Metagenome / Metatranscriptome Family F093669

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093669
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	148 residues
Representative Sequence	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYLLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFGEASACRATLGEAGLRARLAVPLVVG
Number of Associated Samples	94
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	43.75 %
% of genes near scaffold ends (potentially truncated)	80.19 %
% of genes from short scaffolds (< 2000 bps)	82.08 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.566 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.924 % of family members)
Environment Ontology (ENVO)	Unclassified (36.792 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.943 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.64% β-sheet: 17.54% Coil/Unstructured: 60.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01590	GAF	7.55
PF04191	PEMT	2.83
PF00723	Glyco_hydro_15	2.83
PF13185	GAF_2	1.89
PF12680	SnoaL_2	1.89
PF00111	Fer2	1.89
PF00589	Phage_integrase	1.89
PF13561	adh_short_C2	0.94
PF01979	Amidohydro_1	0.94
PF13602	ADH_zinc_N_2	0.94
PF12833	HTH_18	0.94
PF02954	HTH_8	0.94
PF00211	Guanylate_cyc	0.94
PF03136	Pup_ligase	0.94
PF03243	MerB	0.94
PF04909	Amidohydro_2	0.94
PF01799	Fer2_2	0.94
PF13358	DDE_3	0.94
PF02518	HATPase_c	0.94
PF02899	Phage_int_SAM_1	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	2.83
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.94
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.94
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.57 %
Unclassified	root	N/A	9.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.57 %
Unclassified	root	N/A	9.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.57 %
Unclassified	root	N/A	9.43 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	76.42 %
Unclassified	root	N/A	9.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	76.42 %
Unclassified	root	N/A	9.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	76.42 %
Unclassified	root	N/A	9.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	76.42 %
Unclassified	root	N/A	9.43 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	76.42 %
Unclassified	root	N/A	9.43 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	76.42 %
Unclassified	root	N/A	9.43 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	76.42 %
Unclassified	root	N/A	9.43 %
Rhodococcus opacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101668925	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300002557\|JGI25381J37097_1046980	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	717	Open in IMG/M
3300002562\|JGI25382J37095_10178006	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	658	Open in IMG/M
3300002886\|JGI25612J43240_1082626	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300002908\|JGI25382J43887_10082094	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300002915\|JGI25387J43893_1059866	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300005177\|Ga0066690_10561657	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	763	Open in IMG/M
3300005180\|Ga0066685_10949389	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	571	Open in IMG/M
3300005181\|Ga0066678_10228560	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1197	Open in IMG/M
3300005181\|Ga0066678_10879423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300005187\|Ga0066675_10692841	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300005347\|Ga0070668_100366870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1222	Open in IMG/M
3300005441\|Ga0070700_100787766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	764	Open in IMG/M
3300005445\|Ga0070708_100151974	All Organisms → cellular organisms → Bacteria	2153	Open in IMG/M
3300005445\|Ga0070708_101062752	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	758	Open in IMG/M
3300005446\|Ga0066686_10981887	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	549	Open in IMG/M
3300005457\|Ga0070662_101964835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300005467\|Ga0070706_101711553	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300005471\|Ga0070698_101624596	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	598	Open in IMG/M
3300005518\|Ga0070699_100320822	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1392	Open in IMG/M
3300005518\|Ga0070699_100427816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1199	Open in IMG/M
3300005543\|Ga0070672_101835589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300005555\|Ga0066692_10366502	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	913	Open in IMG/M
3300005568\|Ga0066703_10179290	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300005598\|Ga0066706_10697934	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	806	Open in IMG/M
3300005718\|Ga0068866_11106841	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	568	Open in IMG/M
3300005844\|Ga0068862_100752788	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	948	Open in IMG/M
3300006755\|Ga0079222_11864718	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300006755\|Ga0079222_12077852	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300006796\|Ga0066665_11007692	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300006806\|Ga0079220_11542090	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300006844\|Ga0075428_100783952	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1013	Open in IMG/M
3300006847\|Ga0075431_101222394	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	714	Open in IMG/M
3300006852\|Ga0075433_10803647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	822	Open in IMG/M
3300006854\|Ga0075425_100107745	All Organisms → cellular organisms → Bacteria	3174	Open in IMG/M
3300006854\|Ga0075425_102082953	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	633	Open in IMG/M
3300006903\|Ga0075426_10065353	All Organisms → cellular organisms → Bacteria	2599	Open in IMG/M
3300006904\|Ga0075424_100340254	All Organisms → cellular organisms → Bacteria	1598	Open in IMG/M
3300006914\|Ga0075436_100519286	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	872	Open in IMG/M
3300006914\|Ga0075436_101483424	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	515	Open in IMG/M
3300006969\|Ga0075419_10352231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1001	Open in IMG/M
3300007255\|Ga0099791_10226699	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	884	Open in IMG/M
3300007265\|Ga0099794_10643176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	563	Open in IMG/M
3300009012\|Ga0066710_101158652	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1197	Open in IMG/M
3300009012\|Ga0066710_104431385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
3300009090\|Ga0099827_10113221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2174	Open in IMG/M
3300009094\|Ga0111539_10828907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1076	Open in IMG/M
3300009137\|Ga0066709_100163134	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2871	Open in IMG/M
3300009143\|Ga0099792_11144809	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300009147\|Ga0114129_10106091	All Organisms → cellular organisms → Bacteria	3882	Open in IMG/M
3300009147\|Ga0114129_12386826	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300009156\|Ga0111538_11011378	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1052	Open in IMG/M
3300010336\|Ga0134071_10506631	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300010403\|Ga0134123_10083661	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300012199\|Ga0137383_11355937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300012206\|Ga0137380_11182294	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	650	Open in IMG/M
3300012207\|Ga0137381_11114665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	679	Open in IMG/M
3300012356\|Ga0137371_10221495	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300012359\|Ga0137385_10050838	All Organisms → cellular organisms → Bacteria	3705	Open in IMG/M
3300012410\|Ga0134060_1510150	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300012582\|Ga0137358_10648378	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	707	Open in IMG/M
3300012582\|Ga0137358_10944511	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	562	Open in IMG/M
3300012685\|Ga0137397_10373384	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1062	Open in IMG/M
3300012922\|Ga0137394_10212007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus opacus	1656	Open in IMG/M
3300012944\|Ga0137410_12010944	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300012972\|Ga0134077_10508287	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300012977\|Ga0134087_10302848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	749	Open in IMG/M
3300012977\|Ga0134087_10369690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	690	Open in IMG/M
3300015356\|Ga0134073_10386030	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	524	Open in IMG/M
3300015357\|Ga0134072_10164656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300015358\|Ga0134089_10357430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	616	Open in IMG/M
3300017656\|Ga0134112_10430355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	549	Open in IMG/M
3300018431\|Ga0066655_10629577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	725	Open in IMG/M
3300020199\|Ga0179592_10416197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300021178\|Ga0210408_10191283	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300022533\|Ga0242662_10089547	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	862	Open in IMG/M
3300025905\|Ga0207685_10312878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	781	Open in IMG/M
3300025910\|Ga0207684_10023068	All Organisms → cellular organisms → Bacteria	5315	Open in IMG/M
3300025910\|Ga0207684_11129482	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	651	Open in IMG/M
3300025938\|Ga0207704_11391112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300025972\|Ga0207668_10443744	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1106	Open in IMG/M
3300026285\|Ga0209438_1175665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300026310\|Ga0209239_1067843	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1564	Open in IMG/M
3300026315\|Ga0209686_1169620	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	622	Open in IMG/M
3300026331\|Ga0209267_1099824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1236	Open in IMG/M
3300026334\|Ga0209377_1146631	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	900	Open in IMG/M
3300026515\|Ga0257158_1068833	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300026524\|Ga0209690_1266567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300027655\|Ga0209388_1143778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300027882\|Ga0209590_10622674	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	694	Open in IMG/M
3300027907\|Ga0207428_10786233	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	677	Open in IMG/M
3300028380\|Ga0268265_11250925	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300031720\|Ga0307469_10970601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	791	Open in IMG/M
3300031820\|Ga0307473_11374379	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	531	Open in IMG/M
3300032174\|Ga0307470_10984877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	669	Open in IMG/M
3300032180\|Ga0307471_100670605	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.53%
Host-Associated	Host-Associated	25.47%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.53%
Plants	Host-Associated → Plants	25.47%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.92%
Loam	Environmental → Terrestrial → Soil → Loam	10.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.32%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1016689252	3300000364	Soil	MRAMTPDSLSDLLACVAAFGRSLDESFDPARFLADFSARSQRLVPHDYMLIALREDDGQTYSVFAEYVVRGSLRRDNRRYTTAFERGGRAASESFALAPVFGGEAQLTADMAIDDRFGEATACRATLREARLRARLAVPLF
JGI25381J37097_10469801	3300002557	Grasslands Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVM
JGI25382J37095_101780062	3300002562	Grasslands Soil	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADVATDDRFGEASAC
JGI25612J43240_10826261	3300002886	Grasslands Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATL
JGI25382J43887_100820943	3300002908	Grasslands Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALI
JGI25386J43895_100597071	3300002912	Grasslands Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHTAVALHRERRRRERLAAATALA
JGI25387J43893_10598661	3300002915	Grasslands Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIIMSATVGLYTEAHALACRQVSDLIGP
Ga0066690_105616572	3300005177	Soil	VLAPGPGNGYRASVLPLTPVDSPSDLLACVAAFGRSLDESFDPGRSLSEFSTRTQRLVPHDYMVIALLEDRGQTYLLFAEYAVRGSLPGDDRRYTTAFERGARVAAESFPLAPVFGGEPQLIG
Ga0066685_109493891	3300005180	Soil	MSAMTPVDSPSDLLACVAAFGRSLDEKFDPARFLVEFSARTQRLAPHDYMIIALLEDRGQTYSLFAEHAVGVSVRGDGRRYTTAFERGAREAAESFPLAPVFGGELQLIGDITTDDRFREATACREALDEAGLRATLAVPLFAGGRVGGAL
Ga0066678_102285601	3300005181	Soil	MSAMTPDGLSDLLESVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIVLREDDGQTFSLFAEYAGRGGVGGETRRYTTAFERGGRAATESFALSPVFGGEMEVIADMATDDRFGEASACRATLGEAGLRARLAVPLFAGGHV
Ga0066678_108794231	3300005181	Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCA
Ga0066676_108005001	3300005186	Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHTAVALHRERRRRERLAAA
Ga0066675_106928411	3300005187	Soil	MTPVDSPSDLLACVAAFGRSLDESFDPGRSLSEFSARTQRLVPHDYMVIALLEDRGQTYSLFAEYAVRGSLPGDDRRYTTAFERGARVAAESFPLAPVFGGEPQLIGDVTTDDRFREATACREALDEAGLRATLAVPLFAGGR
Ga0070668_1003668701	3300005347	Switchgrass Rhizosphere	MGSMTPDSLSDLLACVAAFGRSLDESFHPARFLAEFSASTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRSLRGDNNRYTTTFERGGRVATESFALTSAFEGETQVIADMGTDNRFDEATTW
Ga0070700_1007877661	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDSLSDLLACVAAFGRSLDESFHPARFLAEFSASTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRNLRGDNNRYTTTFERGGRVATESFALASAFEGETQVIADMGTDNRFDEATTW
Ga0070708_1001519742	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDGLSDLLACVAAFGSSLDESFDPTRFLAEFSAHTQRLVPHDYMLIALREDDGKTRSVFAEYAVRGAILSDGSHYTTTSGRVLTDVFALAPVFEGDEQLIADMATDERLGDATAFRAKVGEASPEKDQQERSGDD*
Ga0070708_1010627522	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFGEASACRATLGE
Ga0066686_109818871	3300005446	Soil	PRTMRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVH
Ga0070662_1019648351	3300005457	Corn Rhizosphere	ARRRARLADASAAYRRTMKAMTPDSVSDLLACVAAFGRSLDESFDPARFLAEFSARTQRLVPHDYMLIALREDEGQTYSLFAEYAERRSLRSDNKRYATTFERGGRVATESFALASAFEGETQVIADMATDYRFDEATIWRAKLRESGLRARLAVPLFAGGHVSGALV
Ga0070706_1017115531	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSAMTPDSLPDLLACVAAFGRSLDESLDPARFLAEFSASSQRLVPHDHMFIALPENKGETYSLFAAYAVRGSLRADSTRYTTAFERGGRVATESVALAPVFGGETQVIADIAIDDRFREATLCREALAEAELRARLAVPLRAGGRVVGAL
Ga0070698_1016245962	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYLLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFGEASACRATLGEAGLRARLAVPLVVG
Ga0070699_1003208223	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDAMTPDGLSDLLACVAAFGSSLDESFDPTRFLAEFSAHTQRLVPHDYMLIALREDDGKTRSVFAEYAVRGAILSDGSHYTTTSGRVLTDVFALAPVFEGDEQLIADMATDERLGDATAFRAKVGEAAPEKDQQERSGDD*
Ga0070699_1004278163	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTPDSVSDLLACVAAFGRSLDESFDPARFLAEFSARTQRLVPHDYMLIALREDEGQTYSLFAEYAERRSLRSDNKRYATTFERGGRVATESFALASAFEGETQVIADMATDYRFDEATIWRAKLRESGLRARLAVPLFAGG
Ga0070672_1018355892	3300005543	Miscanthus Rhizosphere	MTPDSVSDLLACVAAFGRSLDESFDPARFLAEFSARTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRSLRGDNNRYTTTFERGGRVATESFALASAFEGETQVIAD
Ga0066695_107047871	3300005553	Soil	PRTMRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHTAVALHRERRRRER
Ga0066692_103665022	3300005555	Soil	FGIVKRRTMSAMTPDSLSDLLACVAAFGRSLNDSFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTYSVFAEYAVRGSLRGDNRRYTTASERGGRVATETFALAPVFRGETQLTADMATDDSFGEGTACRAQLGEARLRARLAVPLLVSLGRLYG*
Ga0066703_101792901	3300005568	Soil	LNFGIVKRRTMSAMTPDTLSDLLECVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFGEASACRATLGEAGLRARLAVPLFAGGHVSGALVVMSAIAGMYTDAHASACR
Ga0066706_106979341	3300005598	Soil	VISVWTVSYKKVAAVSRRATAFEIVKRRTMSAMTPDGLSELLECVAAFGKSLDEPFDPARFLAEFSASTQRLVPHDYMLIALREDDGHTYSLFAEYTVGGSVRGDNQRYTTAFERGGRAATESFALAPVFAGEAQLIADVATDDSFREATACRAKLDEAGLRARLA
Ga0068866_111068411	3300005718	Miscanthus Rhizosphere	QNDGWHHVVHDSRSHHADDRTEPWTAVTTGVADSGIVKRRTMGSMTPDSLSDLLACVAAFGRSLDESFHPARFLAEFSASTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRSLRGDNNRYTTTFERGGRVATESFALTSAFEGETQVIADMGTDNRFDEATTWRAQLSEWGLRARLAVPLFAGGHVS
Ga0068862_1007527881	3300005844	Switchgrass Rhizosphere	MGSMTPDSLSDLLACVAAFGRSLDESFHPARFLAEFSASTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRSLRGDNNRYTTTFERGGRVATESFALASAFEGETQIIADMATDNRFDEATIWRAKLRE
Ga0079222_118647181	3300006755	Agricultural Soil	MSAMTPDSLPDLLACVAAFGRSLDEGFDPARFLAEFSASSQRLVPHDHMFIAVPENKGETYSLFAAYAVRGSLRADNTRYTTAFERGGRVATVSVALAPVFGGETQVIADIATDDRFREARLCREALAEAELRARLAVP
Ga0079222_120778521	3300006755	Agricultural Soil	MSAMTPDALSDLLACVAAFGRSLDEPFDPARFLAEFSAHSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALVPVFGGEVEVIADMATDDRFGEANACRATLGEAG
Ga0066665_110076921	3300006796	Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALI
Ga0079220_115420901	3300006806	Agricultural Soil	MVPDSFSDLLACVAAFGKSLDQSFDPAQFLAEFSARSQRLVPHDHMVIALPEDNGQTYSVFAEYAVSSGLRADNRLYTTSFERGGRVATESGALTPVFGGETQLIADMATDDRLAEAAACRTRVGEAG
Ga0075428_1007839521	3300006844	Populus Rhizosphere	LNFGIVKRRTMSAMTPDTLSDLLECVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGRRVATESFALAPVFGGEMEVIADMATDDRFGEA
Ga0075431_1012223941	3300006847	Populus Rhizosphere	LNFGIVKRRTMSAMTPDGLSDLLECVAAFGRSLDERFDPARFLAEFSVRSQRLVPHDYVLIALREDNGQTYSVFAEYAVRSSHGHDNRRYTTAFERGGRAETGSFALAPVFGGEAQVIADMAIDERFGEAAACRARLGEAGLRARL
Ga0075433_108036471	3300006852	Populus Rhizosphere	MTPDSLSDLLACVAAFGNSLHESFDPARFLAEFSGRTQRLVPHDYMLIALREDDGQTYSLFAEYAVRGSLRGDNSRYTTAFERGRPPECVALAPVFGGETQLIADMATDD
Ga0075425_1001077456	3300006854	Populus Rhizosphere	MTPDSLSDLLACVAAFGNSLHESFDPARFLAEFSGRTQRLVPHDYMLIALREDDGQTYSLFAEYAVRGSLRGDHSRYTTAFERGRPPECVALAPVFGGETQLIADMATDDQFG
Ga0075425_1020829531	3300006854	Populus Rhizosphere	MSAMTPDALSDLLACVAAFGRSLDEPFDPARFLAEFSAHSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALVPVFGGEMEVIADMATDDRFGE
Ga0075426_100653531	3300006903	Populus Rhizosphere	MTPDSLPDLLACVAAFGRSLDESLDPARFLAEFSASFQRLVPHDHMFIALPENKGETYSLFAAYAVRGSLRADSTRYTTAFERGGRVPTESVALAPVFGGETQVIADIAIDDRFREATL
Ga0075424_1003402541	3300006904	Populus Rhizosphere	MDAMTPDDLSDLLACVAAFGRSLDDRLEPARFLAEFSARTQRLVPHDYMLIALRENEGKTRSVFAEYAVRGAILSDGSHYTTASGRVPTDIFALAPVFEGDEQLIADMATDERLRDATAFRAKVGEAGLRARLAVPLYAGGHVGGALVVMSATAGMYTEAHASAC
Ga0075436_1005192863	3300006914	Populus Rhizosphere	MSAMTPDTLSDLLECVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGETRRYTTAFERGGRAATGSFALVPVFGGEMEVIADMATDDRFGEASACRATLGE
Ga0075436_1014834241	3300006914	Populus Rhizosphere	MSAMTPDGLSDLVACIAAFGRSLGGSFDPARFLAEFSARTQRLVPHDYMLIARLEDDGQTYSVFAEYSAHGSVGSDKKPYTTAFERGGRAATDSSALAPVFGGEAQLIADVATDDGFG
Ga0075419_103522311	3300006969	Populus Rhizosphere	MSAITPDSLSDLLACVAAFGNSLHESFDPARFLAEFSGRTQRLVPHDYMLIALREDDGQTYSLFAEYAVRGSLRGDNSRYTTAFERGRPPECVALAPVFGGETQLIADMATDDQFGEAAACQEGLGETRLRARLAVPLFGSGHVSGALVVMSASA
Ga0075419_111092841	3300006969	Populus Rhizosphere	LDERFDPARFLAEFSVRSQRLVPHDYVLIALREDNGQTYSVFAEYAVRSSHGHDNRRYTTAFERGGRAETGSFALAPVFGGEAQVIADMAIDERFGEAAACRARLGEAGLRARLAVPLFAAGHVGGALIVMSATVGLYTEAHALACRQVADLIGPFVETVVMLHRERRRRERLAAATALAPILGASLKVGDVL
Ga0099791_102266992	3300007255	Vadose Zone Soil	MTPDSVSDLLACVAAFGRSLDEKFDPARFLAEFSARTQRPVPHDYMLIALREDDGQTYSLFAEYAARRSLRGANKRYTTTFERGGRVATESFALASAFEGETQVIGDMATDNRFDEATTWRAKLHESGLRARLAVPLFAGG
Ga0099794_106431761	3300007265	Vadose Zone Soil	AQPIDVTNAGVETDLVIDQEKDESSCGGLVQLNTMTPDGLSDLLACVAAFGRSLDEHFDPARFLAEFSARTQRLVPHDHMLIAVLEDDGQTYSVFAEYAVRGRLLAGEAQYTTAFARGGRLATEDCALTPVFKGETQLIADVTTDDRLSETLGKAGLRARLAVPLFAGGHVGGALTVMSATAGRYTE
Ga0066710_1011586522	3300009012	Grasslands Soil	MSAMTPDSLSDLLACVAAFGRSLNDSFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTYSVFAEYAVRGSLRGDNRRYTTASERGGRVATETFALAPVFRGETQLTADMATDDSFGEGTACRAQLGEARLRARLAVPLLVSLGRLYG
Ga0066710_1044313851	3300009012	Grasslands Soil	MAPDGLSDLLACVAAFGSSFGESFDPTGVLAEFSARTQPVVPHNYMLIAVREDDGNTYSVFAEYAVRGSVGCDNTRYTTAFERGGRSAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSAT
Ga0099827_101132213	3300009090	Vadose Zone Soil	MSAMTPDSLSDLLACVAAFGRSLNDSFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTYSVFAEYAVRGSLRGDNRRYTTAFERGGRVATETFALAPVFPGETQLIADMATDDSFGEGTACRAQLGEAGLRARLAVPLLVSLGRLYG*
Ga0111539_108289071	3300009094	Populus Rhizosphere	MSAMTPDGLSDLLECVAAFGRSLDERFDPARFLAEFSVRSQRLVPHDYVLIALREDNGQTYSVFAEYAVRSSHGHDNRRYTTAFERGGRAETGSFALAPVFGGEAQVIADMAIDERFGEAAACRARLGEAGLRARLAVPLFAAGHVGGALIVMSATVGLYTEAHALACRQVADLIGPFVETVVMLHRERRQRERLAAAT
Ga0075418_105598631	3300009100	Populus Rhizosphere	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLNELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHGAVALHRERRRRERLAAATALAPILG
Ga0066709_1001631342	3300009137	Grasslands Soil	MSAMTPDSLSDLLACVAAFGRSLNDSFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTYSVFAEYAVRGSLRGDNRRYTTASERGGRVATETFALAPVFRGETQLTADMATDDSFGEGTACRAQLGEARLRARLAVPLLVSLGRLYG*
Ga0099792_111448091	3300009143	Vadose Zone Soil	MSAMTPVDSPSDLLACVAAFGRSLDESFDPGRSLSEFSARTQRLVPHDYMVIALLEDRGQTYLLFAEYAVRGSLPGDDRRYTTAFERGARVAAESFPLAPVFGGEPQLIGDVTTDDRFREATACREALDE
Ga0114129_101060911	3300009147	Populus Rhizosphere	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLAEASACRATLNELGLRSRLAVPLCAGGHVRGALIVMSATVG
Ga0114129_123868261	3300009147	Populus Rhizosphere	MRAMTADGLSDLLACVAAFGRSLDGNFDPVRFLAEFSAHSQRLVPHDYMLIALREDDGQTYSLFAEYAVRGSLRGDNSRYTTAFQRGGRVSTESFALAPVFEGEMHLIADMATDDRSGDATACRAKLGDAGLRARLAVPLFAGGHVTGALVV
Ga0111538_110113782	3300009156	Populus Rhizosphere	MAADHLSDLLACVAAFGKSLRESFDPARFLAEFSARAQRLVPHDYMVIALREDDGLTYSLFAEYAVRGSLSADTKRYVTAFERGGRVTIEHSALAPVFAGETQLIADMSTDGGFGKAAGYRARLSAPELRAALAVPLCDSDHVRGALVVMSGTAGMYNE*
Ga0075423_109257872	3300009162	Populus Rhizosphere	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPMVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVADLIGPFVHAAVALHRERRRRERLAAATALAPILG
Ga0134065_101286322	3300010326	Grasslands Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGIVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHAAVALHRERRRR
Ga0134071_105066311	3300010336	Grasslands Soil	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFDKASACQATLGEAGLRARLAVPLVVGGRVRGALV
Ga0134062_102740691	3300010337	Grasslands Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHAAVALHRERRRRERLAAATAL
Ga0134123_100836611	3300010403	Terrestrial Soil	MGSMTPDSLSDLLACVAAFGRSLDESFHPARFLAEFSASTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRSLRGDNNRYTTTFERGGRVATESFALASAFEGETQFIADIATDSRFDEATTWRAKLRQSGLRTRVG
Ga0137383_113559372	3300012199	Vadose Zone Soil	MSAMTPDSLPDLLACVAAFGRSLDESFDPALFLAEFSASSQRLVPHDHVFIALPENKGETYSLFAAYAVRGSLRADSTLYTTAFERGGRVATESVALAPVFGGETQVIADIAT
Ga0137380_111822941	3300012206	Vadose Zone Soil	MSAMTPVDSPSDLLACVAAFGRSLDEKFDPARFLVEFSARTQRLAPHDYMIIALLEDRGQTYSLFAEHAVGVSVRGDGRRYTTAFERGAREAAESFPLAPVFGGELQLIGDITTDDR
Ga0137381_111146651	3300012207	Vadose Zone Soil	MSAMTPDSLPDLLACVAAFGRSLDESFDPARFLAEFSASSQRLVPHDHVFIALPENKGETYSLFAAYAVRGSLRADSTLYTTAFERGGRVATESVALAPVFGGETQVIADIATD
Ga0137371_102214953	3300012356	Vadose Zone Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLI
Ga0137385_100508386	3300012359	Vadose Zone Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACR
Ga0134060_15101501	3300012410	Grasslands Soil	MSAMAPVDSPSDLLACVAAFGRSLDESFDPGRSLSEFSARTQRLVPHDYMVIALLEDRWQTYSLFAEYAIRGSLPGDDRRYTTAFERGARVAAESFPLAPVFGGEPQLIGDVTTDDRFREATACREALDEAGLR
Ga0137358_106483781	3300012582	Vadose Zone Soil	MSAMTPDTVSDLLECVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFGEANACRATLGEAGLRARLAVPLVVGSRVLVRSSS*
Ga0137358_109445111	3300012582	Vadose Zone Soil	MSAMTPDGLSDLLACVAAFGRSLDEHFDPARFLAEFSARTQRLVPHDHMLIAVLEDDGQTYSVFAEYAVRGRLLAGEALYTTAFARGGRLATEDCALTPVFKGETQLIADVTTDDRLSETLGKAGLRARLAVPLFAGGHVGGALTVMSATAGTYTEASASACREI
Ga0137397_103733841	3300012685	Vadose Zone Soil	MSAMTPDSLPDLLACVAAFGRSLDESFDPARFLAEFSASSQRLVPHDHVFIALPENKGETYSLFAAYAVRGSLRADSTLYTTAFERGGRVATGSVALAPVFGGETQVIADIATDDRFREATLCREALAEAELRARLAVPLRAGGRVVGA
Ga0137394_102120073	3300012922	Vadose Zone Soil	MSAMTPVDSPFDLLACVAAFGRSLDESFDPGRSLSEFSARTQRLVPHDYMVIALLEDRGQTYLLFAEYAVRGSLPGDDRRYTTAFERGARVAAESFPLAPVFGGEPQLIGDVTTDDRFREATACREALDEAGLR
Ga0137410_120109442	3300012944	Vadose Zone Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGE
Ga0134077_105082871	3300012972	Grasslands Soil	MSAMTPDTVSDLLECVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFGEASTCRATLGEAGLRARLAVPLFAGGHVSGALVVMSAIAGM
Ga0134087_103028482	3300012977	Grasslands Soil	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEMEVIADMATDDRFGEASACRATLGEAGLRARLAVPLFAGGHVSGALVVMSAI
Ga0134087_103696901	3300012977	Grasslands Soil	MSAMTPVDSPSDLLACVAAFGRSLDESFDPGRSLSEFSARTQRLVPHDYMVIALLEDRGQTYSLFAEYAVRGSLPGDDRRYTTAFERGARVAAESFPLAPVFGGEPQLIGDVTTDDRFREATACREALDE
Ga0134073_103860301	3300015356	Grasslands Soil	LGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHAAVALHR*
Ga0134072_101646561	3300015357	Grasslands Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDL
Ga0134089_103574301	3300015358	Grasslands Soil	MSAMTPVDSPSDLLACVAAFGRSLDEKFDPARFLVEFSARTQRLAPHDYMIIALLEDRGQTYSLFAEHAVGVSVRGDGRRYTTAFERGAREAAESFPLAPVFGGELQLIGDITTDDRFREATACREALDEAGLRA
Ga0134112_104303551	3300017656	Grasslands Soil	MSAMTPVDSPSDLLACVAAFGRSLDEKFDPARFLVEFSARTQRLAPHDYMIIALLEDRGQTYSLFAEHAVGVSVRGDGRRYTTAFERGAREAAESFPLAPVFGGELQLIGDITTDDRFREATACREALDEAGLRAVLAV
Ga0066655_106295771	3300018431	Grasslands Soil	MRAMAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVH
Ga0179592_104161971	3300020199	Vadose Zone Soil	MAPVGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIIMSATVGLYTEAHALA
Ga0210408_101912831	3300021178	Soil	MSAMTPDSLPDLLACVAAFGRSLDESLDPARFLAEFSASFQRLVPHDHMFIALPENKGETYSLFAAYAVRGSLRADSTRYTTAFERGGRVATESVALAPVFGGETQVIADIAIDDRFR
Ga0242662_100895471	3300022533	Soil	MSAMTPDSLPDLLACVAAFGRSLDESLDPARFLAEFSASSQPLVPHDHMFIALPENKGETYSLFAAYTVRGSLRADSTRYTTAFERGGRVATESVALAPVFGGETQVIADIAIDDRFREATLCREALAEAELRARLAVPLRAGGRVV
Ga0207685_103128781	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSAMTPDTLADLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALVPVFGGEMEVIADMATDDRFGEANACRATLGEAGLRARLAVPLVVGGR
Ga0207684_100230683	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDAMTPDGLSDLLACVAAFGSSLDESFDPTRFLAEFSAHTQRLVPHDYMLIALREDDGKTRSVFAEYAVRGAILSDGSHYTTTSGRVLTDVFALAPVFEGDEQLIADMATDERLGDATAFRAKVGEASPEKDQQERSGDD
Ga0207684_111294821	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LNFGIVKRRTMSAMTPDTPSDLLECVAAFGRSLDERFDPARFLAEFSARSQHLVPHDYMLIALREDDGETFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALAPVFGGEIEVIADMATDDRFGEASACRATLAEAGLRA
Ga0207704_113911121	3300025938	Miscanthus Rhizosphere	MKAMTPDSVSDLLACVAAFGRSLDESFDPARFLAEFSARTQRLVPHDYMLIALREDEGQTYSLFAEYAERRSLRSDNKRYATTFERGGRVATESFALASAFEGETQVIADMATD
Ga0207668_104437441	3300025972	Switchgrass Rhizosphere	MGSMTPDSLSDLLACVAAFGRSLDESFHPARFLAEFSASTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRSLRGDNNRYTTTFERGGRVATESFALASAFEGETQVIADIATDNRFDEATTWRAKLRESG
Ga0209438_11756651	3300026285	Grasslands Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVAPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLGELGLRS
Ga0209239_10678431	3300026310	Grasslands Soil	MSAMTPVDSPSDLLACVAAFGRSLDESFDPGRSLSEFSARTQRLVPHDYMVIALLEDRGQTYSLFAEYAVRGSLPGDDRRYTTAFERGARVAAESFPLAPVFGGEPQLIGDVTTDDRFREATACREALDEAG
Ga0209686_11696202	3300026315	Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIIMSATVGLYTEAHALACR
Ga0209267_10998241	3300026331	Soil	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALVSVFGGEMEVIADMATDDRFG
Ga0209377_11466312	3300026334	Soil	KRRTMSAMTPDSLSDLLACVAAFGRSLNDSFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTYSVFAEYAVRGSLRGDNRRYTTASERGGRVATETFALAPVFRGETQLTADMATDDSFGEGTACRAQLGEARLRARLAVPLLVSLGRLYG
Ga0257158_10688331	3300026515	Soil	MGAMTPDSLPDLLACVAAFGRSLDESLDPARFLAEFSASSQRLVPHDHMFIALPENKGETYSLFAAYAVRGSLRADSTRYTTAFERGERVATESVALAPVFGGETQVIADIAIDDRFREATLCREALAEAELRARLAVPLRAGGRVVGA
Ga0209690_12665671	3300026524	Soil	MSAMTPDTLSDLLACVAAFGRSLDERFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTFSLFAEYAGRGGVGGDTRRYTTAFERGGRAATESFALVSVFGGEMEVIADMATDD
Ga0209474_104456851	3300026550	Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLDELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPFVHTAVALHRERRRRERLAAAI
Ga0209388_11437781	3300027655	Vadose Zone Soil	MSAMTPDSVSDLLACVAAFGRSLDEKFDPARFLAEFSARTQRPVPHDYMLIALREDDGQTYSLFAEYAARRSLRGANKRYTTTFERGGRVATESFALASAFEGETQVIGDMATDNRFDEATTWRAKLHESGLRARLAVPLFAGG
Ga0209814_102028172	3300027873	Populus Rhizosphere	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLGEASACRATLNELGLRSRLAVPLCAGGHVRGALIVMSATVGLYTEAHALACRQVSDLIGPLVHAAVALHRERRRRERLAAATALAPILGA
Ga0209590_106226742	3300027882	Vadose Zone Soil	MSRNGKQPTGFGIVKRRTMSAMTPDSLSDLLACVAAFGRSLNDSFDPARFLAEFSARSQRLVPHDYMLIALREDDGQTYSVFAEYAVRGSLRGDNRRYTTAFERGGRVATETFALAPVFRGETQLIADMATDDSFGEGTACRAQLGEAGLRARLAVPLLVSLGRLYG
Ga0207428_107862331	3300027907	Populus Rhizosphere	LNFGIVKRRTMSAMTPDGLSDLLECVAAFGRSLDERFDPARFLAEFSVRSQRLVPHDYVLIALREDNGQTYSVFAEYAVRSSHGHDNRWYTTAFERGGRAETGSFALAPVFGGEAQVIADMAIDERFGEAAACRARLGEAGLRARLAVPLFAAGHVGGALIVMSATVGLYT
Ga0268265_112509251	3300028380	Switchgrass Rhizosphere	MGSMTPDSLSDLLACVAAFGRSLDESFHPARFLAEFSASTQRLVPHDYMLIALREDDGQTCSLFAEYAVRRSLRGDNNRYTTTFERGGRVATESFALASAFEGETQVIADIATD
Ga0307469_109706011	3300031720	Hardwood Forest Soil	VRAAFGRSLDESFDPARFLAEFSARTQRLVPHDYMLIALREDDGQTYSLFAEYAVRRSLRGDNRRYTTTFERGGRVATESFALASAFEGETQVIADMATDNWFNEATTSRAKLRESGLRARLAVPLFAGGHVSGAGMYTEAHASACRQIANLIGPFVETVVRLHRERRRRERLAAATALGLRLKDYAR
Ga0307473_113743792	3300031820	Hardwood Forest Soil	MAPDGLSDLLACVAAFGSSLGQSFDPTGVLAEFSARTQPVVPHDYMLIAVREDDGHTYSVFAEYAVRGSVGCDNKRYTTAFERGGRAAMDSFALAPVFGGEAERVADMASDDRLG
Ga0307470_109848772	3300032174	Hardwood Forest Soil	MSSMTPDSLSDLLACVAAFGRSLDESFDPARFLAEFSARTQRLVPHDYMLIALREDDGQTYSLFAEYAVRRSLRSDDKRYATTFERGGRVATESFALASAFEGETQIIADMATDNRFDEATIWRAK
Ga0307471_1006706052	3300032180	Hardwood Forest Soil	MDAMTPDGLSDLLACVAAFGSSLDESFDPTRFLAEFSAHTQRLVPHDYMLIALREDDGKTRSVFAEYAVRGAILSDGSHYTTTSGRVLTDVFALAPVFEGDEQLIADMATDERLGDATAFRAKVGEAAPEKDQQERSGDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093669

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences