available	785	Open in IMG/M
3300019268\|Ga0181514_1605073	Not Available	648	Open in IMG/M
3300019889\|Ga0193743_1118467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	960	Open in IMG/M
3300020199\|Ga0179592_10416062	Not Available	585	Open in IMG/M
3300021315\|Ga0179958_1182511	Not Available	727	Open in IMG/M
3300022508\|Ga0222728_1098542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	551	Open in IMG/M
3300022510\|Ga0242652_1038709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	573	Open in IMG/M
3300022726\|Ga0242654_10205285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	687	Open in IMG/M
3300022726\|Ga0242654_10341222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	561	Open in IMG/M
3300025939\|Ga0207665_11330431	Not Available	573	Open in IMG/M
3300026285\|Ga0209438_1046558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1431	Open in IMG/M
3300026304\|Ga0209240_1017938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2703	Open in IMG/M
3300026320\|Ga0209131_1031029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3131	Open in IMG/M
3300026514\|Ga0257168_1154306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	512	Open in IMG/M
3300027678\|Ga0209011_1225443	Not Available	503	Open in IMG/M
3300029636\|Ga0222749_10317595	Not Available	809	Open in IMG/M
3300030969\|Ga0075394_11519103	Not Available	871	Open in IMG/M
3300030988\|Ga0308183_1120219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	619	Open in IMG/M
3300031057\|Ga0170834_113832510	Not Available	542	Open in IMG/M
3300031093\|Ga0308197_10217254	Not Available	660	Open in IMG/M
3300031093\|Ga0308197_10343193	Not Available	566	Open in IMG/M
3300031231\|Ga0170824_103228587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1166	Open in IMG/M
3300031231\|Ga0170824_108947495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1017	Open in IMG/M
3300031366\|Ga0307506_10262174	Not Available	662	Open in IMG/M
3300031456\|Ga0307513_10337743	Not Available	1258	Open in IMG/M
3300032002\|Ga0307416_101184031	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300032174\|Ga0307470_10074983	Not Available	1843	Open in IMG/M
3300032180\|Ga0307471_102552732	Not Available	647	Open in IMG/M
3300034447\|Ga0370544_17355	Not Available	572	Open in IMG/M
3300034644\|Ga0370548_113105	Not Available	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.30%
Host-Associated	Host-Associated	19.81%
Engineered	Engineered	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.36%
Plants	Host-Associated → Plants	19.81%
Modeled	Engineered → Modeled	1.89%
Aquatic	Environmental → Aquatic	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.49%
Roots	Host-Associated → Plants → Roots	1.89%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	1.89%
Freshwater	Environmental → Aquatic → Freshwater	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.92%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.60%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	1.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.94%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459011	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect Gram positive lysis 0-10cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021315	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_2_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034447	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0446.00003600	2166559005	Simulated	MGIFMDRSNLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLFEPHWARAD
cont_0708.00003660	2166559005	Simulated	MGRSALPSADRSTVWLADLIETTEAVAASTKTCDPAIVKAFSHRLQTHADIRPLFERIGIGG
E41_01334820	2170459005	Grass Soil	MGIFMDRSILPSADPSTVWLADLIEATEAVAASAEPCDPAIVKAFSHRLELRADVRPLFEPHWARAD
F47_02222300	2170459009	Grass Soil	MGRSASPGADPSTVWLADLIEATEVLAASVEPCDPAIMQAFIKRLEKHADVRPLAFAQER
F64_05485090	2170459011	Grass Soil	MGIFMDRSNLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLFEPPRWALAD
N57_00416750	2170459013	Grass Soil	MGRSALPSTDRSAVWLADLIEATQIAAASAEPCDAAIVKAFSHRLEMRNDVRPLSKQARMSTSG
F14TB_1000664843	3300001431	Soil	LPSADPSTVWLADLIEATEVVAASAKPCDPVIVKAFRHRLETRADVRRHLDPAFALL*
JGI12635J15846_107020112	3300001593	Forest Soil	ALMGSSALPSADRSSVWLADLIAATEAVVASAQPCDPAIVKAFSHRLEMRTDVRTLREPVRMSTGT*
JGI12053J15887_105419291	3300001661	Forest Soil	MGRSALPSADLRTAWLADLIEATEVVAASAEVCDPEIIKAFGHRLEMSADIRPPFEPGHTGTGT*
Ga0062591_1028108322	3300004643	Soil	MGMERFTLRSADPSTVWLADLIRATEAVAAFSAEPCDPAAVKAFSHRLEMRTDVRPLLDIVRTSNNW*
Ga0070683_1012856292	3300005329	Corn Rhizosphere	MDRSTLPSADPSTVWLADLIEAAEVLAAFAEPCDPAIMQAFSSRLEMHADVRSLALSQER
Ga0068869_1016458451	3300005334	Miscanthus Rhizosphere	MGRSVPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETRADCPAAP*SGV
Ga0070668_1019539332	3300005347	Switchgrass Rhizosphere	MGILMDRSTLPSADPSTVWLADLIEAAEVLAVSAEPCDPAIVKAFGHRLEMRADVRPLFDPARMGADSVS*
Ga0070705_1007861151	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDIFMDRSNLPSADPSTVWLADLIEATEVLAASAEPCDPAIMKAFSNRLAMRAD
Ga0070678_1002419891	3300005456	Miscanthus Rhizosphere	PSTVWLADLIEAAEVLAAFAEPCDPAIMQAFSSRLEMHADVRSLALSQER*
Ga0066692_101447543	3300005555	Soil	MGMDRSIFPSTDRSIAWLANLIEATEVVATSGKRCDPAIVRAFSHRLEMRADFGRCS
Ga0075365_100792405	3300006038	Populus Endosphere	MGMERFTLPSADPSTIWLADLIRATEVVAAFSAEPCDPAAVKAFSHRLEMRTNLRPLLDIAH*
Ga0070715_109735202	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	RRVSDALMGIFMDRSNLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETRADCPAAP*
Ga0070716_1013670631	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGIFMDRSTLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETRADCPAAP*
Ga0099793_107109211	3300007258	Vadose Zone Soil	MDRSILPSADPSTVWLADLIEATEVVAASAEPCDPAIVTAFSHRLELRADVRPLF
Ga0099792_102237023	3300009143	Vadose Zone Soil	MGMDRSILPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLFEPPWARAD*
Ga0134124_129943972	3300010397	Terrestrial Soil	MGIFMDRSTLPGADPSTVWLADLIEATEVVAASAKPCDPVIVKAFRHRLETRADVRRHLDPAFAQL*
Ga0137388_113403322	3300012189	Vadose Zone Soil	MAIFMDRSTLPSADPSTVWLADLIEAAEAVTASAEPCDPAIVKAFSHRLELRADVRPLFEPPWARAD*
Ga0137399_106130312	3300012203	Vadose Zone Soil	MGIFVDRSTLPGADPSTIWLADLIEATEVLAASAEPCDPAIVRAFSDRLAMRADIRPLFEPAA
Ga0137399_113621102	3300012203	Vadose Zone Soil	MDHSALPTSDRSGVWLAHLIEATEVVAASAEPCDAAMVKAFSRRLEMPADVRFRAHELPMVKA
Ga0137362_116007501	3300012205	Vadose Zone Soil	MGMDRSTLPSADPSTVWLADLIEATEGVAASAEPCDPAIVKAFSHRLELRTDVRPLFEPAAWGT
Ga0150985_1059489782	3300012212	Avena Fatua Rhizosphere	MGMERFTLRSADPSTVWLADLIRTTEAVAAFSAEPCDPAAVKAFSHRLEMRTDVRPLLDTVRISST*
Ga0150985_1152826121	3300012212	Avena Fatua Rhizosphere	MSILMDHHSTLPSTDPSTVWLTHLIEASEVLAGSVEPCDPAIVKAFSHRLEMRTDVRPLFEPARVGTNP*
Ga0150985_1163483371	3300012212	Avena Fatua Rhizosphere	MDRSALPRTDRSWLAGLIQATEVVAASAEPCDPATVKAFSDRWAMRAEVRPLFDLVRISTAW*
Ga0137384_100656803	3300012357	Vadose Zone Soil	MMGRSALPSTDRSVVWLADLIEATEVVGASAKPCAPAIVKAFSHRLELRADVRPPFERASMNWRP*
Ga0150984_1068373763	3300012469	Avena Fatua Rhizosphere	MDSDNLPSADRSQVWLADLIEATEVIAASAKPCDPATLKAFSHRLEMRADVRPLFDLVRNSIVW*
Ga0150984_1101938191	3300012469	Avena Fatua Rhizosphere	VGILMDRSSLPSTDPSTVWLTHLIEAAEVLAGSVEPCDPAIVKAFSHRLEMRTDVRPLFEPARVGTNP*
Ga0150984_1126940002	3300012469	Avena Fatua Rhizosphere	MDRSALPSTDRSWLAGLIQATEGVAASAEPCDPATVKAFSDRWAMRANVRPLFDLVRISTAW*
Ga0150984_1131995412	3300012469	Avena Fatua Rhizosphere	MDRSALPSTDRSWLAGLIQATEVVAASAEPCDPATVKAFSDRWAMRAEVRPLFDLVRISTAW*
Ga0150984_1168791732	3300012469	Avena Fatua Rhizosphere	MGIFMDRSTFPGADPSTVWLADLIEAAEVLAASAEPCDPAIVKAFGHRLEMRADVVRPLFEPARMGLDA*
Ga0137358_104741702	3300012582	Vadose Zone Soil	MGMDRSIFPSTDRSIVWLANLIEATEVVATSGKRCDPAIVRAFSHRLEMRADFGRCSRTDGTAG*
Ga0137397_104706354	3300012685	Vadose Zone Soil	MGMDRSILPSADPSTVWLADLIEATEVVAASAEPCDPAIVKTFSHRLELR
Ga0137359_107880823	3300012923	Vadose Zone Soil	MGMDRSTLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLF
Ga0137359_109389362	3300012923	Vadose Zone Soil	MGIFMDRSTLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETRADVR
Ga0137413_103910381	3300012924	Vadose Zone Soil	MGIFMDRSTLPSADPSTVWLTHLIEASEVLAASVEPCDPAIVKAFSHRLEMRTDVRPLF*
Ga0137413_105645962	3300012924	Vadose Zone Soil	MGRSALPSSDLRTAWLADLIEATEVVAASAEVCDPEIIKAFGHRLEMSADVRPPFEPGHTDTVT*
Ga0137413_111496621	3300012924	Vadose Zone Soil	MGMDRSIFPSTDRSIAWLANLIEATEVVATSGKRCDPAIVRAFSHRLEMRADFGRCSRTDGTAG*
Ga0137419_114245521	3300012925	Vadose Zone Soil	MDRFPLPSTDRSIVWLADLIVATEVVASSGQPCDPAIVKAFSRRLEMRADLRPLFEPAAMGTGG*
Ga0137407_111639983	3300012930	Vadose Zone Soil	MDQSALTSSDRSGVWLAHLIEAAEVVATSAEPCDAAIVKTFSYRLEQRADVGPLFDFVRMNFRW*
Ga0164300_101205091	3300012951	Soil	MGIFMDRSTLPGADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETRADCPAAP*
Ga0164298_103046411	3300012955	Soil	MDISMDRSTLPSADPSTVWLAHLIEAAEVLAASAEPCDPAIVKAFSHRLELRADVRPPSSNGPPWARTD*
Ga0164298_108580322	3300012955	Soil	MGIFTDRSTLPGADPSTVWLADLIEATEVVAASGEPCDPAIVKAFRHRLETRADCPAAP*
Ga0164298_113470541	3300012955	Soil	MGICVDRSIRPGAEPITVWLADLIEATEVGAASAESCDPAIVKAFRHRL
Ga0164303_102806962	3300012957	Soil	MGIFMDRSTLPSADPSTVWLTLIEASEVLAASVEPCDPAIVKAFSHRLEMRTDVRPLFEPARVGTNP*
Ga0164301_103950711	3300012960	Soil	MGIFMDRSNLSSADPSTVWLADLIAATEVAAASAEPCDPVIVKAFRHRLEAGADVRRHLDPAFAQL*
Ga0164301_104275501	3300012960	Soil	MGTYRSTLPSADPSTVWLTHLIEASEVLAASVEPCDPAIVKAFSHRLEMRTDVRPLFEPARVGTNP*
Ga0164302_100071787	3300012961	Soil	MGIFMDRYTLPGADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETRADCPAAP*
Ga0164302_100418352	3300012961	Soil	MGIFMDRSNLSSADPSTVWLADLIAATEVAAASAEPCDPVIVKAFRHRLETRADVRRHLDPAFAQL*
Ga0164309_105523913	3300012984	Soil	MGIFMDRSNLSSADPSTVWLADLIAASEVAAASAEPCDPAIVKAFRHRLETRADVRRAMALYVGGDSPGD
Ga0164308_101458112	3300012985	Soil	MDRSTLPRADPSTVWLADLIEAAEVLAASAEPCDPAIMQAFSSRLEMHADVRSLALSQER
Ga0164304_100274045	3300012986	Soil	MGIFMDRYTLPGADPSTVWLADLIEATEVVAASAEPCDPTIVKAFRHHLETRADCPAAP*
Ga0164307_113937092	3300012987	Soil	MDRSALPSSDRSWLAGLIQATEMVAASAEPCDPATVKAFSDRWAMRADVRPLFDLVRISTAL*
Ga0164305_103289252	3300012989	Soil	MGIFMDRSNLPSADPSTVWLADLIEATEVAAASAEPCDPVIVKAFRHRLEAGADVRRHLDPAFAQL*
Ga0164305_103499631	3300012989	Soil	CFRRVSDALMGIFMDRSTLPGADPSTVWLADLIEATEVVAASGEPCDPAIVKAFRHRLETRADCPAAP*
Ga0157374_100855157	3300013296	Miscanthus Rhizosphere	MDRSTLPSADPSTVWLADLIEAAEVLAAFAEPCDPAIMQAFSSRLETHADVRSLALSQER
Ga0157378_127750501	3300013297	Miscanthus Rhizosphere	ALPSTDSSAVWLADLIETSEAVAASEERCDPATVKAFSDRLAMPARDRPLFDLVRASIRW
Ga0182024_103414872	3300014501	Permafrost	MMGRSALPSTDRSTVWLADLIEAAEVVAASAEPCNPAAMKAFSHRLAMGADVQTRFEPVRVGSGR*
Ga0157376_110905132	3300014969	Miscanthus Rhizosphere	MGIFTDCPTLPGADHNNTVWLTDLIEAAEVLAASAEPCDPAIVKAFGLRLKMRADARPLFQKR*
Ga0137418_108425671	3300015241	Vadose Zone Soil	MDRFPLPSTDRSIVWLADLIEATELVAASAQPCDPAIMRAFCHRLEMRADVRPL
Ga0137418_108654842	3300015241	Vadose Zone Soil	MGMDRSIFPSTDRSIAWLANLIEATEVVATSGKRCDPAIVRAFSHRLEMRADFGRCSTTD
Ga0137418_109155952	3300015241	Vadose Zone Soil	MDRSILRGADPSTVWLADLIEATEVVAASAEPCDPAIVTAFSHRLELRADVRPLFEPPWARAD*
Ga0137409_113957191	3300015245	Vadose Zone Soil	MDRFPLPSTDRSIVWLADLIEATEVVAASAQPCDPAIMRAFSHRLEMRADVRPLFESARMIDPTLACRIR
Ga0132258_113593222	3300015371	Arabidopsis Rhizosphere	MDRPSLPSAEPSTIWLADLIEATEAVAASAEPCDPAIVRAFSHRLAMRADVRLLLEPARAAPAVDICSTTGQR*
Ga0132258_118669132	3300015371	Arabidopsis Rhizosphere	MDRSALPSTDRGTVWLAGLIQAAEVVAASAEPCDPATVKAFSDSWAMRTDVRPLFDLVRTNSAW*
Ga0132257_1039560882	3300015373	Arabidopsis Rhizosphere	MDRSALPSTDRGTVWLAGLIQAAEVVTASAEPCDPATVNAFSDSWAMRTDVRPLFDLVRTNSAW*
Ga0132255_1009441013	3300015374	Arabidopsis Rhizosphere	MGMDRSTLPSADPSTVWLADLIEAAEVLAAFAEPCDPAIMQAFSSRLEMHADVRSLALSQER*
Ga0190274_102285261	3300018476	Soil	MGTYRSTLPSADPSILWLANLIEATEVVAASVEPCDPAIVKAFSHRLEFCAYIRPLFEP
Ga0190274_103932753	3300018476	Soil	MGILMHRSNLQSADPSTVWLADLIEAMEVVAASAEPCNPAIVKAFRHRLESLADVRPLFEPAAWTLADKKKVGLSLIP
Ga0190274_104396992	3300018476	Soil	MSRSALPSADPGIVWLTELIEATEAVAASGQPCDPAVVKAFSHRLELLAHVRPLLGPVALGRAD
Ga0190274_111744091	3300018476	Soil	MGRSALRSTEPSSVWLADLIEATEVVAASSEPCDAAIVKAFSHHLQVRELLVSNKGAYTY
Ga0190271_115262361	3300018481	Soil	MGRSALPSADPCTVWLTELIEATEAVAASGQPCDPAVVKAFSHRLELLAHVRPLL
Ga0181514_16050732	3300019268	Peatland	MMSRSALPSSDRSTVWLADLIEAAEVVAASAEPCNPAAMKAFSHRLAMGADVQTRFEPARASSGR
Ga0193743_11184671	3300019889	Soil	MGRSALPNADRSTIWLADLIEATEVMAASGELCDPAIVKAFSHRLEMRADVRTQCEPVRIGIAS
Ga0179592_104160621	3300020199	Vadose Zone Soil	MGMDRSILPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLFEPPWARA
Ga0179958_11825112	3300021315	Vadose Zone Soil	MGMDRSIFPSTDRSIVWLANLIEATEVVATSGKRCDPAIVRAFSHRLEMRADFGRCSRTDGTAG
Ga0222728_10985421	3300022508	Soil	MGIDGSILPSADPSTVWLADLIEPTEVVAASAEPCDPAIVKAFSHRLELRADVRPLYEPPWARAD
Ga0242652_10387092	3300022510	Soil	MGIFMDRSNLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLYEPPWARAD
Ga0242654_102052852	3300022726	Soil	MGILMDRSTLPSADPSAVWLSDLIEAAEVLAVSAEPCDPAIVKAFGHRLEMRADVRPLFDPARMGRGA
Ga0242654_103412222	3300022726	Soil	MAIFMDRSTLPSGDPSTVWLADLIEATEAVAASAEPCDPAIVKAFSHRLELRADVRPLYEPPWARAD
Ga0207665_113304312	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MGIFMDRYTLPGADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETGADCPAAP
Ga0209438_10465583	3300026285	Grasslands Soil	MGIFMDRSTLPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLETRADVRRHLD
Ga0209240_10179383	3300026304	Grasslands Soil	MGMDRSILPSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLFEPPWARAD
Ga0209131_10310298	3300026320	Grasslands Soil	MGMDRSILPSADPSTVWLADLIDATEVVAASAEPCDPAIVKAFSHRLELRADVRPL
Ga0257168_11543062	3300026514	Soil	MDRSILPSADPSTVWLADLIEAAEAVTASAEPCDPAIVKAFSHRLELRADVRPLFEPPWARAD
Ga0209011_12254432	3300027678	Forest Soil	MGSSALPSADRSSVWLADLIAATEAVVASAQPCDPAIVKAFSHRLEMRTDVRTLREPVRMSTGT
Ga0222749_103175951	3300029636	Soil	MGIFMDRSTLPSGDPSTVWLADLIEATEAVAASAEPCDPAIVKAFSHRLELRADVRPLYEPPWARAN
Ga0075394_115191031	3300030969	Soil	MGIFMDRPTLPGADHSTVWLTDLIEAAEVLAASAEPCDPAVVKAFGHRLKMRADARPLFQKR
Ga0308183_11202192	3300030988	Soil	MGILMHRSNLLSTDPSTVWLADLIEAMEVVAASAEPCHPAIVKAFRHRLESRADVRPLFEPTAWTLAEEKDRTFSNTVRPRHA
Ga0170834_1138325102	3300031057	Forest Soil	MGMDRSIFPSADPSIVWLADLIEATEVVAASAEPCDPAIVKAFSHRLELRADVRPLFEPPWARAD
Ga0308197_102172541	3300031093	Soil	MDRSALPRTDRSWLAGLIQATEVVAASAEPCDPATVKAFGDRWAMRADVRPLFDLVPISIAW
Ga0308197_103431931	3300031093	Soil	MDRFALPSTARSDVWLAGLIETTEAVAASDERCDPTTVKAFSDRLAMPADVRPLFDLVRMSTGW
Ga0170824_1032285871	3300031231	Forest Soil	MGIFMDRSTLPSADPSTVWLTDLIEAAEVVVASAERCDPAMVKAFSHRLESGAAARLAPRMAHGL
Ga0170824_1089474952	3300031231	Forest Soil	MGIFMDRFILPSTDPSTVWLADLIEATEAVAASTEPCDPAIVEAFSHRLELRTDVRHCSNRPPRARAD
Ga0307506_102621742	3300031366	Soil	MGRTASSSTDPSTVWLVDLIEATEVVAASDEPCDPAIVTMFSHRLRAGADGRLLFEQAIVERLQAGAA
Ga0307513_103377432	3300031456	Ectomycorrhiza	MERSALLSTDRSAAWLASLIEATEVVAACTGPCDAAILKSFNDHLEMQADIRPPCEAVRISAAS
Ga0307416_1011840312	3300032002	Rhizosphere	MGRSALPNTDRSTMWLADLIEATEVVAASGELCDPAIVKAFSHRLETGADVRTEPEPVSTGIAS
Ga0307470_100749832	3300032174	Hardwood Forest Soil	MGMDRSTLPAADPSTVWLADLIEATEVVAASAEPCDAAIVKAFRHRLETRADCPAAP
Ga0307470_112137391	3300032174	Hardwood Forest Soil	FRRVSDALMGILIDRSTLPSADPSTVWLADLIEATEVVAASAKPCDPAIVKAFSDRLQKRADVTPLSEPDRMSANG
Ga0307471_1025527322	3300032180	Hardwood Forest Soil	MGRSALPSTDRSAVWLADLIEATEVVAASAERCDPAIVKAFNHRLEMRADVRPLIELAHTGTGT
Ga0370544_17355_231_470	3300034447	Soil	MHRSNLQSADPSTVWLADLIEATEVVAASAEPCDPAIVKAFRHRLESRADVRPLFEPTAWTLAEEKDRTFSNTVRPRHA
Ga0370548_113105_294_473	3300034644	Soil	MGIFMDRSTLPGADPSTVWLADLIEATEVVAASVEPCDPAIVKAFRHRLETRADCPAAP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094431

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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