Metagenome Family F094130

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094130
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	48 residues
Representative Sequence	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGA
Number of Associated Samples	98
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.23 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.623 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.151 % of family members)
Environment Ontology (ENVO)	Unclassified (19.811 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.679 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.49% β-sheet: 10.81% Coil/Unstructured: 52.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07992	Pyr_redox_2	10.38
PF00355	Rieske	6.60
PF09339	HTH_IclR	4.72
PF01614	IclR	3.77
PF14759	Reductase_C	2.83
PF03446	NAD_binding_2	1.89
PF02410	RsfS	0.94
PF00171	Aldedh	0.94
PF02590	SPOUT_MTase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	3.77
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.94
COG0799	Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits	Translation, ribosomal structure and biogenesis [J]	0.94
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.94
COG1576	23S rRNA pseudoU1915 N3-methylase RlmH	Translation, ribosomal structure and biogenesis [J]	0.94
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.30 %
Unclassified	root	N/A	10.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	70.75 %
Unclassified	root	N/A	10.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.42 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.32 %
Unclassified	root	N/A	10.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	12.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.32 %
Unclassified	root	N/A	10.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	12.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.32 %
Unclassified	root	N/A	10.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	11.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.32 %
Unclassified	root	N/A	10.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.32 %
Unclassified	root	N/A	10.38 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	9.43 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_745399_length_1779_cov_8.101743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1811	Open in IMG/M
2170459015\|G14TP7Y02JECBK	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300000550\|F24TB_12281769	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10172034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300000891\|JGI10214J12806_10516195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300001545\|JGI12630J15595_10105557	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300002914\|JGI25617J43924_10115058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300004157\|Ga0062590_101439596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300004267\|Ga0066396_10058444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300005174\|Ga0066680_10090773	All Organisms → cellular organisms → Bacteria → Proteobacteria	1856	Open in IMG/M
3300005330\|Ga0070690_101040953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300005340\|Ga0070689_100331236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1273	Open in IMG/M
3300005437\|Ga0070710_10955375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300005440\|Ga0070705_101866675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300005467\|Ga0070706_102058879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300005468\|Ga0070707_101044934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	782	Open in IMG/M
3300005471\|Ga0070698_101781356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300005471\|Ga0070698_101786861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300005518\|Ga0070699_101328156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	659	Open in IMG/M
3300005575\|Ga0066702_10762863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	576	Open in IMG/M
3300005764\|Ga0066903_103846286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	806	Open in IMG/M
3300005764\|Ga0066903_103922802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	798	Open in IMG/M
3300005764\|Ga0066903_104693437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300005764\|Ga0066903_107532428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300006038\|Ga0075365_10110287	All Organisms → cellular organisms → Bacteria → Proteobacteria	1890	Open in IMG/M
3300006057\|Ga0075026_100236983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	974	Open in IMG/M
3300006177\|Ga0075362_10147269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1128	Open in IMG/M
3300006178\|Ga0075367_10085118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1918	Open in IMG/M
3300006186\|Ga0075369_10131390	All Organisms → cellular organisms → Bacteria → Proteobacteria	1138	Open in IMG/M
3300006844\|Ga0075428_101136052	All Organisms → cellular organisms → Bacteria → Proteobacteria	824	Open in IMG/M
3300009089\|Ga0099828_10275443	All Organisms → cellular organisms → Bacteria → Proteobacteria	1511	Open in IMG/M
3300009100\|Ga0075418_10460923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1362	Open in IMG/M
3300009143\|Ga0099792_10864605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300009148\|Ga0105243_11402417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300009162\|Ga0075423_12318787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300009176\|Ga0105242_10948601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	864	Open in IMG/M
3300009792\|Ga0126374_10513439	All Organisms → cellular organisms → Bacteria → Proteobacteria	866	Open in IMG/M
3300010046\|Ga0126384_10773480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	857	Open in IMG/M
3300010048\|Ga0126373_12732903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300010361\|Ga0126378_11519271	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300010362\|Ga0126377_13616345	Not Available	500	Open in IMG/M
3300010366\|Ga0126379_10564231	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300010373\|Ga0134128_10606521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1218	Open in IMG/M
3300010396\|Ga0134126_11610179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300010399\|Ga0134127_11254307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300012189\|Ga0137388_11377730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	644	Open in IMG/M
3300012353\|Ga0137367_11177226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300012683\|Ga0137398_10306103	Not Available	1069	Open in IMG/M
3300012923\|Ga0137359_10203368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1769	Open in IMG/M
3300012927\|Ga0137416_11528784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
3300012971\|Ga0126369_10968945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	938	Open in IMG/M
3300013102\|Ga0157371_11452720	Not Available	534	Open in IMG/M
3300015077\|Ga0173483_10699321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300015374\|Ga0132255_103542402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664	Open in IMG/M
3300018067\|Ga0184611_1011721	All Organisms → cellular organisms → Bacteria	2520	Open in IMG/M
3300018072\|Ga0184635_10287949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300018082\|Ga0184639_10046752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2231	Open in IMG/M
3300018433\|Ga0066667_11637170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300018466\|Ga0190268_11797694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300018469\|Ga0190270_13297449	Not Available	512	Open in IMG/M
3300020004\|Ga0193755_1140137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300020008\|Ga0193757_1017042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300020199\|Ga0179592_10222111	Not Available	853	Open in IMG/M
3300025910\|Ga0207684_10004891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12509	Open in IMG/M
3300025928\|Ga0207700_11030852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300025945\|Ga0207679_10317052	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300026312\|Ga0209153_1259687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300026327\|Ga0209266_1234492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300026532\|Ga0209160_1090030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1587	Open in IMG/M
3300026538\|Ga0209056_10021057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6361	Open in IMG/M
3300027050\|Ga0209325_1021192	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300027288\|Ga0208525_1001327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2421	Open in IMG/M
3300027583\|Ga0209527_1036376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1105	Open in IMG/M
3300027866\|Ga0209813_10071411	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300027907\|Ga0207428_10311394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164	Open in IMG/M
3300027909\|Ga0209382_10092183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3559	Open in IMG/M
3300028047\|Ga0209526_10003082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11310	Open in IMG/M
3300028536\|Ga0137415_10365274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1247	Open in IMG/M
3300028587\|Ga0247828_11076182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300028587\|Ga0247828_11162783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300028718\|Ga0307307_10239530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300028720\|Ga0307317_10092104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1000	Open in IMG/M
3300028721\|Ga0307315_10101010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300028744\|Ga0307318_10014447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2528	Open in IMG/M
3300031184\|Ga0307499_10205963	Not Available	607	Open in IMG/M
3300031549\|Ga0318571_10179230	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300031549\|Ga0318571_10363796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300031668\|Ga0318542_10023212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2584	Open in IMG/M
3300031668\|Ga0318542_10456314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300031679\|Ga0318561_10039999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2308	Open in IMG/M
3300031740\|Ga0307468_102313517	Not Available	522	Open in IMG/M
3300031763\|Ga0318537_10083267	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300031764\|Ga0318535_10186368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	928	Open in IMG/M
3300031764\|Ga0318535_10477643	Not Available	554	Open in IMG/M
3300031765\|Ga0318554_10067158	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300031793\|Ga0318548_10418747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300031794\|Ga0318503_10032599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1534	Open in IMG/M
3300031797\|Ga0318550_10001190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7843	Open in IMG/M
3300031832\|Ga0318499_10101786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1111	Open in IMG/M
3300031859\|Ga0318527_10518920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300031938\|Ga0308175_102370701	Not Available	595	Open in IMG/M
3300031944\|Ga0310884_10127745	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300032003\|Ga0310897_10288074	Not Available	747	Open in IMG/M
3300032012\|Ga0310902_10454665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	827	Open in IMG/M
3300033004\|Ga0335084_12391571	Not Available	509	Open in IMG/M
3300033290\|Ga0318519_10357058	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.91%
Host-Associated	Host-Associated	14.15%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.13%
Plants	Host-Associated → Plants	14.15%
Aquatic	Environmental → Aquatic	3.77%
Solid Waste	Engineered → Solid Waste	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.49%
Roots	Host-Associated → Plants → Roots	4.72%
Sediment	Environmental → Aquatic → Sediment	3.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%
Grass	Engineered → Solid Waste → Grass	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.38%
Loam	Environmental → Terrestrial → Soil → Loam	19.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.55%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%
Composting	Engineered → Solid Waste → Grass → Composting	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.55%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.66%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_03135230	2140918013	Soil	MQILCTNGVKSVLLELIPSFERARDTKLAVTWGSTHALLKELESGVGGDVAILTAEAID
4PV_00144090	2170459015	Switchgrass, Maize And Mischanthus Litter	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLKELEAGAGG
F24TB_122817691	3300000550	Soil	MDILCTNGVKSVMLDLIPAFERARRTNVAITWGSTNALLKGLESAAVGDVAVLTAEAID
AF_2010_repII_A1DRAFT_101720341	3300000597	Forest Soil	MEILCTNGVKSVMLDLVPAFERVSGTKIVITWGSTAALLKDLEGGAG
JGI10214J12806_105161952	3300000891	Soil	MKVLCTNGLKTVMLDLAPDFERTIGTKVVITWGSANGLLKELETGAGGDLAIL
JGI12630J15595_101055572	3300001545	Forest Soil	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGA
JGI25617J43924_101150582	3300002914	Grasslands Soil	MDILCTNGVKSVMLELVPVFERARSTKIAVTWGSTNALLKDIKGGVGGDVAVLTAEAVDELI
Ga0062590_1014395961	3300004157	Soil	MRVLCTNGLKTVMLDLAPDFERTIGTKAVITWGSANGLLKELETGAGGDLAILTAEA
Ga0066396_100584441	3300004267	Tropical Forest Soil	MDILCTNGVKSVMLELVPAFERAHSTKIAVTWGSTNALLNEIKGGAGGDVAVLTAE
Ga0066680_100907733	3300005174	Soil	MEVLCTNGLKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAILT
Ga0070690_1010409532	3300005330	Switchgrass Rhizosphere	MRVLCTNGLKTVMLDLAPDFEHTIGTKAVITWGSANGLLKELETGAGGDLAILTAEAIDGLIK
Ga0070689_1003312361	3300005340	Switchgrass Rhizosphere	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLKELEAGAGGDLAI
Ga0070710_109553751	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLCTNGLKTVMLDLAPDFERTIGTKVVITWGSANGLLKELETG
Ga0070705_1018666752	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAILTAEAI
Ga0070706_1020588791	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDL
Ga0070707_1010449342	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MEVLCTNGLKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLE
Ga0070698_1017813562	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MEVLCTNGLKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGG
Ga0070698_1017868612	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MEILCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGG
Ga0070699_1013281562	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MEILCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGG
Ga0066702_107628631	3300005575	Soil	MDILCTNGVKSVMLELLPEFERARSTKIAVTWGSTNALLKDIKAGL
Ga0066903_1038462861	3300005764	Tropical Forest Soil	MEILCTNGVKSVMLDLLPAFERARSTKLAVTWGSTNALLKDLGSGAGGDVAILTAEAIDELVN
Ga0066903_1039228022	3300005764	Tropical Forest Soil	MKVICTNGVKSIMLDLVPAFERTSGTKIVITWGSTNGLLKELEGGAVGDLA
Ga0066903_1046934372	3300005764	Tropical Forest Soil	MEMLCTNGVKSLMLDLVPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAILTAEAI
Ga0066903_1075324281	3300005764	Tropical Forest Soil	MEMLCTNGVKSLMLDVVPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAILTA
Ga0075365_101102873	3300006038	Populus Endosphere	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLKELEAGAGGDL
Ga0075026_1002369832	3300006057	Watersheds	MRVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKELETGAGGDLAILTAEAIDG
Ga0075362_101472693	3300006177	Populus Endosphere	MKVLCTNGMKSVMLELVPEFERSTGIKSVITWGSAN
Ga0075367_100851181	3300006178	Populus Endosphere	MRVLCTNGLKTVMLELAPDFERTIGTKAVITWGSANGLLKE
Ga0075369_101313901	3300006186	Populus Endosphere	MRVLCTNGLKTVMLDLAPDFERTIGTKAVITWGSANGLL
Ga0075428_1011360521	3300006844	Populus Rhizosphere	MKVLCTNGMKSVMLELVPEFERSTGIKSVITWGSANGLLKELEAGA
Ga0099828_102754431	3300009089	Vadose Zone Soil	MIGKRERIAAMEVLCTNGVKSVMLDLIPAFERTSGTKIVVTWGSTNGLLKDLE
Ga0075418_104609232	3300009100	Populus Rhizosphere	MQILCTNGVKSVLLELIPSFERARDTKLAVSWGSTHALL
Ga0099792_108646052	3300009143	Vadose Zone Soil	MDILCTNGVKSVMLELVPVFERARSTKIAVTWGSTNALLKDI
Ga0105243_114024171	3300009148	Miscanthus Rhizosphere	MRVLCTNGLKTVMLDLAPDFERAIGTKVTVTWGSANGLLKELETGVG
Ga0075423_123187872	3300009162	Populus Rhizosphere	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLKELEAGAGGDLAILTA
Ga0105242_109486012	3300009176	Miscanthus Rhizosphere	MQILCTNGVKSVLLELIPSFERARDTKLAVTWGSTHALLKDLESG
Ga0126374_105134391	3300009792	Tropical Forest Soil	MKVLCTNGLKSVMLELVPEFERSTGIKSVITWGSANGLLKELEAGAGA
Ga0126384_107734802	3300010046	Tropical Forest Soil	MQILCTNGVKSVLLELISAFERARDTKLAVTWGSTQTLLK
Ga0126373_127329032	3300010048	Tropical Forest Soil	MKVICTNGVKSVMLDLVPAFGRTSGTKISITWGSTNGLLKEV
Ga0126378_115192711	3300010361	Tropical Forest Soil	MKIICTNGVKSVMLDLVPAFERTSGTKISITWGSTN
Ga0126377_136163452	3300010362	Tropical Forest Soil	MKVLCTNGVKSVMLDLAPAFERTSGTKVLITWGATNGLVKELDGGAA
Ga0126379_105642311	3300010366	Tropical Forest Soil	MIGKRERIAAMEILCTNGVKSVMVDLVPTFERTSGTKVMITWGATNSLLKDLEGGAGGDL
Ga0134128_106065212	3300010373	Terrestrial Soil	MQILCTNGVKSVLLELIPSFERARNTKLAVNWGSTHALLKDLESGVGGD
Ga0134126_116101792	3300010396	Terrestrial Soil	MRVLCTNGLKTVMLDLAPDFERTIGSKVVITWGSANGLLKELETGAGGDLAILTAEAIDGLI
Ga0134127_112543072	3300010399	Terrestrial Soil	MQILCTNGVKSVLLELIPSFERARDTKLAVTWGSTHALLKELE
Ga0137388_113777303	3300012189	Vadose Zone Soil	MKVLCTNGVKTLMLDLVLAFERSSGTKLAVTWGSAAGLV
Ga0137367_111772262	3300012353	Vadose Zone Soil	MKMICTNGVKSVMLDLVPAFERTSGTKISITWGSTNGLLRELEGGAGGDLA
Ga0137398_103061033	3300012683	Vadose Zone Soil	MRVLCTNGLKTVMLDLTPAFERSSGTKLAITWGSA
Ga0137359_102033681	3300012923	Vadose Zone Soil	MIGKRERIAAMEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGL
Ga0137416_115287841	3300012927	Vadose Zone Soil	MIGKRERIAAMEVLCTNGVKSVMLDLIPAFERTSGTKIVVTWGSTNGLLKDL
Ga0126369_109689451	3300012971	Tropical Forest Soil	MKVLCTNGVKSVMLDLAPAFERTSGTKVLITWGATNGLVKELDGGAAADL
Ga0157371_114527201	3300013102	Corn Rhizosphere	MKVLCTNGLKTVMLDLAPDFERTIGTKVTVTWGSANSLLKEL
Ga0173483_106993211	3300015077	Soil	MRVLCTNGLKTVMLDLAPDFERTIGTKAVITWGSANGLLKELETGAGGDLAILTAEAI
Ga0132255_1035424022	3300015374	Arabidopsis Rhizosphere	MRVLCTNGLKTVMLDLAPDFEHTIGTKAVITWGSANGLLKELETGAG
Ga0184611_10117211	3300018067	Groundwater Sediment	MRVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKEL
Ga0184635_102879492	3300018072	Groundwater Sediment	MKVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKELE
Ga0184639_100467523	3300018082	Groundwater Sediment	MKVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKELETGASGDLAILT
Ga0066667_116371702	3300018433	Grasslands Soil	MEVLCTNGLKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGGD
Ga0190268_117976942	3300018466	Soil	MRVLCTNGLKTVMLDLSPDFERAIGTKAVITWGSANGLLK
Ga0190270_132974492	3300018469	Soil	MKVLCTNGLKTVMLDLAPDFERAIGTKVTVTWGSA
Ga0193755_11401372	3300020004	Soil	MRVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKE
Ga0193757_10170421	3300020008	Soil	MRVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKELETGAGGDLA
Ga0179592_102221113	3300020199	Vadose Zone Soil	MDILCTNGVKSVMLELVPVFERARSTKIAVTWGSTNALLK
Ga0207684_100048911	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLE
Ga0207700_110308521	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MQILCTNGVKSVLLELIPSFERARDTKLAVTWGSTHALLKDLESGVGGDVAILTAEAIDD
Ga0207679_103170523	3300025945	Corn Rhizosphere	MRVLCTNGLKTVMLDLAPDFERTIGTKVVITWGSA
Ga0209153_12596871	3300026312	Soil	MIAARHVLCTNGVKSVLLELIPAFERARDAKLAVTWGSTQALLKDLETGAGGDVAILTAEAIDD
Ga0209266_12344921	3300026327	Soil	MEILCTNGVKSVMLDLIPAFERAGNTKVATTWGSTNALL
Ga0209160_10900301	3300026532	Soil	MEVLCTNGLKSVMLYLIPAFERTSGTKIVITWGSTNGLLKDLEGGAG
Ga0209056_100210578	3300026538	Soil	MEVLCTNGLKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAIL
Ga0209325_10211922	3300027050	Forest Soil	MEILCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAG
Ga0208525_10013273	3300027288	Soil	MRVLCTNGLKTVMLDLAPDFERTIGTKVVITWGSANGLLKELETGAGGDLAILTAEA
Ga0209527_10363761	3300027583	Forest Soil	MEILCTNGVKSVMLDLIPTFERTSGTKIVITWGSTNGLVKDLEGGAGG
Ga0209813_100714111	3300027866	Populus Endosphere	MRVLCTNGLKTVMLELAPDFERTIGTKAVITWGSANGLLK
Ga0207428_103113942	3300027907	Populus Rhizosphere	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLK
Ga0209382_100921834	3300027909	Populus Rhizosphere	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLQELEAGA
Ga0209526_100030821	3300028047	Forest Soil	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAVLTAEAID
Ga0137415_103652743	3300028536	Vadose Zone Soil	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGG
Ga0247828_110761822	3300028587	Soil	MRVLCTNGLKTVMLDLAPDFERTIGTKVVITWGSANGLLKELETGAGGDLAIL
Ga0247828_111627832	3300028587	Soil	MRVLCTNGLKTVMLDLAPDFERTIGTKVVITWGSANGLLKELE
Ga0307307_102395301	3300028718	Soil	MQILCTNGVKSVLLELIPSFERARDTKLAVTWGSTLALLKDLESGGGGDVAIL
Ga0307317_100921041	3300028720	Soil	MRVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKELETGAGGD
Ga0307315_101010101	3300028721	Soil	MRVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLK
Ga0307318_100144471	3300028744	Soil	MRVLCTNGLKTVMLDLSPDFERTIGTKVVITWGSANGLLKELETGAGG
Ga0307499_102059631	3300031184	Soil	MKVLCTNGLKTVMLDLAPDFERAIGTKVTVTWGSANG
Ga0318571_101792302	3300031549	Soil	MEILCTNGVKSVMLDLLPAFERARSTKLAVTWGSTNALVKDLGSG
Ga0318571_103637961	3300031549	Soil	MEILCTNGVKSVMLDLVPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAILSAEAI
Ga0318542_100232124	3300031668	Soil	MKVICTNGVKSIMLDLVPAFERTSGTKIVITWGSTNGLLKE
Ga0318542_104563142	3300031668	Soil	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTN
Ga0318561_100399991	3300031679	Soil	MEILCTNGVKSVMLDLLPAFERARSTKLAVTWGSTNA
Ga0307468_1023135172	3300031740	Hardwood Forest Soil	MKILCTNGLKTVMLDLMPAFERASGTKVVTVWGSANGLLKELESGAS
Ga0318537_100832673	3300031763	Soil	MEILCTNGVKSVMLDLLPAFERARSTKLAVTWGSTNALVKDLGSGAGGDVAILTAEAIDE
Ga0318535_101863683	3300031764	Soil	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLK
Ga0318535_104776432	3300031764	Soil	MKIVCTNGVKSVMLDLVSQFERRSATKLTVVWGATNTLIKELEGGADGD
Ga0318554_100671581	3300031765	Soil	MKVICTNGVKSVMLDLAPAFERTSGTKISITWGSTNGLLKELEGGAGGDLAILTAEA
Ga0318548_104187471	3300031793	Soil	MEVLCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGADGDLAVLTAEAI
Ga0318503_100325993	3300031794	Soil	MEILCTNGVKSVMLDLVPAFERTSGTKIVITWGSTNGLLT
Ga0318550_100011901	3300031797	Soil	MKIVCTNGVKSVMLDLVSQFERRSATKLTVVWGATNTL
Ga0318499_101017863	3300031832	Soil	MEVLCTNGVKSVMLDLIPAFERASGTKIVITWGSTNGLLK
Ga0318527_105189202	3300031859	Soil	MEILCTNGVKSVMLDLIPAFERTSGTKIVITWGSTNGLLKDLEGGAGGDLAVLT
Ga0308175_1023707011	3300031938	Soil	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLQELEAGAGGD
Ga0310884_101277451	3300031944	Soil	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSANGLLKELEAG
Ga0310897_102880741	3300032003	Soil	MRVLCTNGLKTVMLDLAPEFERAIGTKAVITWGSAN
Ga0310902_104546652	3300032012	Soil	MRVLCTNGLKTVMLDLAPDFERTIGTKVVITWGSANGLLKELETGAGGDLAILTAEAID
Ga0335084_123915712	3300033004	Soil	MKVLCTNGLKTVMLELASHFEGAIGTKPVMTWGSAAGLVKELDG
Ga0318519_103570582	3300033290	Soil	MEILCTNGVKSVMLDLVPAFERTSGTKIVITWGSTNALLKDLEGGADGDLAVLTAEAIDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094130

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences