NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F094295

Metagenome / Metatranscriptome Family F094295

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F094295
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 96 residues
Representative Sequence PNILVDYLLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCSEPAAESALRSEAVKEVSASLAELGA
Number of Associated Samples 88
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.72 %
% of genes near scaffold ends (potentially truncated) 94.34 %
% of genes from short scaffolds (< 2000 bps) 93.40 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (96.226 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(37.736 % of family members)
Environment Ontology (ENVO) Unclassified
(51.887 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.774 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 54.87%    β-sheet: 0.00%    Coil/Unstructured: 45.13%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF12833HTH_18 6.60
PF00072Response_reg 1.89
PF00990GGDEF 1.89
PF02511Thy1 0.94
PF00483NTP_transferase 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.94

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.23 %
UnclassifiedrootN/A3.77 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002560|JGI25383J37093_10044096All Organisms → cellular organisms → Bacteria1460Open in IMG/M
3300002908|JGI25382J43887_10486016All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium523Open in IMG/M
3300002908|JGI25382J43887_10489675All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium521Open in IMG/M
3300002912|JGI25386J43895_10071190All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium949Open in IMG/M
3300005172|Ga0066683_10363440All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium898Open in IMG/M
3300005176|Ga0066679_10808998All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium597Open in IMG/M
3300005179|Ga0066684_10039994All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2624Open in IMG/M
3300005187|Ga0066675_10742898All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium739Open in IMG/M
3300005445|Ga0070708_102062774All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium528Open in IMG/M
3300005446|Ga0066686_11071550All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium519Open in IMG/M
3300005468|Ga0070707_102179593All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. CF161522Open in IMG/M
3300005471|Ga0070698_101879890All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium551Open in IMG/M
3300005536|Ga0070697_102093493All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium506Open in IMG/M
3300005540|Ga0066697_10756006All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium529Open in IMG/M
3300005540|Ga0066697_10804258All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium511Open in IMG/M
3300005553|Ga0066695_10398133All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium855Open in IMG/M
3300005553|Ga0066695_10636023All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium634Open in IMG/M
3300005557|Ga0066704_10339845All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1008Open in IMG/M
3300005557|Ga0066704_10974696All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium523Open in IMG/M
3300005559|Ga0066700_11008535All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium547Open in IMG/M
3300005568|Ga0066703_10492850All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium728Open in IMG/M
3300005598|Ga0066706_10333777All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1199Open in IMG/M
3300005598|Ga0066706_11371369All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium533Open in IMG/M
3300005598|Ga0066706_11433067All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium520Open in IMG/M
3300005598|Ga0066706_11516069All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium504Open in IMG/M
3300006031|Ga0066651_10789983All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium514Open in IMG/M
3300006046|Ga0066652_102030047All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium511Open in IMG/M
3300006046|Ga0066652_102041586All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium509Open in IMG/M
3300006173|Ga0070716_100446620All Organisms → cellular organisms → Bacteria → Proteobacteria942Open in IMG/M
3300006796|Ga0066665_10840890All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium718Open in IMG/M
3300006903|Ga0075426_10365603All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1061Open in IMG/M
3300007265|Ga0099794_10668685All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium552Open in IMG/M
3300009012|Ga0066710_103507849All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium593Open in IMG/M
3300009038|Ga0099829_10065746All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium2736Open in IMG/M
3300009038|Ga0099829_10530101All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium978Open in IMG/M
3300009038|Ga0099829_11591761All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium539Open in IMG/M
3300009088|Ga0099830_11465454All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium568Open in IMG/M
3300009090|Ga0099827_11156776All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium672Open in IMG/M
3300009090|Ga0099827_11249125All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium646Open in IMG/M
3300009137|Ga0066709_103966348All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium538Open in IMG/M
3300009137|Ga0066709_104314054All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium519Open in IMG/M
3300009143|Ga0099792_10995943All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium560Open in IMG/M
3300010122|Ga0127488_1086513All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium600Open in IMG/M
3300010141|Ga0127499_1004891All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium673Open in IMG/M
3300010323|Ga0134086_10177029All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium788Open in IMG/M
3300010333|Ga0134080_10478483All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium588Open in IMG/M
3300010335|Ga0134063_10479651Not Available620Open in IMG/M
3300010336|Ga0134071_10615119All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium569Open in IMG/M
3300010336|Ga0134071_10662399All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium550Open in IMG/M
3300010371|Ga0134125_10058596All Organisms → cellular organisms → Bacteria4281Open in IMG/M
3300011120|Ga0150983_10350491All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium561Open in IMG/M
3300012096|Ga0137389_11182631All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium655Open in IMG/M
3300012199|Ga0137383_10487961All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium902Open in IMG/M
3300012199|Ga0137383_11115402All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium570Open in IMG/M
3300012200|Ga0137382_10750512All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium701Open in IMG/M
3300012202|Ga0137363_11521509All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium560Open in IMG/M
3300012203|Ga0137399_10720457All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium840Open in IMG/M
3300012205|Ga0137362_11741452All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium510Open in IMG/M
3300012206|Ga0137380_11117222All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium671Open in IMG/M
3300012207|Ga0137381_10699093All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium881Open in IMG/M
3300012208|Ga0137376_11206226All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium646Open in IMG/M
3300012209|Ga0137379_11657614All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium537Open in IMG/M
3300012210|Ga0137378_11656516All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium547Open in IMG/M
3300012211|Ga0137377_11189477All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium692Open in IMG/M
3300012285|Ga0137370_10122588All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1483Open in IMG/M
3300012349|Ga0137387_10642576All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium768Open in IMG/M
3300012349|Ga0137387_11055003All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium581Open in IMG/M
3300012353|Ga0137367_11060906All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium549Open in IMG/M
3300012354|Ga0137366_10259094All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1287Open in IMG/M
3300012359|Ga0137385_11541749All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium528Open in IMG/M
3300012362|Ga0137361_11505316All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium595Open in IMG/M
3300012363|Ga0137390_10636530All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1032Open in IMG/M
3300012381|Ga0134026_1013981All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium524Open in IMG/M
3300012407|Ga0134050_1236330Not Available654Open in IMG/M
3300012582|Ga0137358_10494442All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium824Open in IMG/M
3300012922|Ga0137394_11595970All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium509Open in IMG/M
3300012923|Ga0137359_10406547All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1207Open in IMG/M
3300012923|Ga0137359_10683320All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium895Open in IMG/M
3300012925|Ga0137419_11040855All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium680Open in IMG/M
3300012930|Ga0137407_11562191All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium628Open in IMG/M
3300012944|Ga0137410_10891968All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium752Open in IMG/M
3300012972|Ga0134077_10445622All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium566Open in IMG/M
3300012977|Ga0134087_10719118All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium532Open in IMG/M
3300012977|Ga0134087_10729245All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium529Open in IMG/M
3300014157|Ga0134078_10636135All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium515Open in IMG/M
3300015241|Ga0137418_10103366All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium2561Open in IMG/M
3300015357|Ga0134072_10471108All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium511Open in IMG/M
3300015359|Ga0134085_10484844All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium564Open in IMG/M
3300017654|Ga0134069_1205889Not Available673Open in IMG/M
3300017659|Ga0134083_10128849All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1014Open in IMG/M
3300018433|Ga0066667_12318899All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium503Open in IMG/M
3300018468|Ga0066662_12417136All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium553Open in IMG/M
3300021086|Ga0179596_10474101All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium634Open in IMG/M
3300021307|Ga0179585_1104764All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium516Open in IMG/M
3300025910|Ga0207684_10466969All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1083Open in IMG/M
3300026295|Ga0209234_1195682All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium692Open in IMG/M
3300026296|Ga0209235_1204852All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium670Open in IMG/M
3300026310|Ga0209239_1161589All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium872Open in IMG/M
3300026313|Ga0209761_1027043All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium3494Open in IMG/M
3300026329|Ga0209375_1024510All Organisms → cellular organisms → Bacteria3383Open in IMG/M
3300026331|Ga0209267_1112348All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1152Open in IMG/M
3300026342|Ga0209057_1159631Not Available685Open in IMG/M
3300027748|Ga0209689_1133961All Organisms → cellular organisms → Bacteria1226Open in IMG/M
3300027846|Ga0209180_10629950All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium590Open in IMG/M
3300032180|Ga0307471_100178800All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2090Open in IMG/M
3300032180|Ga0307471_104132139All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium513Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil37.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil23.58%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil16.04%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil12.26%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.66%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.89%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.94%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.94%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.94%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010122Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010141Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012381Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012407Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021307Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25383J37093_1004409643300002560Grasslands SoilMLVDFMLKAGIGRARFGQLDRAERLLTSALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA*
JGI25382J43887_1048601623300002908Grasslands SoilFERWREQCDARRESMPPNMLVDYMLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA*
JGI25382J43887_1048967523300002908Grasslands SoilFERWREQCDARRESMPPNMLVDYMLKAGIGRARFGQLERAERLLASALRMADEAGLHEFTFRIERIQGGLRDCDCAEPAAESALRSEAVKEVSASLAELGA*
JGI25386J43895_1007119033300002912Grasslands SoilHCASYRRDRVGFERWREQCDARRESMPPNILVDYMLKAGIGRARFGQLDRAERLLVSALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA*
Ga0066683_1036344033300005172SoilRWREQCDARRESMPPNILADYMLKAGIGRARFGQLDRAERLLASALRIADDAGLHELTFRIERIKTGLRDCHCETPLEAIAEGAAEPVQSEPVRGVSAALAHLACAT*
Ga0066679_1080899823300005176SoilASFRRDRVGFERWREQCDARRESMPPNILVDYMLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERISAGLRDCDCTEAAAESDFRSEAVREVSAALAHL*
Ga0066684_1003999413300005179SoilLVDYMLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALSSEAVTEVSASLAELGA*
Ga0066675_1074289833300005187SoilPNVLVDYMLKAGIGRARFGQVDRAERLLASALRIAEEAGLHEFTFRIERIKAGLRDSCQSPNEGLAEAAEPVVQSRAVREVSVALEHLAGAI*
Ga0070708_10206277423300005445Corn, Switchgrass And Miscanthus RhizosphereMLKAGIGRARFGQLDRAERLLASALKIADDAGLHEFTFRIERIKFGLRDCRQSPNEEPAEVAQPVVQPKAVREVSTALAHLAAGT*
Ga0066686_1107155023300005446SoilVDYMLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEAAAESDFRNDAVREVSAALAHLRI*
Ga0070707_10217959313300005468Corn, Switchgrass And Miscanthus RhizosphereVDYILKAGIGRARFGQLDRAERLLADALRIADETGLHEFTFRIERIKAGLRDCRQAPNEELAEVAKPVVQTQAVREVSAALAHLAGTT*
Ga0070698_10187989023300005471Corn, Switchgrass And Miscanthus RhizosphereDARRESMPPNILVDYLLKAAIGRARFGQPDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCSEPAAESDFRNDAVREVSVALAHVQI*
Ga0070697_10209349313300005536Corn, Switchgrass And Miscanthus RhizosphereNILVDYTLKAGIGRARFGQIDRAERLLTSALRTADEAGLHEFTFRIERIKAGLRDCDCPEAAAESDFRSDAVREVSASLAHLPG*
Ga0066697_1075600613300005540SoilLVDYMLKAGIGRARFGQLERAERLLTSALRIADEAGLHEFTFRIERIKAGLRDCDNPETAAESGFRNDAVREVSAALAHLQI*
Ga0066697_1080425813300005540SoilFKAGIGRARFAQFDRAERLLANALRIADEAVLHEFTFRIERIKAGLRDSCQSPNERPAEAADPVVQSEAVREVSAGLAHLAGAT*
Ga0066695_1039813313300005553SoilGIGRARFGQVDRAERLLTDALRIADQAGLHEFTFRIERIKAGLRDCDCPEAAAESDFRNEAVREVSAALVHLQP*
Ga0066695_1063602333300005553SoilERWREQCDGRRESMPPNILVDYMLKAGIGRARFGQVDRAERLLASALRIADEAGLHEFTFRIDRINAGLRDCRQAPNEELAEVARPFVQNKAVSEVSTALADLAGKT*
Ga0066704_1033984513300005557SoilFRRDRVGFERWRERCEARQENMPPNVLVDYLLKAGIGRARFGQLERAERLLANALRIAEEAGLHEFTFRIERIKTGLRDCGEAAAEPVVQTDAVREVSTALAHLAGVG*
Ga0066704_1097469623300005557SoilDRVGFERWREQCDARRESMPPNMLVDYMLKAGIGRARFGQLERAERLLASALRMADEAGLHEFTFRIERIQGGLRDCDCAEPAAESALRSEAVKEVSASLAELGA*
Ga0066700_1100853513300005559SoilESMPPNILVDYMLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALSSEAVTEVSASLAELGA*
Ga0066703_1049285013300005568SoilWREQCDARRESMPPNMLVDFMLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALRSEAVKEVSASLAELGA*
Ga0066706_1033377733300005598SoilELMHCASFRRDRVGFERWRERCEARQENMPPNVLVDYLLKAGIGRARFGQLERADRLLANALRIADEAGLHEFTFRIERIKTGLRDCGDAAAEPVVQTDAVREVSTALAHLAGVG*
Ga0066706_1137136913300005598SoilPNVLVDYLLKAGIGRARFGQLERAERLLANALRIADEAGLHEFTFRIERIKAGLRDSCQPPIEGLAEAAEPVVQCEAVREVSASLAELGP*
Ga0066706_1143306713300005598SoilFGQLDRAERLLANALRIAEAAGLHEFTFRIERIKAGLRDCDCAEAAAESGFMSEAVREVSASLAHL*
Ga0066706_1151606913300005598SoilWREQCDARRESMPPNMLVDFMLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA*
Ga0066651_1078998313300006031SoilVDYMLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA*
Ga0066652_10203004713300006046SoilARRDGMPPNILADYLLKAGIGRARFGQVDRAERLLTDALRIADQAGLHEFTFRIERIKAGLRDCDCSEAAAESDFRNEAVREVSAALAHLEP*
Ga0066652_10204158613300006046SoilARRDGMPPNILADYLLKAGIGRARFGQVDRAERLLTDALRIADQAGLHEFTFRIERIKAGLRDCDCPEAAAESDFRNEAVREVSAALVHLQP*
Ga0070716_10044662013300006173Corn, Switchgrass And Miscanthus RhizosphereQCDARRETMPPNIMVDYMLKAGIGRARFAQLDRAERLLASALKIADEAGLHEFTFRIERIKSGLRDCRLTPHEEPAEVAKPIVQTEAVREVSTALAHLAGAT*
Ga0066665_1084089033300006796SoilASYRRDRVGFERWREQCDARRESMPPNVLVDYLLKAGIGRARFGQIDRAERLLASALRIADEAGLHEFTFRIERINAGLRDCRQAPNEELAEVARPFVQNKAVSEVSTALADLAGKT*
Ga0075426_1036560313300006903Populus RhizosphereGIGRARFGQFDRAERLLASALRIADAAGLHEFTFRIERIQAGLRDSCQSPNERPAEAAEPVVQSEAVREVSAGLAHLAGAT*
Ga0099794_1066868523300007265Vadose Zone SoilGRARFGQLDRAERLLADALRIADETGLHEFTFRIERIKAGLRDCDCPEAAAESDFRSEAVREVSAALAHLPR*
Ga0066710_10350784913300009012Grasslands SoilRVGFERWREQCDARRESMPPNILVDFLLKSGIGRARFGQLDRAERLLVSALRIADEAGLHEFTFRIERIQAGLRDCDCLETAAESDFRSEAVREVSASLAELGA
Ga0099829_1006574653300009038Vadose Zone SoilPPNMLVDFLLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCSEPAAESALRSEAVKEVSASLAELGA*
Ga0099829_1053010113300009038Vadose Zone SoilDYLLKAGIGRARFGQLDRAERLLAEALRIAEDAGLHEFSFRIERLKAGLRDNCDPLKEVAAEAAEPVVQTDGVREVSAALANLAGAT*
Ga0099829_1159176123300009038Vadose Zone SoilPPNILVDYMLKAGIGRARFGQLDRAERLFASALRIADEAGLHEFTFRIERIKSGLRDCRLAPNEEPAEVAKPVVQTEAVREVSTALAHLAGTT*
Ga0099830_1146545413300009088Vadose Zone SoilRFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCSEPAAESALRSDAVKEVSASLAELGA*
Ga0099827_1115677623300009090Vadose Zone SoilMHCASFRRDRVGFERWRERCDARREGMPPNILVDYLLKAGIGRARFGQLDRAERLLTDALRIADETGLHEFTFRIERIKAGLRDCRLAPNEEPAEVAQPVVQTKAVREVSAALAHLAGAT
Ga0099827_1124912533300009090Vadose Zone SoilRETMPPNILVDYMLKAGIGRARFGQVDRAERLLASALRIADEAGLHEFTFRIERIKAGLRDCDSPETAAESDFRNDAVREVSAALAHLQI*
Ga0066709_10396634813300009137Grasslands SoilMDNAFIELMNCASFRRDRVGFERWREQCDGRRDSMPPNILVDFLLKAAIGRARFRQIDRAERLLATALRIADEAGLHEFTFRIDRIKAGLRDCGEAAAEPVVQSEAVRQVSASLAHLDG*
Ga0066709_10431405413300009137Grasslands SoilDYMLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCACPETAAESDFRNDAVREVSAALAHLRI*
Ga0099792_1099594313300009143Vadose Zone SoilYLLKAGIGRARFGQLDRAERLLTSALRIADEAGLHEFTFRIERIQAGLRDCDCSEPAAESALRSEAVKEVSASLAELGA*
Ga0127488_108651313300010122Grasslands SoilLKAGIGRARFGQVDRAERLLASALRIAEEAGLHEFTFRIERIKAGLRDRCQSPNEGLAEAAEPVVQSRAVLEVSVALEHLAGAI*
Ga0127499_100489113300010141Grasslands SoilRWREQCDARRETMPPNMLVDFMLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALSSEAVKEVSASLAELGA*
Ga0134086_1017702923300010323Grasslands SoilFERWREQCDARRDSMPPNILVDYMLKAGIGRARFGQFDRAQRLLANALRIADEAKLHEFTFRIERIKNGLSDCEEMCAAAAELSMEHECRSEAVREVSASLARLGS*
Ga0134080_1047848313300010333Grasslands SoilMPPNILVDYMFKAGIGRARFGQLDRAERLLTSALRIADEAGLHEFTFRIERIQAGLRDCDCAETAAESDFRNDAVREVSAALAHLQV*
Ga0134063_1047965113300010335Grasslands SoilILKAAIARARFGQVDRAERLLTSALQIADQAGLHEFTFRIERIKAGLRDCGEAAAEPVVQSEAVREVSTALAHLAGAT*
Ga0134071_1061511913300010336Grasslands SoilMPPNILVDYILKAGIGRARFGQFDRAQRLLENALRIADVAKLHEFTFRIERIKNGLSECEEMCAAAPELSTEHECRSEAVREVSASLAQLGS*
Ga0134071_1066239913300010336Grasslands SoilPPNILVDYMLKAGIGRARFGQVDRAERLLASALKIADEAGLHEFTFRIERIKAGLRDSCQSPNERPAEAADPVVQSEAVREVSAGLAHLAGAT*
Ga0134125_1005859613300010371Terrestrial SoilEQCDARRETMPPNILVDYMLKAGIGRARFGQLDRAERLLASALKIADEAGLHEFTFRIERIKAGLRDCRQTPHEEPAEVAQPVVQPKAVREVSTALAHLAGAT*
Ga0150983_1035049113300011120Forest SoilRSAQDVVENAMIELMHCASFRRDRVGFERWREQCDARRESMPPNILVDYMLKAGIGRARFGQVDRAERLLADALRIADEANLHEFTFRIERIKAGLRDCRRAPDEEPAEVAKPVVQTQAVREVSDALAHLAGVP*
Ga0137389_1118263113300012096Vadose Zone SoilELMHCASFRRDRVGFERWREQCDARREGMPPNVLVDYMLKAGIGRARFGQLERAERLLANALQIADDAGLHEFTFRIERIKSGLRDCRLAPNEEPAEVAKPVVQTEAVREVSTALAHLAGTT*
Ga0137383_1048796113300012199Vadose Zone SoilMPPNILVDYMLKVGIGRARFGQLDRAERLLVNALRIAEEAGLHEFTFRIERIKAGLRDCDCAEAAAESDFRNEAVREVSAALAHLQS*
Ga0137383_1111540213300012199Vadose Zone SoilAGIGRARFGQFDRAERLLAGALQIADQAGLHEFTFRIERIKSGLPECQRLCAAAPELDTEPDCWSDAVREVSASLAELAR*
Ga0137382_1075051213300012200Vadose Zone SoilMHCASFRRDRVGFERWREQCDARRENMPPNILADYTLKAGIGRARFGQLDRAERLLTSALQIADQAGLHEFTFRIERIKAGLRDCGEAAAEPVVQSEAVREVSTALAHLAGSS*
Ga0137363_1152150923300012202Vadose Zone SoilVENAMIELMHCASFRRDRVGFERWREQCDARRENMPPNILVDYMLKAGIGRARFGQLDRAERLLTDALRIADEANLHEFTFRIERIKAGLHDCRQAPNEEPAEVAKPVVQPEAVREVSAAVAHLAGDR*
Ga0137399_1072045713300012203Vadose Zone SoilLREILRNNASRDVTDNALIELMHCASYQRDRVGFERWREQCDARRENMPPNILVDYLLKAGIGRARFGQLDRGERLLTDALRIADEAGLHEFTFRIERIKSGLRGSCQSPNEGPAEAAKPVILSEPVREVSTALAHLAGVP*
Ga0137362_1174145213300012205Vadose Zone SoilRDRVGFERWREQCDARRESMPPNILVDYMLKAGIGRARFGQLDRAERLLTDALRIADEANLHEFTFRIERIKAGLHDCRQAPNEEPAEVAKPVVQPEAVREVSAAVAHLAGDR*
Ga0137380_1111722223300012206Vadose Zone SoilLKAAIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERITAGLRDCDCQEPLKATPESIAEPDFQSEAVREVSDSLARLDS*
Ga0137381_1069909333300012207Vadose Zone SoilSYRRDRVGFERWRERCDARRESMPPNILVDYMFKAGIGRARFGQVDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCPETAAESDFRNDAVREVSVSLAHLQP*
Ga0137376_1120622613300012208Vadose Zone SoilSAIIELMNCASYRRDRVGFERWREQCDARRESMPPNILADYMLKAGIGRARFGQLDRAERLLASALRIADDAGLHELTFRIERIKTGLRDCHCETPLEAIAEGAAEPVQSEPVRGVSAALAHLAGAT*
Ga0137379_1165761423300012209Vadose Zone SoilMHCASYRRDRVGFERWREQCDARRESMPPNILVDYMFKAGIGRARFGQLDRAERLLTSALRIADEAGLHEFTFRIERIQAGLRDCDCPERAAESDFRNDAVREVSAALAHLQV*
Ga0137378_1165651613300012210Vadose Zone SoilPNILVDYMLKAGIGRARFGQVDRAERLLVNALRIAEEAGLHEFTFRIERIKAGLRDCDCAEAAAESDFRNEAVREVSAALAHLQP*
Ga0137377_1118947713300012211Vadose Zone SoilMHCASFRRDRVEFERWREQCDVRRETMPPNILVDYLLKAGIGRARFGQIDRAERLLASALKIADEAGLHEFTFRIERIKFGLRDCRQSPNEEPAEVAEPVKQPKAVREVSTAVAHLAGAP
Ga0137370_1012258843300012285Vadose Zone SoilERWREQCDARRENMPPNIFVDYMLKAGIGRARFGQLDRAERLLTSALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA*
Ga0137387_1064257633300012349Vadose Zone SoilGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDSDCAETAAESDFRNDAVREVSAALAHLRI*
Ga0137387_1105500313300012349Vadose Zone SoilGFERCREQCDARRESMPPNMLVDYMLKAGIGRARFGQLERAERLLTSALRIADEAGLHEFTFRIERIKAGLRDCDCAEPAAESALRSEAVKEVSASLAELGA*
Ga0137367_1106090613300012353Vadose Zone SoilMHCASFRRDRVGFERWREQCDARRDGMPPNILVDYLLKAGIGRARFGQLDRADRLLASALRIADEAGLHEFTFRIERIKAGLRDCRQAPNEEPAEVAKPVVQTAAVREVSTGLAHLAGTT
Ga0137366_1025909413300012354Vadose Zone SoilECEARREGMPPNILVDFMLKSGIGRARFGQLDRAERLLSSALRIADEAGLHEFTFRIERIQAGLRDCDCPETAAESDFRSEAVREVSASLAEFEA*
Ga0137385_1154174923300012359Vadose Zone SoilYMLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCACPETAAESDFRNDAVREVSAALAHLRI*
Ga0137361_1150531623300012362Vadose Zone SoilFERWREHCDARRESMPPNILVDYMFKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA*
Ga0137390_1063653013300012363Vadose Zone SoilDRVGFERWREQCDARRENMPPNILVDYMLKAGIGRARFGQLERAERLLADALRIADEANLHEFTFRIERIKAGLRDNCSAPSQGPAEAAEPVVQVQSDAIREVSTALAHLVGAT*
Ga0134026_101398113300012381Grasslands SoilVMDNAFIELMHCASFRRDRVGFERWREQCDARRENMPPNILADYTLKAGIGRARFGQLDRAERLLTSALQIADQAGLHEFTFRIERIQAGLRDCDCLETAAESDFRSEAVREVSASLAELGA*
Ga0134050_123633033300012407Grasslands SoilRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEAAAESDFRSEAVREVSAALAHLRI*
Ga0137358_1049444213300012582Vadose Zone SoilNILVDYMLKAGIGRARFGQLDRAERLLTDALRIADEAGLHEFTFRIERIKSGLRGSCQSPSEEPAEAAKPVILSEPVREVSAALAHLAGVL*
Ga0137394_1159597023300012922Vadose Zone SoilRFGQLDRAERLLTDALRIADEAGLHEFTFRIERIKAGLRDCRRAPHEEPAEVAKPVVQTNAVREVSTALVHLADAT*
Ga0137359_1040654713300012923Vadose Zone SoilERWREQCDARRETMPPNILVDYLLKAGIGRARFGQIDRAERLLADALRIADEAGLHEFTFRIERIKTGLRDCDCLEAAAESDFRSEAVREVSTALAHLQA*
Ga0137359_1068332023300012923Vadose Zone SoilVVENALIELMHCASFRRDRVGFERWREQCDARRESMPPNILVDYMLKAGIGRARFGQLDRAERLLTDALRIADEANLHEFTFRIERIKAGLHDCRQAPNEEPAEVAKPVVQPEAVREVSAAVAHLAGDR*
Ga0137419_1104085523300012925Vadose Zone SoilSEAGNNALIELMHCASYRRDRVGFERWREQCDARRESMPPNVLVDYMLKAGIGRARFGQIDRAERLLADALRIADEAKLHEFTFRIERIKSGLRDCRQAPNEEPAEVAKPMEQPKAVREVSAALADLAAAT*
Ga0137407_1156219113300012930Vadose Zone SoilMPPNILVDYMLKAGIGRARFGQVDRAERLLANALRLADEAGLHEFTFRIERINAGLRDCDCPEAAAESDFQSEAVREVSAALAHLPS*
Ga0137410_1089196813300012944Vadose Zone SoilRVGFERWREECDARRESMPPNILVDYMLKAGIGRARFGQLDRAERLLADALRIADEVGLHEFTFRIERIKAGLRDCRRAPNEEPAEVAQPVVQTKAVREVSAAVAHLAGAT*
Ga0134077_1044562213300012972Grasslands SoilKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRNCDCAEPAAESALRSDAVKEVSASLAELGA*
Ga0134087_1071911813300012977Grasslands SoilYMLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCLETAAESDFRSEAVREVSASLAELGA*
Ga0134087_1072924513300012977Grasslands SoilLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALSSEAVTEVSASLAELGA*
Ga0134078_1063613513300014157Grasslands SoilMPPNVLVDYIFKAGIGRARFAQFDRAERLLANALRIADEAGLHEFTFRIERIKAGLRDSCQSPNERPAEAADPVVQSEAVREVSAGLAHLAGAT*
Ga0137418_1010336613300015241Vadose Zone SoilILVDYMLKAGIGRARFGQLDRAERLLADALRIADEAGLHEFTFRIERIKAGLRDCRLAPNGEPAEVAQPVVQTKAVREVSAALAHLAGAT*
Ga0134072_1047110813300015357Grasslands SoilLKAGIGRARFGQVDRAERLFASALKIADEAGLHEFTFRIERIKAGLRDCDCPVAAAESDFRSESVREVSASLAQLEA*
Ga0134085_1048484413300015359Grasslands SoilREQCDGRRESMPPNILVDYMLKAGIGRARFGQVDRAERLLASALRIADEAGLHEFTFRIDRINAGLRDCRQAPNEELAEVARPFVQNKAVSEVSTALADLAGKT*
Ga0134069_120588933300017654Grasslands SoilARFGQVDRAERLLASALRIAEEAGLHEFTFRIERIKAGLRDSDCAETAAESDYRTDAVREVSVSLAHLQP
Ga0134083_1012884913300017659Grasslands SoilAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAETAAESALTSEAVKEVSASLAELGA
Ga0066667_1231889913300018433Grasslands SoilFRRDRVGFERWREQCDGRRESMPPNILVDYMLKAGIGRARFGQVDRAERLLASALRIADEAGLHEFTFRIDRINAGLRDCRQAPNEELAEVARPFVQNKAVSEVSTALADLAGKT
Ga0066662_1241713623300018468Grasslands SoilFRRDRVGFERWREQCDARRDSMPPNILVDYMLKAGIGRARFGQLERAERLLASALRIADQAGLHEFTFRIERISAGLRDCDCAEAAAESDFRSEAVREVSAALAHLQH
Ga0179596_1047410123300021086Vadose Zone SoilNILVDYMLKAGIGRARFGQLERAERLLADALRIADEANLHEFTFRIERIKAGLRDNCSAPSQGPAEAAEPVVQVQSDAIREVSTALAHLVGAT
Ga0179585_110476423300021307Vadose Zone SoilLLKASIGRARFGQFERAERLLADALRIADQAALHEFTFRIERIKAGLRDCDCAEAAAESDFRSDAVREVSASLAHLPG
Ga0207684_1046696933300025910Corn, Switchgrass And Miscanthus RhizosphereMSPNVLTDYMLKAGIGRARFGQLDRAERLLASALKIADDAGLHEFTFRIERIKFGLRDCRQSPNEEPAEVAQPVVQPKAVREVSTALAHLAGGT
Ga0209234_119568213300026295Grasslands SoilMPPNILVDFVLKTAIGRARFGQVDRAETLLTNALNIAQGAGLHEFVFRIERMKAGLRDCVETPAEPVIQSEGVREVSAALAELV
Ga0209235_120485213300026296Grasslands SoilFRRDRVGFERWRERCDARRESMPPNILVDYMLKAGIGRARFGQLERAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALGSEAVKEVSASLAELGA
Ga0209239_116158913300026310Grasslands SoilASYRRDRVGFERWREQCDARRESMPPNILVDYILKAAIARARFGQVDRAERLLTSALQIADQAGLHEFTFRIERIKAGLRDCGEAAAEPVVQSEAVREVSTALAHLAGAT
Ga0209761_102704323300026313Grasslands SoilVDYMLKAGIGRARFGQFDRAERLFASALKIADEAGLHEFTFRIERIRNGLSECQEICAATPELATELECHSEAVREVSASLARLGP
Ga0209375_102451073300026329SoilPPNILADYLLKAGIGRARFGQVDRAERLLTDALRIADQAGLHEFTFRIERIKAGLRDCDCPEAAAESDFRNEAVREVSAALVHLQP
Ga0209267_111234833300026331SoilVDYMLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCAEPAAESALRSEAVKEVSASLAELGA
Ga0209057_115963123300026342SoilFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCLETAAESDFRSEAVREVSASLAELGA
Ga0209689_113396123300027748SoilMPPNVLVDYLLKAGIGRARFGQLERAERLLANALRIAEEAGLHEFTFRIERIKTGLRDCGEAAAEPVVQTDAVREVSTALAHLAGVG
Ga0209180_1062995013300027846Vadose Zone SoilPNILVDYLLKAGIGRARFGQLDRAERLLASALRIADEAGLHEFTFRIERIQAGLRDCDCSEPAAESALRSEAVKEVSASLAELGA
Ga0307471_10017880013300032180Hardwood Forest SoilWREQCDARREGMPPNILVDYLLKAGIGRARFGQLDRAERLLASALKIADDAGLHEFTFRIERIKAGLRDCRQTPHEEPAEVAQPVVQPKAVREVSTAVAHLAGAT
Ga0307471_10413213913300032180Hardwood Forest SoilIELMHCASYRRDRVGFERWREQCDARRESMPPNILVDYILKAAIGRARFGQLDRAERLLASALKIADEAGLHEFTFRIERIKFGLRDCRQSPNEQPAEVAQPVVQPKAVREVSAALAHLAGIT

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.