Metagenome / Metatranscriptome Family F093858

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093858
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	40 residues
Representative Sequence	MIDLHDPSAVCRSLGYFLDFLVMTVPVISLAIFAWRIAR
Number of Associated Samples	56
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.42 %
% of genes near scaffold ends (potentially truncated)	10.38 %
% of genes from short scaffolds (< 2000 bps)	69.81 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.755 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (29.245 % of family members)
Environment Ontology (ENVO)	Unclassified (53.774 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (55.660 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.76% β-sheet: 0.00% Coil/Unstructured: 52.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF12728	HTH_17	50.00
PF13539	Peptidase_M15_4	6.60
PF04448	DUF551	5.66
PF03837	RecT	3.77
PF13589	HATPase_c_3	0.94
PF02498	Bro-N	0.94
PF13481	AAA_25	0.94
PF13479	AAA_24	0.94
PF12684	DUF3799	0.94
PF08800	VirE_N	0.94
PF00574	CLP_protease	0.94
PF00589	Phage_integrase	0.94
PF12705	PDDEXK_1	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3723	Recombinational DNA repair protein RecT	Replication, recombination and repair [L]	3.77
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.89
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.89
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG3617	Prophage antirepressor	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
All Organisms	root	All Organisms	29.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
cellular organisms	root	All Organisms → cellular organisms	22.64 %
Viruses	superkingdom	All Organisms → Viruses	6.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	22.64 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	6.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	9.43 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	6.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7.55 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	6.60 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	7.55 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6.60 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	7.55 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	6.60 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	7.55 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6.60 %
Lysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Roseibacillus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus	7.55 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6.60 %
unclassified Lysobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.75 %
Roseibacillus ishigakijimensis	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	7.55 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6.60 %
Lysobacter sp. K5869	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. K5869	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000756\|JGI12421J11937_10055613	Not Available	1258	Open in IMG/M
3300000929\|NpDRAFT_10082752	Not Available	964	Open in IMG/M
3300003413\|JGI25922J50271_10000306	All Organisms → cellular organisms → Bacteria	14640	Open in IMG/M
3300003413\|JGI25922J50271_10003965	All Organisms → cellular organisms → Bacteria	4231	Open in IMG/M
3300004240\|Ga0007787_10082816	Not Available	1479	Open in IMG/M
3300005581\|Ga0049081_10064854	All Organisms → cellular organisms → Bacteria → PVC group	1374	Open in IMG/M
3300005581\|Ga0049081_10094150	Not Available	1119	Open in IMG/M
3300005581\|Ga0049081_10119323	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	976	Open in IMG/M
3300005581\|Ga0049081_10124076	Not Available	954	Open in IMG/M
3300005581\|Ga0049081_10135091	Not Available	908	Open in IMG/M
3300005581\|Ga0049081_10152681	Not Available	844	Open in IMG/M
3300005581\|Ga0049081_10216460	Not Available	682	Open in IMG/M
3300005581\|Ga0049081_10218086	Not Available	679	Open in IMG/M
3300005581\|Ga0049081_10228994	Not Available	658	Open in IMG/M
3300005581\|Ga0049081_10230606	Not Available	655	Open in IMG/M
3300005581\|Ga0049081_10267033	Not Available	596	Open in IMG/M
3300005581\|Ga0049081_10280984	Not Available	577	Open in IMG/M
3300005581\|Ga0049081_10319732	Not Available	531	Open in IMG/M
3300005582\|Ga0049080_10033425	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300005582\|Ga0049080_10062534	Not Available	1280	Open in IMG/M
3300005582\|Ga0049080_10185832	Not Available	689	Open in IMG/M
3300005582\|Ga0049080_10198325	Not Available	664	Open in IMG/M
3300005582\|Ga0049080_10298924	Not Available	519	Open in IMG/M
3300006030\|Ga0075470_10031370	Not Available	1644	Open in IMG/M
3300006484\|Ga0070744_10053911	Not Available	1177	Open in IMG/M
3300006641\|Ga0075471_10063729	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2026	Open in IMG/M
3300006641\|Ga0075471_10091853	Not Available	1635	Open in IMG/M
3300006875\|Ga0075473_10016820	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300007545\|Ga0102873_1268281	Not Available	512	Open in IMG/M
3300007550\|Ga0102880_1127282	Not Available	668	Open in IMG/M
3300007551\|Ga0102881_1053141	Not Available	1133	Open in IMG/M
3300007551\|Ga0102881_1215132	Not Available	532	Open in IMG/M
3300007555\|Ga0102817_1030876	Not Available	1180	Open in IMG/M
3300007559\|Ga0102828_1007399	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2179	Open in IMG/M
3300007559\|Ga0102828_1020547	Not Available	1432	Open in IMG/M
3300007559\|Ga0102828_1035602	Not Available	1129	Open in IMG/M
3300007560\|Ga0102913_1037038	Not Available	1596	Open in IMG/M
3300007590\|Ga0102917_1022495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2177	Open in IMG/M
3300007618\|Ga0102896_1084780	Not Available	1039	Open in IMG/M
3300007634\|Ga0102901_1056536	Not Available	1134	Open in IMG/M
3300007661\|Ga0102866_1140009	Not Available	611	Open in IMG/M
3300008999\|Ga0102816_1179172	Not Available	660	Open in IMG/M
3300008999\|Ga0102816_1230085	Not Available	582	Open in IMG/M
3300009026\|Ga0102829_1012540	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2353	Open in IMG/M
3300009026\|Ga0102829_1095159	Not Available	926	Open in IMG/M
3300009158\|Ga0114977_10065109	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2240	Open in IMG/M
3300009163\|Ga0114970_10005435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9184	Open in IMG/M
3300009185\|Ga0114971_10004507	All Organisms → cellular organisms → Bacteria	9416	Open in IMG/M
3300010309\|Ga0102890_1040457	Not Available	916	Open in IMG/M
3300012017\|Ga0153801_1040779	Not Available	820	Open in IMG/M
3300013372\|Ga0177922_10028060	Not Available	690	Open in IMG/M
3300013372\|Ga0177922_11074547	Not Available	651	Open in IMG/M
3300013372\|Ga0177922_11186582	Not Available	967	Open in IMG/M
3300020151\|Ga0211736_10628059	Not Available	730	Open in IMG/M
3300020161\|Ga0211726_10113992	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1091	Open in IMG/M
3300020161\|Ga0211726_10716115	Not Available	1209	Open in IMG/M
3300020162\|Ga0211735_10631144	Not Available	1693	Open in IMG/M
3300020162\|Ga0211735_11042160	All Organisms → cellular organisms → Bacteria	2740	Open in IMG/M
3300021325\|Ga0210301_1017392	Not Available	788	Open in IMG/M
3300021328\|Ga0210298_1178313	Not Available	1280	Open in IMG/M
3300023184\|Ga0214919_10029246	All Organisms → cellular organisms → Bacteria	5807	Open in IMG/M
3300023184\|Ga0214919_10061380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	3479	Open in IMG/M
3300023184\|Ga0214919_10066520	Not Available	3291	Open in IMG/M
3300023184\|Ga0214919_10098096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2508	Open in IMG/M
3300023184\|Ga0214919_10101867	Not Available	2442	Open in IMG/M
3300023184\|Ga0214919_10106889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2361	Open in IMG/M
3300023184\|Ga0214919_10738729	Not Available	549	Open in IMG/M
3300024343\|Ga0244777_10049731	Not Available	2679	Open in IMG/M
3300024346\|Ga0244775_10307903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. K5869	1312	Open in IMG/M
3300024346\|Ga0244775_10505103	Not Available	987	Open in IMG/M
3300024346\|Ga0244775_11213372	Not Available	587	Open in IMG/M
3300024348\|Ga0244776_10041528	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	3643	Open in IMG/M
3300024348\|Ga0244776_10504844	Not Available	780	Open in IMG/M
3300025732\|Ga0208784_1004862	Not Available	4941	Open in IMG/M
3300025872\|Ga0208783_10019805	All Organisms → cellular organisms → Bacteria	3313	Open in IMG/M
3300025872\|Ga0208783_10358175	Not Available	570	Open in IMG/M
3300027236\|Ga0208026_1033020	Not Available	733	Open in IMG/M
3300027263\|Ga0208446_1019142	Not Available	1221	Open in IMG/M
3300027304\|Ga0208810_1082918	Not Available	665	Open in IMG/M
3300027311\|Ga0208812_1061014	Not Available	775	Open in IMG/M
3300027320\|Ga0208923_1011672	Not Available	1540	Open in IMG/M
3300027320\|Ga0208923_1011738	All Organisms → cellular organisms → Bacteria → PVC group	1535	Open in IMG/M
3300027320\|Ga0208923_1042128	Not Available	814	Open in IMG/M
3300027531\|Ga0208682_1042966	Not Available	1179	Open in IMG/M
3300027608\|Ga0208974_1002252	Not Available	7245	Open in IMG/M
3300027608\|Ga0208974_1057706	Not Available	1100	Open in IMG/M
3300027659\|Ga0208975_1001221	All Organisms → cellular organisms → Bacteria	11167	Open in IMG/M
3300027659\|Ga0208975_1001955	All Organisms → cellular organisms → Bacteria	8373	Open in IMG/M
3300027659\|Ga0208975_1012095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2945	Open in IMG/M
3300027659\|Ga0208975_1083656	Not Available	941	Open in IMG/M
3300027659\|Ga0208975_1125993	Not Available	728	Open in IMG/M
3300027659\|Ga0208975_1166770	Not Available	606	Open in IMG/M
3300027659\|Ga0208975_1208000	Not Available	520	Open in IMG/M
3300027679\|Ga0209769_1119042	Not Available	847	Open in IMG/M
3300027736\|Ga0209190_1000182	Not Available	44466	Open in IMG/M
3300027746\|Ga0209597_1004082	All Organisms → cellular organisms → Bacteria	8980	Open in IMG/M
3300027746\|Ga0209597_1076305	Not Available	1574	Open in IMG/M
3300027769\|Ga0209770_10000327	All Organisms → cellular organisms → Bacteria	26609	Open in IMG/M
3300027769\|Ga0209770_10003411	All Organisms → cellular organisms → Bacteria	7758	Open in IMG/M
3300027797\|Ga0209107_10013915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	4562	Open in IMG/M
3300027797\|Ga0209107_10108505	Not Available	1475	Open in IMG/M
3300027892\|Ga0209550_10073326	Not Available	2652	Open in IMG/M
3300033995\|Ga0335003_0055199	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseibacillus → Roseibacillus ishigakijimensis	2126	Open in IMG/M
3300033995\|Ga0335003_0186207	Not Available	1005	Open in IMG/M
3300034107\|Ga0335037_0531035	Not Available	627	Open in IMG/M
3300034110\|Ga0335055_0120781	Not Available	1192	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	59.43%
Marine	Environmental → Aquatic → Marine	40.57%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	34.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	29.25%
Lake	Environmental → Aquatic → Freshwater → Lake	24.53%
Coastal	Environmental → Aquatic → Marine → Coastal	6.60%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.77%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	32.08%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	29.25%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	24.53%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.77%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.83%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	29.25%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	25.47%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.38%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.49%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	6.60%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	6.60%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.66%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	3.77%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	2.83%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental	Open in IMG/M
3300007550	Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3	Environmental	Open in IMG/M
3300007551	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007560	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02	Environmental	Open in IMG/M
3300007590	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02	Environmental	Open in IMG/M
3300007618	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-02	Environmental	Open in IMG/M
3300007634	Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02	Environmental	Open in IMG/M
3300007661	Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3	Environmental	Open in IMG/M
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental	Open in IMG/M
3300009185	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG	Environmental	Open in IMG/M
3300010309	Estuarine microbial communities from the Columbia River estuary - metaG 1552A-3	Environmental	Open in IMG/M
3300012017	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental	Open in IMG/M
3300021325	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021328	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R877 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025872	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027236	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (SPAdes)	Environmental	Open in IMG/M
3300027263	Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3 (SPAdes)	Environmental	Open in IMG/M
3300027304	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02 (SPAdes)	Environmental	Open in IMG/M
3300027311	Estuarine microbial communities from the Columbia River estuary - metaG 1569-02 (SPAdes)	Environmental	Open in IMG/M
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental	Open in IMG/M
3300027531	Estuarine microbial communities from the Columbia River estuary - metaG 1568-02 (SPAdes)	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027746	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300034107	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133	Environmental	Open in IMG/M
3300034110	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_100556133	3300000756	Freshwater And Sediment	MIDLHDPSAVCRSIGFFLDFLTLTVPVISMAFFAWRLAR*
NpDRAFT_100827522	3300000929	Freshwater And Marine	MIDLNDPDAVCRSIGYFLDFLTIFVPPVALAFTAWRIAR*
JGI25922J50271_1000030619	3300003413	Freshwater Lake	MIDFHDPSAVCRSIGYFLDFLTITVPVISLAIFAWRIAR*
JGI25922J50271_100039659	3300003413	Freshwater Lake	MIDLHDPSAVCRSIGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0007787_100828165	3300004240	Freshwater Lake	MIDLHDPQTICRSIGFFLDFLTLTVPVISMAIFAWRLAR*
Ga0049081_100648545	3300005581	Freshwater Lentic	MIDLHDPSAVCRSLGYFLDFLVIFVPPVALAFTAWRIAR*
Ga0049081_100941503	3300005581	Freshwater Lentic	MIDLHDPQNVCRSLGYFLDFLVIFVPPVALAFTAWRIAR*
Ga0049081_101193233	3300005581	Freshwater Lentic	MIDLNDPSAVCRSIGYFLDFLVMFVPVLSLAILGRRIAR*
Ga0049081_101240764	3300005581	Freshwater Lentic	MIDLNDPSAVCRSLGYFLDFLTLTVPVLSLALLARRIAR*
Ga0049081_101350913	3300005581	Freshwater Lentic	MIDIHDPSAVCRSLGYFLEFLVMFVPPVALAFTAWRIAR*
Ga0049081_101526812	3300005581	Freshwater Lentic	MIDIHDPSAVCRSIGYFLDFLTMTVPVISLAIFAWRIAR*
Ga0049081_102164602	3300005581	Freshwater Lentic	MIDLTDPSAVCRSLGYFLDFITLTVPVISLALLARRIAR*
Ga0049081_102180861	3300005581	Freshwater Lentic	MIDLHDPQTICRSIGFFLDFLTLTVPVISMAFFAWRLAR*
Ga0049081_102289944	3300005581	Freshwater Lentic	MIDLNDPSAVCRSLGYFLDFLFITVPVISLVLVARRIAR*
Ga0049081_102306063	3300005581	Freshwater Lentic	MIDLNDPSAVCRSLGYFLDFLTLTVPVLSLALVARRIAR*
Ga0049081_102670333	3300005581	Freshwater Lentic	EMIDIHDPSAVCRSLGYFLDFLVIFVPPVALAFTAWRIAR*
Ga0049081_102809842	3300005581	Freshwater Lentic	MIDFHDPQNVCRSLGYFLDFLVMTVPILSLSIFAWRIAR*
Ga0049081_103197323	3300005581	Freshwater Lentic	MIDLHDPSAVCRSIGYFLDFLIMTVPILSLSIFAWRIAR*
Ga0049080_100334253	3300005582	Freshwater Lentic	MIDLHDPSAVCRSLGYFLDFLTLTVPVLSLALLARRIAR*
Ga0049080_100625342	3300005582	Freshwater Lentic	MIDLNDPSAVCRSLGYFLDFLTMTVPVLSLALIARRIAR*
Ga0049080_101858323	3300005582	Freshwater Lentic	MIDLTDPSAVCRSLGYFLDFLTLTVPVLSLALLARRIAR*
Ga0049080_101983253	3300005582	Freshwater Lentic	MIDLHDPSAVCRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0049080_102989242	3300005582	Freshwater Lentic	MIDLNDPSAVCRSLGYFLDFLFITVPVLSLALLARRIAR*
Ga0075470_100313705	3300006030	Aqueous	MIDLHDPTAVCRSLGYFLDFLAITVPVISLALIARRIAR*
Ga0070744_100539114	3300006484	Estuarine	MIDLHDPSAVCRSLGFFLDFLVMTVPVLSLAIFAWRIAR*
Ga0075471_100637295	3300006641	Aqueous	MIDIHDPTAVCRALGYFLDFLTITVPVISLALIARRIAR*
Ga0075471_100918536	3300006641	Aqueous	MIDLHDPQTICRSIGYFLDFLTLTVPVVSMALLAWRIAR*
Ga0075473_100168201	3300006875	Aqueous	MIDLHDPQFICRSIGYFLDFLTISVPVISMAIFAWRIAR*
Ga0102873_12682812	3300007545	Estuarine	MIDLHDPSAVCRSIGYFLDFLVIFVPILSLSIFAWRIAR*
Ga0102880_11272822	3300007550	Estuarine	MIDLHDPFAVCRSIGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0102881_10531412	3300007551	Estuarine	MIDLHDPSAVCRSIGYFLDFLVIFVPPVALAFTAWRIAR*
Ga0102881_12151321	3300007551	Estuarine	QRSQPRNREGKMIDLNDPASVCRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0102817_10308763	3300007555	Estuarine	MIDLNDPQTVCRSIGYFLDFLTMTVPVISMAFFAWRLAR*
Ga0102828_10073992	3300007559	Estuarine	MIDLHDPQAVCRSIGYFLDFLTMTVPVISMAFFAWRLAR*
Ga0102828_10205473	3300007559	Estuarine	MIDLNDPASVCRSLGYFLDFLTLTVPVLSLAIFAWRIAR*
Ga0102828_10356022	3300007559	Estuarine	MIDLHDPASVCRSIGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0102913_10370383	3300007560	Estuarine	MIDLNDPASVCRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0102917_10224956	3300007590	Estuarine	MIDLHDQQTICRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0102896_10847804	3300007618	Estuarine	MIDLHDPSAVCRSIGYFLDFLVIFVPILSLSIFAWR
Ga0102901_10565365	3300007634	Estuarine	MIDLHDPFAVCRSIGYFLDFLVIFVPILSLSIFAWRIAR*
Ga0102866_11400091	3300007661	Estuarine	RSQPRNREGKMIDLNDPASVCRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0102816_11791721	3300008999	Estuarine	MIDLHDPASVCRSIGYFLDFLVIFVPPVALALLARRIAR*
Ga0102816_12300851	3300008999	Estuarine	KQEGEMIDLNDPASVCRSLGYFLDFLTLTVPVLSLAIFAWRIAR*
Ga0102829_10125402	3300009026	Estuarine	MIDLHDPASVCRSIGYFLDFLTMTVPVLSLAIFAWRIAR*
Ga0102829_10951592	3300009026	Estuarine	MIDLHDPASVCRSLGYFLDFLVMFVPPVALAIFAWRIAR*
Ga0114977_100651095	3300009158	Freshwater Lake	MIDLHDPSAVCRSIGYFLDFLTLTVPVLSLALIARRIAR*
Ga0114970_1000543512	3300009163	Freshwater Lake	MIDLNDPAAVCRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0114971_100045079	3300009185	Freshwater Lake	MIDLHDPSAVCRSLGYFLDFLVMTVPILSLSIFAWRIAR*
Ga0102890_10404574	3300010309	Estuarine	MIDLHDPVAVCRSIGYFLDFLVIFVPPVALAFTAWRIAR*
Ga0153801_10407792	3300012017	Freshwater	MIDLNDPSAVCRSLGYFLDFLVMFVPPVALAFTAWRIAR*
Ga0177922_100280604	3300013372	Freshwater	MIDLNDPSAVCRSLGYFLEFLVMFVPPVALAFTAWRIAR*
Ga0177922_110745472	3300013372	Freshwater	MIDLNDPSAVCRSLGYFLDFLVIFVPPVALAFTAWRIAR*
Ga0177922_111865821	3300013372	Freshwater	MIDLHDPQTICRSIGFFLDFLVLTVPVISMAIFAWRLAR*
Ga0211736_106280591	3300020151	Freshwater	MIDLTDPSAVCRSLGYFLDFLTMTVPVLSLALLARRIAR
Ga0211726_101139924	3300020161	Freshwater	MIDLYDPSAVCRSLGYFLDFLAMTVPVISLALLARRIAR
Ga0211726_107161153	3300020161	Freshwater	MIDLNDPSAVCRSLGYFLDFLTMTVPVISLALLARRIAR
Ga0211735_106311442	3300020162	Freshwater	MIDLHDPQTICRSIGFFLDFLTLTVPVISMSLLAWRIAR
Ga0211735_110421608	3300020162	Freshwater	MIDLHDPQSICRSIGYFLDFLVLTVPVISMAIFAWRLAR
Ga0210301_10173922	3300021325	Estuarine	MIDLNDPQTVCRSLSYLLDFLVMTVPVLSLAIFAWRIAR
Ga0210298_11783134	3300021328	Estuarine	MIDLNDPSAVCRSIGYFLDFLTMTVPVLSLAIFAWRIAR
Ga0214919_1002924610	3300023184	Freshwater	MIDIHDPAAVCRSIGYFLDFLTLTLPVISLALIARRIAR
Ga0214919_100613804	3300023184	Freshwater	MIDLHDPAAVCRSIGYFLDFLTITVPVISLAILARRIAR
Ga0214919_100665206	3300023184	Freshwater	MIDLHDPSAVCRSLGYFLDFLVITVPVISMAVFAWRLAR
Ga0214919_100980966	3300023184	Freshwater	MIDLHDPDAVCRSIGYFLDFLTMTVPVLSLVLIARRIAR
Ga0214919_101018672	3300023184	Freshwater	MIDLNDPDAVCRSIGYFLDFLTMTVPVLSLVLIAWRIAR
Ga0214919_101068891	3300023184	Freshwater	KGCTEMIDIHDPAAVCRSIGYFLDFLTLTVPVLSLVLIARRIAR
Ga0214919_107387292	3300023184	Freshwater	MIDLHDPDAVCRSLGYFLDFLTLTVPVISLVLIARRIAR
Ga0244777_100497316	3300024343	Estuarine	MIDLHDPFAVCRSIGYFLDFLVIFVPPVALAFTAWRIAR
Ga0244775_103079033	3300024346	Estuarine	MIDLHDPQAVCRSIGYFLDFLTMTVPVISMAFFAWRLAR
Ga0244775_105051032	3300024346	Estuarine	MIDLNDPASVCRSLGYFLDFLTLTVPVLSLAIFAWRIAR
Ga0244775_112133723	3300024346	Estuarine	MIDLHDPASVCRSIGYFLDFLVIFVPPVALAIFAWRIAR
Ga0244776_100415284	3300024348	Estuarine	MIDLHDPSAVCRSIGYFLDFLVIFVPILSLSIFAWRIAR
Ga0244776_105048442	3300024348	Estuarine	MIDLHDPSAVCRSLGYFLDFLVMFVPVLSLAILARRIAR
Ga0208784_100486212	3300025732	Aqueous	MIDLHDPTAVCRSLGYFLDFLAITVPVISLALIARRIAR
Ga0208783_100198054	3300025872	Aqueous	MIDLHDPQFICRSIGYFLDFLTISVPVISMAIFAWRIAR
Ga0208783_103581751	3300025872	Aqueous	KYFMIDLHDPQTICRSIGYFLDFLTLTVPVVSMALLAWRIAR
Ga0208026_10330203	3300027236	Estuarine	MIDLHDPSAVCRSIGYFLDFLVIFVPPVALAFTAWRIAR
Ga0208446_10191423	3300027263	Estuarine	MIDLHDPFAVCRSIGYFLDFLVMFVPPVALAFTAWRIAR
Ga0208810_10829183	3300027304	Estuarine	MIDLNDPASVCRSLGYFLDFLVMFVPPVALAFTAWRIAR
Ga0208812_10610145	3300027311	Estuarine	MIDLHDQQTICRSLGYFLDFLVMFVPPVALAFTAWRI
Ga0208923_10116725	3300027320	Estuarine	MIDLHDPSAVCRSIGFFLDFLTLTVPVISMAFFAWRLAR
Ga0208923_10117384	3300027320	Estuarine	MIDLHDPASVCRSIGYFLDFLVMFVPPVALAFTAWRIAR
Ga0208923_10421282	3300027320	Estuarine	MIDLHDPQTICRSIGFFLDFLTLTVPVISMAIFAWRLAR
Ga0208682_10429662	3300027531	Estuarine	MIDLHDQQTICRSLGYFLDFLVMFVPPVALAFTAWRIAR
Ga0208974_10022524	3300027608	Freshwater Lentic	MIDLHDPSAVCRSLGYFLDFLTMTVPVLSLALIARRIAR
Ga0208974_10577062	3300027608	Freshwater Lentic	MIDLNDPSAVCRSLGYFLDFLVIFVPPVALAFTAWRIAR
Ga0208975_100122113	3300027659	Freshwater Lentic	MIDLHDPSAVCRSLGYFLDFLVIFVPPVALAFTAWRIAR
Ga0208975_100195512	3300027659	Freshwater Lentic	MIDLHDPSAVCRSLGYFLDFLTLTVPVLSLALLARRIAR
Ga0208975_10120956	3300027659	Freshwater Lentic	MIDIHDPSAVCRSIGYFLDFLTMTVPVISLAIFAWRIAR
Ga0208975_10836565	3300027659	Freshwater Lentic	MIDLNDPSAVCRSLGYFLDFLTLTVPVLSLALVARRIAR
Ga0208975_11259933	3300027659	Freshwater Lentic	MIDLHDPQNVCRSLGYFLDFLVIFVPPVALAFTAWRIAR
Ga0208975_11667702	3300027659	Freshwater Lentic	MIDFHDPQNVCRSLGYFLDFLVMTVPILSLSIFAWRIAR
Ga0208975_12080003	3300027659	Freshwater Lentic	RNREGQMIDLHDPQNVCRSLGYFLDFLVMFVPPVALAFTAWRIAR
Ga0209769_11190424	3300027679	Freshwater Lake	MIDLHDPQTICRSIGFFLDFLTLTLPVISMAFFAWRLAR
Ga0209190_100018232	3300027736	Freshwater Lake	VDLRPDRRDLKQETLEMIDLNDPAAVCRSLGYFLDFLVMFVPPVALAFTAWRIAR
Ga0209597_10040829	3300027746	Freshwater Lake	MIDLHDPSAVCRSLGYFLDFLVMTVPILSLSIFAWRIAR
Ga0209597_10763054	3300027746	Freshwater Lake	MIDLNDPSEVCRSIGYFLDFLTMTVPVLSLALIARRIAR
Ga0209770_1000032730	3300027769	Freshwater Lake	MIDFHDPSAVCRSIGYFLDFLTITVPVISLAIFAWRIAR
Ga0209770_100034112	3300027769	Freshwater Lake	MIDLHDPSAVCRSIGYFLDFLVMFVPPVALAFTAWRIAR
Ga0209107_1001391510	3300027797	Freshwater And Sediment	MIDLHDPASVCRSLGYFLDFLVIFVPPVALAFTAWRIAR
Ga0209107_101085055	3300027797	Freshwater And Sediment	QPRNREGQMIDLHDPQTICRSLGYFLDFLTIFVPPVALAFTAWRIAR
Ga0209550_100733263	3300027892	Freshwater Lake	MIDLHDPSAVCRSLGYFLDFLVMTVPVISLAIFAWRIAR
Ga0335003_0055199_883_1002	3300033995	Freshwater	MIDLHDPAAVCRSLGYFLDFLTLTVPVLSLALIARRIAR
Ga0335003_0186207_377_496	3300033995	Freshwater	MIDLNDPSAVCRSIGYFLDFLVMTVPPVALAFTAWRIAR
Ga0335037_0531035_160_279	3300034107	Freshwater	MIDLHDPQNVCRSLGYFLEFLTITVPVISLALIARRIAR
Ga0335055_0120781_350_469	3300034110	Freshwater	MIDLHDPQTICRSIGFFLDFLTLTVPVISMAFTAWRIAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093858

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences