Metagenome / Metatranscriptome Family F093632

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093632
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	48 residues
Representative Sequence	MARANENASAQGRRDLNLTFMAFKRAEASSADWPPDKNAIPGTAAG
Number of Associated Samples	93
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	45.28 %
% of genes near scaffold ends (potentially truncated)	99.06 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.717 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (19.811 % of family members)
Environment Ontology (ENVO)	Unclassified (41.509 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.453 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.49% β-sheet: 0.00% Coil/Unstructured: 63.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01238	PMI_typeI_C	12.26
PF00690	Cation_ATPase_N	12.26
PF00121	TIM	11.32
PF00300	His_Phos_1	4.72
PF02874	ATP-synt_ab_N	3.77
PF00342	PGI	2.83
PF02502	LacAB_rpiB	1.89
PF00274	Glycolytic	1.89
PF00231	ATP-synt	0.94
PF03976	PPK2	0.94
PF00343	Phosphorylase	0.94
PF13091	PLDc_2	0.94
PF13561	adh_short_C2	0.94
PF02922	CBM_48	0.94
PF00137	ATP-synt_C	0.94
PF13180	PDZ_2	0.94
PF02566	OsmC	0.94
PF13518	HTH_28	0.94
PF02366	PMT	0.94
PF00005	ABC_tran	0.94
PF00654	Voltage_CLC	0.94
PF11964	SpoIIAA-like	0.94
PF08282	Hydrolase_3	0.94
PF01548	DEDD_Tnp_IS110	0.94
PF00702	Hydrolase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	12.26
COG1482	Mannose-6-phosphate isomerase, class I	Carbohydrate transport and metabolism [G]	12.26
COG0149	Triosephosphate isomerase	Carbohydrate transport and metabolism [G]	11.32
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	2.83
COG0698	Ribose 5-phosphate isomerase RpiB	Carbohydrate transport and metabolism [G]	1.89
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	1.89
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.94
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.94
COG0224	FoF1-type ATP synthase, gamma subunit	Energy production and conversion [C]	0.94
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.94
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.94
COG0636	FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K	Energy production and conversion [C]	0.94
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.94
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.94
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.94
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.94
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.94
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.72 %
Unclassified	root	N/A	45.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.72 %
Unclassified	root	N/A	45.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.72 %
Unclassified	root	N/A	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	8.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.55 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.55 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.83 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.55 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.94 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.94 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.94 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	6.60 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.94 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.94 %
Merismopediaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae	0.94 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.94 %
Chromobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4.72 %
Microcoleaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae	0.94 %
Chromobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium	0.94 %
Desulfobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacter	0.94 %
Synechocystis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis	0.94 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4.72 %
Chromobacterium sphagni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium sphagni	0.94 %
Planktothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix	0.94 %
unclassified Desulfobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacter → unclassified Desulfobacter	0.94 %
Synechocystis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis	0.94 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4.72 %
Planktothrix agardhii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix → Planktothrix agardhii	0.94 %
Desulfobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacter → unclassified Desulfobacter → Desulfobacter sp.	0.94 %
Chromobacterium sphagni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium sphagni	0.94 %
Synechocystis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis	0.94 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908038\|B3_all_c_ConsensusfromContig191717	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300001870\|JGI24129J20441_1105138	Not Available	510	Open in IMG/M
3300002347\|JGIcombinedJ26865_1012518	All Organisms → cellular organisms → Bacteria → Proteobacteria	1408	Open in IMG/M
3300002347\|JGIcombinedJ26865_1062501	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300003369\|JGI24140J50213_10018021	All Organisms → cellular organisms → Bacteria	2659	Open in IMG/M
3300004030\|Ga0055444_10330530	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300004092\|Ga0062389_101636074	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacter → unclassified Desulfobacter → Desulfobacter sp.	826	Open in IMG/M
3300006792\|Ga0075530_1023348	Not Available	2332	Open in IMG/M
3300009029\|Ga0066793_10396745	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300009617\|Ga0116123_1101532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Merismopediaceae → Synechocystis	765	Open in IMG/M
3300009628\|Ga0116125_1123821	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300009638\|Ga0116113_1058351	Not Available	898	Open in IMG/M
3300009650\|Ga0105857_1004791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	3670	Open in IMG/M
3300009692\|Ga0116171_10331044	Not Available	824	Open in IMG/M
3300014153\|Ga0181527_1138018	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1083	Open in IMG/M
3300014155\|Ga0181524_10451205	Not Available	553	Open in IMG/M
3300014160\|Ga0181517_10349870	Not Available	766	Open in IMG/M
3300014162\|Ga0181538_10110896	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1606	Open in IMG/M
3300014165\|Ga0181523_10169177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1278	Open in IMG/M
3300014167\|Ga0181528_10338154	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300014200\|Ga0181526_10793421	Not Available	597	Open in IMG/M
3300014201\|Ga0181537_10507667	Not Available	825	Open in IMG/M
3300014490\|Ga0182010_10243680	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300014496\|Ga0182011_10702493	Not Available	638	Open in IMG/M
3300014498\|Ga0182019_10014819	All Organisms → cellular organisms → Bacteria	4166	Open in IMG/M
3300014502\|Ga0182021_13000581	Not Available	565	Open in IMG/M
3300014638\|Ga0181536_10392434	Not Available	622	Open in IMG/M
3300014654\|Ga0181525_10297991	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300014654\|Ga0181525_10503681	Not Available	670	Open in IMG/M
3300014658\|Ga0181519_10128685	Not Available	1624	Open in IMG/M
3300014839\|Ga0182027_12015645	Not Available	552	Open in IMG/M
3300016700\|Ga0181513_1283674	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300017929\|Ga0187849_1269753	Not Available	643	Open in IMG/M
3300017929\|Ga0187849_1371457	Not Available	526	Open in IMG/M
3300017935\|Ga0187848_10015494	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4163	Open in IMG/M
3300017946\|Ga0187879_10296814	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300017988\|Ga0181520_10270679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	1287	Open in IMG/M
3300017988\|Ga0181520_10308565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1181	Open in IMG/M
3300018016\|Ga0187880_1105717	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300018017\|Ga0187872_10285615	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300018019\|Ga0187874_10072431	Not Available	1544	Open in IMG/M
3300018022\|Ga0187864_10060541	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2084	Open in IMG/M
3300018026\|Ga0187857_10250710	Not Available	815	Open in IMG/M
3300018040\|Ga0187862_10254526	All Organisms → cellular organisms → Bacteria → Proteobacteria	1127	Open in IMG/M
3300018042\|Ga0187871_10200197	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300019787\|Ga0182031_1173730	Not Available	683	Open in IMG/M
3300019788\|Ga0182028_1132887	Not Available	503	Open in IMG/M
3300020213\|Ga0163152_10209373	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300020713\|Ga0214222_1024642	Not Available	681	Open in IMG/M
3300023090\|Ga0224558_1022426	All Organisms → cellular organisms → Bacteria → Proteobacteria	3148	Open in IMG/M
3300023232\|Ga0224516_1015379	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300024295\|Ga0224556_1160313	Not Available	550	Open in IMG/M
3300025505\|Ga0207929_1095028	Not Available	558	Open in IMG/M
3300025576\|Ga0208820_1099098	Not Available	716	Open in IMG/M
3300025716\|Ga0209746_1096187	Not Available	904	Open in IMG/M
3300025725\|Ga0209638_1149020	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300025858\|Ga0209099_1283141	Not Available	603	Open in IMG/M
3300027854\|Ga0209517_10548073	Not Available	622	Open in IMG/M
3300027905\|Ga0209415_10649713	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300028566\|Ga0302147_10037027	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300028566\|Ga0302147_10196785	Not Available	677	Open in IMG/M
3300028572\|Ga0302152_10038350	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300028780\|Ga0302225_10421437	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300028800\|Ga0265338_10716856	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300028813\|Ga0302157_10087671	Not Available	1998	Open in IMG/M
3300028859\|Ga0302265_1120588	Not Available	830	Open in IMG/M
3300028859\|Ga0302265_1173020	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300028859\|Ga0302265_1176639	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300028909\|Ga0302200_10438980	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300029883\|Ga0311327_10876030	Not Available	519	Open in IMG/M
3300029914\|Ga0311359_10217647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1659	Open in IMG/M
3300029922\|Ga0311363_10255837	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2028	Open in IMG/M
3300029943\|Ga0311340_10519689	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300029943\|Ga0311340_11056657	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300029945\|Ga0311330_11358961	Not Available	508	Open in IMG/M
3300029954\|Ga0311331_11345025	Not Available	592	Open in IMG/M
3300029954\|Ga0311331_11346878	Not Available	592	Open in IMG/M
3300029955\|Ga0311342_10819417	Not Available	714	Open in IMG/M
3300030000\|Ga0311337_11381529	Not Available	617	Open in IMG/M
3300030045\|Ga0302282_1324735	Not Available	553	Open in IMG/M
3300030049\|Ga0302191_10301786	Not Available	588	Open in IMG/M
3300030051\|Ga0302195_10169947	Not Available	1026	Open in IMG/M
3300030056\|Ga0302181_10083199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium sphagni	1612	Open in IMG/M
3300030503\|Ga0311370_10440821	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300030509\|Ga0302183_10134656	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300030519\|Ga0302193_10012603	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6216	Open in IMG/M
3300030618\|Ga0311354_10759321	Not Available	920	Open in IMG/M
3300030943\|Ga0311366_11316764	Not Available	621	Open in IMG/M
3300031233\|Ga0302307_10006917	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6710	Open in IMG/M
3300031236\|Ga0302324_100768895	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300031236\|Ga0302324_102164422	Not Available	691	Open in IMG/M
3300031236\|Ga0302324_103103155	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300031258\|Ga0302318_10478935	Not Available	630	Open in IMG/M
3300031354\|Ga0307446_1051514	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300031524\|Ga0302320_12054820	Not Available	533	Open in IMG/M
3300031539\|Ga0307380_10235273	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300031552\|Ga0315542_1247840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	617	Open in IMG/M
3300031708\|Ga0310686_100150823	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300031708\|Ga0310686_104633530	Not Available	1174	Open in IMG/M
3300031726\|Ga0302321_100489015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1356	Open in IMG/M
3300031727\|Ga0316576_10517145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix → Planktothrix agardhii	877	Open in IMG/M
3300031788\|Ga0302319_10159436	All Organisms → cellular organisms → Bacteria	2986	Open in IMG/M
3300031788\|Ga0302319_11662080	Not Available	559	Open in IMG/M
3300032160\|Ga0311301_12541718	Not Available	571	Open in IMG/M
3300033824\|Ga0334840_155540	Not Available	599	Open in IMG/M
3300033982\|Ga0371487_0462545	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.23%
Host-Associated	Host-Associated	1.89%
Engineered	Engineered	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.26%
Aquatic	Environmental → Aquatic	33.96%
Plants	Host-Associated → Plants	1.89%
Wastewater	Engineered → Wastewater	1.89%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	39.62%
Freshwater	Environmental → Aquatic → Freshwater	31.13%
Soil	Environmental → Terrestrial → Soil	22.64%
Marine	Environmental → Aquatic → Marine	2.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	39.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.49%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	1.89%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.94%
Lake	Environmental → Aquatic → Freshwater → Lake	0.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Clay	Environmental → Terrestrial → Soil → Clay	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	39.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.47%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	8.49%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.77%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	1.89%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	19.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	13.21%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.32%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.38%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	7.55%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	5.66%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.77%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	1.89%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.94%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.94%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.94%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.94%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908038	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
3300001870	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211	Environmental	Open in IMG/M
3300002347	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (NGEE Surface samples 415 (1, 2, 3 deep-072012) AP id is 1030520, ASSEMBLY_DATE=20131219)	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004030	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordA_D2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009692	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG	Engineered	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016700	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020213	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP8.IB-2	Environmental	Open in IMG/M
3300020713	Freshwater microbial communities from Trout Bog Lake, WI - 20AUG2007 hypolimnion	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023232	Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T0	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025716	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes)	Environmental	Open in IMG/M
3300025725	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)	Environmental	Open in IMG/M
3300025858	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028572	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028859	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031354	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-20	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031552	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031727	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5	Host-Associated	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_all_c_02576790	2124908038	Soil	ANAQGNRDLNLTFMAFKRAEASSPDWPPDKNAIPGTAAGTARKRHFTVA
JGI24129J20441_11051381	3300001870	Arctic Peat Soil	MARANENASAQGLPDLNLAFMAFRRAEASFADWPPDKNAIPGTAAGTDRKRQR
JGIcombinedJ26865_10125181	3300002347	Arctic Peat Soil	MSNAGSWMARANENANAQGSRDLNLAFIAFKRADASSPVWPPERNATPGTA
JGIcombinedJ26865_10625011	3300002347	Arctic Peat Soil	MARANENDNGQGNRDLNLTFMAFKRAEARSPGWPPDKNAIPGTAAGTARK
JGI24140J50213_100180214	3300003369	Arctic Peat Soil	MARANENANAQGNRDLNLTFMAFKRAEASSPDWPPDKNTIPPTAAGTDRKRHLTVASAT
Ga0055444_103305302	3300004030	Natural And Restored Wetlands	MARANENANAQGSRNLNRTFMAFKRAEASSAGWPPDKNAIPGTAAGT
Ga0062389_1016360742	3300004092	Bog Forest Soil	MARANENDNAQGGGDFGDLNLTFMAFKRAEASSPDWPPDKNAI
Ga0075530_10233481	3300006792	Arctic Peat Soil	MARANENANAHGRRDVNLAFMAFKRAEASSAGWPPERNAIPGTAAGTARKKHFTVA
Ga0066793_103967451	3300009029	Prmafrost Soil	MARANENANGQGSRDLNLTFMAFKRADASSADWPPDKNAIPGTAAGTARK
Ga0116123_11015321	3300009617	Peatland	MAREKENANAQGMRDLNLTFMAFKRAEASSADWPPDKNAIPGTAAGTARKRHVTV
Ga0116125_11238211	3300009628	Peatland	MARENENVTAQGNRDLNLTFMAFKRAEANSADWPPDRN
Ga0116113_10583513	3300009638	Peatland	MARANENANAQGIRDLNLRFIAFKRADANSADWPPD
Ga0105857_10047913	3300009650	Permafrost Soil	MARENENPNAQGSRDLNLAFMSFNRAEANSAACPPDKNMTPGTAAGTVRSRQ
Ga0116171_103310441	3300009692	Anaerobic Digestor Sludge	MARAKENAKAQGARDLNRTFMAFKRAEARSQDCPPDKNAIPGTAAG
Ga0181527_11380181	3300014153	Bog	MARANENANAQGSRDLNLTFMAFKRAEASSADWPPDKNVIPGTAAGTARKSHLTVA
Ga0181524_104512051	3300014155	Bog	MARANENASAQGSRDLNLTFMAFKRAEASSADWPPDKNAIPGTAAGTDRKRHVTVAS
Ga0181517_103498703	3300014160	Bog	MARANENASAQGRRDLNLTFMAFKRAEASSADWPPDKNAIPGTAAGTAPKR
Ga0181538_101108961	3300014162	Bog	MARANENANAQGSRDLNLTFMAFKRAEASSPGWPPDKNAIPGTAAG
Ga0181523_101691771	3300014165	Bog	MARANENANAQGNRDLNRTFMAFKRAEASSLDCPPDKNAIPGTAAGTARKRHLTVASAT
Ga0181528_103381541	3300014167	Bog	MARANENANAQGSRDLNLTFMAFKRAEANSLGWPPDKNAIPGTAA
Ga0181526_107934211	3300014200	Bog	MARANENANAHGIRDLNRTFMAFKRAEASSPVWPPDKNATPGTAAGTARNKHRTVAFA
Ga0181537_105076672	3300014201	Bog	MARANENANAQGNRDLNLAFIAFKRADANSEDWPPDRNAIAGTAAGTARRKQFTVA
Ga0182010_102436801	3300014490	Fen	MARANENANAQGSRELNLTFMAFKRAEASLLDWPPDKNAIPGTAAGTARRRHLTVA
Ga0182011_107024931	3300014496	Fen	MARANENANAQGNRDLNRTFMAFKRAEASSADWPPDKKAIPGTAAGTARKRHLT
Ga0182019_100148192	3300014498	Fen	MARANENANAHGSRDLNLTFMAFKRAEASSLDWPPDKNVG*
Ga0182021_130005812	3300014502	Fen	MARANENANAQGRRDLNLTFMAFKRAEANSLGWPPDKNAIPGTAAGTARRRHFTV
Ga0181536_103924341	3300014638	Bog	MARANENASAHGIRDLNLTFIAFRRAEASSADWPPDKNAIPGTAAGTDRKRQ
Ga0181525_102979911	3300014654	Bog	MARANENANAQGSRDLNRTFMAFKRAEASSAGCPPDKNAIP
Ga0181525_105036812	3300014654	Bog	MARANENANAQGNRDLNLAFIAFKRADANSEDWPPDRNAIAGTAAGTAR
Ga0181519_101286851	3300014658	Bog	MARANENATAQGNPDLNLTFMAFKRAEANSPDCPPDK
Ga0182027_120156452	3300014839	Fen	MARANEKANAQGSRDLKRTFMAFNRADASSPDWPPDKNAIPPTAAGTACRR
Ga0181513_12836742	3300016700	Peatland	MARENENVTAQGNRDLNLTFMAFKRAEANSADWPPDRNA
Ga0187849_12697532	3300017929	Peatland	MARANENANAQGIRDLNLTFIAFRRAEASSADWPPDKNAIPGTAAGT
Ga0187849_13714571	3300017929	Peatland	MARENENVTTQGNRDLNLTFMAFKRAEANSADWPPDRNAIPGTAAGTDRNKHLTVASATT
Ga0187848_100154946	3300017935	Peatland	MARANENANAQGNRDLNLAFIAFKRAEASSADWPPDKNAIPGTAAG
Ga0187879_102968143	3300017946	Peatland	MARANENASAQGRRDLNLTFMAFKRAEASSADWPPDKNAIPGTAAG
Ga0181520_102706792	3300017988	Bog	MARANENASAQGIRDLNLTFIAFSRAEASSADWPPDKNAIPGTAAGTDRKRQRTVA
Ga0181520_103085651	3300017988	Bog	MARANENANAQGNRDLNLAFIAFKRADANSEDWPPDRNAIAGTAAGTARRKQFTVAPATSSKVGW
Ga0187880_11057171	3300018016	Peatland	MARANENANAQGIRDLNLTFIAFRRAEASSADWPPDKNAIPGT
Ga0187872_102856151	3300018017	Peatland	MARANENANAQGSRALNLTFMAFKRAEASSLDCPPDKNAIPGTAAGTARKRHLT
Ga0187874_100724311	3300018019	Peatland	MARANENASAQGIRDLNLTFIAFRRAEASSADWPPDKNAIHGTAAGTDRKRQRSVA
Ga0187864_100605411	3300018022	Peatland	MARANENANAQGNRDLNLAFIAFKRAEASSADWPPDKNAIPGTAA
Ga0187857_102507102	3300018026	Peatland	MARANEDGGGRGSRDLDLTLMAFKRAEASSADWPPDKNAIPGTAAGTDRKRHLSVA
Ga0187862_102545264	3300018040	Peatland	GCWMARANENANAQGSRDLHLTFMAFKRAEASSTDWPSTTSAIQGQLS
Ga0187871_102001972	3300018042	Peatland	MARANENANAHGIRDLNRTFMAFKRAEASSPVWPPDKN
Ga0182031_11737301	3300019787	Bog	MARANENANAQGIRDLNLRFIAFKRAVANSAGWPPDRNAIAGTAYSSGH
Ga0182028_11328871	3300019788	Fen	MARAYENANAQGSRDLNLTFMAFKRPEASSPDWPPDKNAIPGTAAGTARKRNLTVGTAR
Ga0163152_102093731	3300020213	Freshwater Microbial Mat	MARPNENANAQGRRDLNLRFMAFKRAEANSADWTPAK
Ga0214222_10246422	3300020713	Freshwater	MARANENARGHGSQDLNLTFIAIKRAEAGSADRLPDKDAIPGTAAGTQRNKHVTVASA
Ga0224558_10224261	3300023090	Soil	MARANENANAQGSRSLNRTFMAFKRAEASSADWPPDKNAIPGTAAGTAR
Ga0224516_10153792	3300023232	Soil	MARANENANAQGSRDLNLTFMAFKRAEASSPDWPPDKNVIPGTAAGTARK
Ga0224556_11603131	3300024295	Soil	MARAKENASAHGSRRLKRTFIAFSRAEASSLDCPPERNA
Ga0207929_10950281	3300025505	Arctic Peat Soil	MAPANESANSQGSRDLNLTFMAFKRAEASSLGWPPDKNAIPGTAAGTARKRHFTVA
Ga0208820_10990981	3300025576	Peatland	MARANENASAQGIRDLNLTFIAFRRAEASSADWPPDKNAIPGTAAG
Ga0209746_10961872	3300025716	Arctic Peat Soil	MARANENASAKGSRDLNRTFIAFNRAEASSEGWPH
Ga0209638_11490201	3300025725	Arctic Peat Soil	MARAYENANTQRSGYLNLTFTAFKRADASSVDWPPDENPILGTAAGTGGDRHLTVASAPALTGL
Ga0209099_12831411	3300025858	Anaerobic Digestor Sludge	MARAKENAKAQGARDLNRTFMAFKRAEARSQDCPPDKNAIPGTAAGT
Ga0209517_105480732	3300027854	Peatlands Soil	MARENENVTAQGNRDLNLTCIAFKRAEANSADWPPERNAIPGTAAGTHR
Ga0209415_106497131	3300027905	Peatlands Soil	MARANENANAQGGRDLNLIFIAFKRAEASSLGWPPDKN
Ga0302147_100370273	3300028566	Bog	MARANENATAQGSRDLNLTFMAFSLAEASSPDWPPDRKAIPGTA
Ga0302147_101967851	3300028566	Bog	MARANENANAQGIRDLNLRFIAFKRAVANSAGWPPDRNAIAGTAAGTDPKKQFTVASATS
Ga0302152_100383501	3300028572	Bog	MARANENAKAQGSRDLNRIFMAFNRAEASSADWPPDRNAIPGTAAGTARKRHCSVAS
Ga0302225_104214372	3300028780	Palsa	MARANENATAQGNRDLNRTFIAFKRAEASSPGWPPDKKATPGTA
Ga0265338_107168562	3300028800	Rhizosphere	MARAKENANAQGIPNLNLTFMAFKRAEANSPDWPPDK
Ga0302157_100876712	3300028813	Bog	MARANENANAQGIRDLNLTFIAFRRAEASSADWPPDKNAIPGTAAGTDRKRQRSVA
Ga0302265_11205881	3300028859	Bog	MARANEKASAQGSGDLDFAFIAFKRADASSQDWPPDKK
Ga0302265_11730202	3300028859	Bog	MARANENAKAQGRRNLNLAFMAFKRAEAISPDWPPD
Ga0302265_11766391	3300028859	Bog	MARENENVNAQGIRDLNLTFMAFKRAEASPPGWPPDKNAIPGTAAGT
Ga0302200_104389802	3300028909	Bog	MARANENAKAQGSRDLNRIFMAFNRAEASSADWPPDRNAIPGTAAGTA
Ga0311327_108760301	3300029883	Bog	MARANENANAQGIRDLNLRFIAFKRAVANSAGWPPDRNAIAGTAA
Ga0311359_102176471	3300029914	Bog	MARANENAKAQGGRDPAALNRTFIAFKRAEANSPDWPPDRKAIPG
Ga0311363_102558374	3300029922	Fen	MARANENANAQGIRDLNLRFIAFKRAVANSAGWPP
Ga0311340_105196891	3300029943	Palsa	MARANENATAQGNRDLNRTFIAFKRAEASSPGWPPDKKATPGTAAGTARKRHLTVASAIS
Ga0311340_110566571	3300029943	Palsa	MARANENAKAQGSRDLNRIFMAFNRAEASSADWPPDRNAIPGTAAGTARKR
Ga0311330_113589611	3300029945	Bog	MARANENAKAQGKRDLNRAFMAFNRAEASSLCWPPDKNAIPGTAAGTARKRHLTV
Ga0311331_113450251	3300029954	Bog	MARAYENANAQGDRDLNLTFIAFKRAEASSADWPP
Ga0311331_113468782	3300029954	Bog	MARANENESAQGNRALNRPFIAFRRLEASSLAWPPERNTTPG
Ga0311342_108194172	3300029955	Bog	MARANENASAQGIRDLNLAFMAFKRAEANSADWPPDKNAIPGTAAGTDRKRQRTV
Ga0311337_113815291	3300030000	Fen	MAREKENANAQGMRDLNLTFMAFKRAEASSADCPPDRKAIPGTA
Ga0302282_13247351	3300030045	Fen	MARPYENASAQGNRDLNRTFIAFNRAEASSPDCPPDKNATPGTAAGTE
Ga0302191_103017862	3300030049	Bog	MARANEKASAQGSGDLDFAFIAFKRADASSQDWPPD
Ga0302195_101699472	3300030051	Bog	MARANENANAQGNLDLKLAFIAFKRAEANSVDWPPDKNAIAGTAAGTARKRQLTVASATL
Ga0302181_100831992	3300030056	Palsa	MARAKENAKAHGNRALNLTFMAFKRADASSPDWPPDKKATPGTAA
Ga0311370_104408214	3300030503	Palsa	MARANENATAQGNRDLNRTFIAFKRAEASSPGWPPDKKATPGTAAG
Ga0302183_101346561	3300030509	Palsa	MARANENATAQGNRDLNRTFIAFKRAEASSPGWPPDKKATPGTAAGTARKRHLTV
Ga0302193_100126031	3300030519	Bog	MARANENANAQGSRVLNLTFISFKRAVANCAGWPPD
Ga0311354_107593211	3300030618	Palsa	MARANENANAQGIRDLNRTFMAFNRAEASSADWPPD
Ga0311366_113167642	3300030943	Fen	MARANENASAQGNFDLNRRFMVFKRAEASSADWPPDK
Ga0302307_100069171	3300031233	Palsa	MARANENANSQGNRDLNLAFIAFKRAEANSAGWPPDRNAIAGTAAGTDCR
Ga0302324_1007688952	3300031236	Palsa	MARPNENAKAQGICDLNLTFIAFKRAEASSPDWPPDKNAI
Ga0302324_1021644222	3300031236	Palsa	MARAKENAKPQGKDGLEPAFMAFKRAEASSQDWPPDKKAIAGTAAGTDRN
Ga0302324_1031031551	3300031236	Palsa	WMARENENTKVQGSRDSKRTIMAFKRLEASSSDWPPDKNAVPGTAAGTSETGG
Ga0302318_104789351	3300031258	Bog	MARANENANAQGNLDLKLAFIAFKRAEANSVDWPPDKNAIAGTAAG
Ga0307446_10515142	3300031354	Salt Marsh	MARANENANAQGNRDLNLTFMAFKRAVASSPDWPPDKNAIPGTA
Ga0302320_120548201	3300031524	Bog	MARANENANSQGNRDLNLVFIAFKRAEANSARWPPDRKAIAGTAAGTDRRKQF
Ga0307380_102352731	3300031539	Soil	MARANENASAQGSRDLNLTFMAFKRAEASSPDWPPDKNAIPGTAAGTLLRRQVPVAS
Ga0315542_12478402	3300031552	Salt Marsh Sediment	MARANENASAQGTRDLNPTFMAFKRAEASSLDWPPDKNAIPG
Ga0310686_1001508231	3300031708	Soil	MARANENANAQGSRDLNLTFMAFKRAEANSADWPPDKKAIPGTAAGTARKRHLMV
Ga0310686_1046335302	3300031708	Soil	MARENENATAHGSRDLNLEFIAFKRAEANSAAWPPDKNAIAGTAAGT
Ga0302321_1004890153	3300031726	Fen	MARAYENESAHGSCDLKRRFMAFNRSEASSADWPPDKNAIPGTAAGTVRHKLFT
Ga0316576_105171452	3300031727	Rhizosphere	MARANENANAQGSRDLNLTFIAFKRAEACSPGWPPDKNAIPGTAAGTDLRRQVA
Ga0302319_101594365	3300031788	Bog	MARANENAKAQGRRDVNLTFMAFKRAEANSPDWPPDRNAIAVTAAGT
Ga0302319_116620802	3300031788	Bog	MAQAKENDSAQGSCDLKRRFIRFNRAEASSGDWPPDKNAIRGTAAGTVRQRDFLV
Ga0311301_125417181	3300032160	Peatlands Soil	MARANEKVNAQGSRDLNRTFMAFKRAEASSPDWPPDKNAIPGTAA
Ga0334840_155540_452_598	3300033824	Soil	MARANENANAQGNLDLKLAFIAFKRAEANSVDWPPDKNAIAGTAAGTAR
Ga0371487_0462545_407_538	3300033982	Peat Soil	MARANENANAQGNRDLNLTFIAFKRAEANSADWPPDKNAIAGTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093632

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences